WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / group__subopt__zuker.html
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
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+<title>RNAlib-2.1.2: Suboptimal structures according to Zuker et al. 1989</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+   <div id="projectname">RNAlib-2.1.2
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.1.1 -->
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+    <ul class="tablist">
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+      <li><a href="pages.html"><span>Related&#160;Pages</span></a></li>
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+      <li><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
+      <li><a href="files.html"><span>Files</span></a></li>
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+</script>
+<div id="doc-content">
+<div class="header">
+  <div class="summary">
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle">
+<div class="title">Suboptimal structures according to Zuker et al. 1989</div>  </div>
+<div class="ingroups"><a class="el" href="group__subopt__fold.html">Enumerating Suboptimal Structures</a></div></div><!--header-->
+<div class="contents">
+<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
+  <img id="dynsection-0-trigger" src="closed.png" alt="+"/> Collaboration diagram for Suboptimal structures according to Zuker et al. 1989:</div>
+<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
+</div>
+<div id="dynsection-0-content" class="dyncontent" style="display:none;">
+<center><table><tr><td><img src="group__subopt__zuker.png" border="0" alt="" usemap="#group____subopt____zuker"/>
+<map name="group____subopt____zuker" id="group____subopt____zuker">
+<area shape="rect" id="node2" href="group__subopt__fold.html" title="Enumerating Suboptimal\l Structures" alt="" coords="5,11,187,53"/></map>
+</td></tr></table></center>
+</div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2><a name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:ga0d5104e3ecf119d8eabd40aa5fe47f90"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structSOLUTION.html">SOLUTION</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__zuker.html#ga0d5104e3ecf119d8eabd40aa5fe47f90">zukersubopt</a> (const char *string)</td></tr>
+<tr class="memdesc:ga0d5104e3ecf119d8eabd40aa5fe47f90"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute Zuker type suboptimal structures.  <a href="#ga0d5104e3ecf119d8eabd40aa5fe47f90"></a><br/></td></tr>
+<tr class="memitem:ga6d98a9450d1affadf144ac79f543da8c"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ga6d98a9450d1affadf144ac79f543da8c"></a>
+<a class="el" href="structSOLUTION.html">SOLUTION</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__zuker.html#ga6d98a9450d1affadf144ac79f543da8c">zukersubopt_par</a> (const char *string, <a class="el" href="structparamT.html">paramT</a> *parameters)</td></tr>
+<tr class="memdesc:ga6d98a9450d1affadf144ac79f543da8c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute Zuker type suboptimal structures. <br/></td></tr>
+</table>
+<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
+<hr/><h2>Function Documentation</h2>
+<a class="anchor" id="ga0d5104e3ecf119d8eabd40aa5fe47f90"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
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+          <td class="memname"><a class="el" href="structSOLUTION.html">SOLUTION</a>* zukersubopt </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>string</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Compute Zuker type suboptimal structures. </p>
+<p>Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.</p>
+<dl class="params"><dt>Parameters:</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">string</td><td>RNA sequence </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns:</dt><dd>List of zuker suboptimal structures </dd></dl>
+
+</div>
+</div>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+    <li class="footer">Generated on Wed Jul 24 2013 13:38:59 for RNAlib-2.1.2 by
+    <a href="http://www.doxygen.org/index.html">
+    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
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