--- /dev/null
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<title>RNAlib-2.1.2: Predicting Locally stable structures of large sequences</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript">
+ $(document).ready(initResizable);
+</script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+ <td style="padding-left: 0.5em;">
+ <div id="projectname">RNAlib-2.1.2
+ </div>
+ </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.1.1 -->
+ <div id="navrow1" class="tabs">
+ <ul class="tablist">
+ <li><a href="index.html"><span>Main Page</span></a></li>
+ <li><a href="pages.html"><span>Related Pages</span></a></li>
+ <li><a href="modules.html"><span>Modules</span></a></li>
+ <li><a href="annotated.html"><span>Data Structures</span></a></li>
+ <li><a href="files.html"><span>Files</span></a></li>
+ </ul>
+ </div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+ <div id="nav-tree">
+ <div id="nav-tree-contents">
+ </div>
+ </div>
+ <div id="splitbar" style="-moz-user-select:none;"
+ class="ui-resizable-handle">
+ </div>
+</div>
+<script type="text/javascript">
+$(document).ready(function(){initNavTree('group__local__fold.html','');});
+</script>
+<div id="doc-content">
+<div class="header">
+ <div class="summary">
+<a href="#groups">Modules</a> |
+<a href="#files">Files</a> </div>
+ <div class="headertitle">
+<div class="title">Predicting Locally stable structures of large sequences</div> </div>
+<div class="ingroups"><a class="el" href="group__folding__routines.html">RNA Secondary Structure Folding</a></div></div><!--header-->
+<div class="contents">
+<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
+ <img id="dynsection-0-trigger" src="closed.png" alt="+"/> Collaboration diagram for Predicting Locally stable structures of large sequences:</div>
+<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
+</div>
+<div id="dynsection-0-content" class="dyncontent" style="display:none;">
+<center><table><tr><td><img src="group__local__fold.png" border="0" alt="" usemap="#group____local____fold"/>
+<map name="group____local____fold" id="group____local____fold">
+<area shape="rect" id="node1" href="group__local__mfe__fold.html" title="Local MFE structure\l Prediction and Z-scores" alt="" coords="441,5,620,46"/><area shape="rect" id="node3" href="group__local__consensus__fold.html" title="Local MFE consensus\l structures for Sequence\l Alignments" alt="" coords="441,69,621,125"/><area shape="rect" id="node5" href="group__local__pf__fold.html" title="Partition functions\l for locally stable\l secondary structures" alt="" coords="450,149,611,205"/><area shape="rect" id="node4" href="group__folding__routines.html" title="This module contains all functions related to thermodynamic folding of RNAs." alt="" coords="6,77,191,118"/></map>
+</td></tr></table></center>
+</div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2><a name="groups"></a>
+Modules</h2></td></tr>
+<tr class="memitem:group__local__mfe__fold"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__mfe__fold.html">Local MFE structure Prediction and Z-scores</a></td></tr>
+<tr class="memitem:group__local__pf__fold"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__pf__fold.html">Partition functions for locally stable secondary structures</a></td></tr>
+<tr class="memitem:group__local__consensus__fold"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__local__consensus__fold.html">Local MFE consensus structures for Sequence Alignments</a></td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2><a name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:Lfold_8h"><td class="memItemLeft" align="right" valign="top">file  </td><td class="memItemRight" valign="bottom"><a class="el" href="Lfold_8h.html">Lfold.h</a></td></tr>
+<tr class="memdesc:Lfold_8h"><td class="mdescLeft"> </td><td class="mdescRight">Predicting local MFE structures of large sequences. <br/></td></tr>
+</table>
+<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
+<p>Local structures can be predicted by a modified version of the <a class="el" href="group__mfe__fold.html#gaadafcb0f140795ae62e5ca027e335a9b" title="Compute minimum free energy and an appropriate secondary structure of an RNA sequence.">fold()</a> algorithm that restricts the span of all base pairs. </p>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+ <ul>
+ <li class="footer">Generated on Wed Jul 24 2013 13:38:59 for RNAlib-2.1.2 by
+ <a href="http://www.doxygen.org/index.html">
+ <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
+ </ul>
+</div>
+</body>
+</html>
git://source.jalview.org / jabaws.git / blobdiff