WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / index.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<title>RNAlib-2.1.2: ViennaRNA Package core - RNAlib</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
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+ <tr style="height: 56px;">
+  <td style="padding-left: 0.5em;">
+   <div id="projectname">RNAlib-2.1.2
+   </div>
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+      <li class="current"><a href="index.html"><span>Main&#160;Page</span></a></li>
+      <li><a href="pages.html"><span>Related&#160;Pages</span></a></li>
+      <li><a href="modules.html"><span>Modules</span></a></li>
+      <li><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
+      <li><a href="files.html"><span>Files</span></a></li>
+    </ul>
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+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
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+<div class="header">
+  <div class="headertitle">
+<div class="title">ViennaRNA Package core - RNAlib </div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><p><br/>
+</p>
+ <center> <h2>A Library for folding and comparing RNA secondary structures</h2>
+ </center> <p><br/>
+</p>
+<dl class="section date"><dt>Date:</dt><dd>1994-2012 </dd></dl>
+<dl class="section author"><dt>Authors:</dt><dd>Ivo Hofacker, Peter Stadler, Ronny Lorenz and many more</dd></dl>
+<h3>Table of Contents</h3>
+<hr/>
+<ul>
+<li><a class="el" href="index.html#mp_intro">Introduction</a> </li>
+<li><a class="el" href="group__folding__routines.html">RNA Secondary Structure Folding</a> </li>
+<li><a class="el" href="mp_parse.html">Parsing and Comparing - Functions to Manipulate Structures</a> </li>
+<li><a class="el" href="mp_utils.html">Utilities - Odds and Ends</a> </li>
+<li><a class="el" href="mp_example.html">Example - A Small Example Program</a> </li>
+<li>mp_ref</li>
+</ul>
+<hr/>
+<h1><a class="anchor" id="mp_intro"></a>
+Introduction</h1>
+<p>The core of the Vienna RNA Package (<a class="el" href="citelist.html#CITEREF_lorenz:2011">[8]</a>, <a class="el" href="citelist.html#CITEREF_hofacker:1994">[5]</a>) is formed by a collection of routines for the prediction and comparison of RNA secondary structures. These routines can be accessed through stand-alone programs, such as RNAfold, RNAdistance etc., which should be sufficient for most users. For those who wish to develop their own programs we provide a library which can be linked to your own code.</p>
+<p>This document describes the library and will be primarily useful to programmers. However, it also contains details about the implementation that may be of interest to advanced users. The stand-alone programs are described in separate man pages. The latest version of the package including source code and html versions of the documentation can be found at <br/>
+<br/>
+ <a href="http://www.tbi.univie.ac.at/~ivo/RNA/">http://www.tbi.univie.ac.at/~ivo/RNA/</a> </p>
+</div></div><!-- contents -->
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+  <ul>
+    <li class="footer">Generated on Wed Jul 24 2013 13:39:00 for RNAlib-2.1.2 by
+    <a href="http://www.doxygen.org/index.html">
+    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
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