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+<div class="title">pair_info Struct Reference</div> </div>
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+
+<p>A base pair info structure.
+ <a href="structpair__info.html#details">More...</a></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2><a name="pub-attribs"></a>
+Data Fields</h2></td></tr>
+<tr class="memitem:a7905e17da6a6cc48230ee6205628ed7f"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a7905e17da6a6cc48230ee6205628ed7f"></a>
+unsigned </td><td class="memItemRight" valign="bottom"><a class="el" href="structpair__info.html#a7905e17da6a6cc48230ee6205628ed7f">i</a></td></tr>
+<tr class="memdesc:a7905e17da6a6cc48230ee6205628ed7f"><td class="mdescLeft"> </td><td class="mdescRight">nucleotide position i <br/></td></tr>
+<tr class="memitem:a35665817b5792703ff4325e1bcbe5e21"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a35665817b5792703ff4325e1bcbe5e21"></a>
+unsigned </td><td class="memItemRight" valign="bottom"><a class="el" href="structpair__info.html#a35665817b5792703ff4325e1bcbe5e21">j</a></td></tr>
+<tr class="memdesc:a35665817b5792703ff4325e1bcbe5e21"><td class="mdescLeft"> </td><td class="mdescRight">nucleotide position j <br/></td></tr>
+<tr class="memitem:af0895ea40ec0c23bfe8aa2c3babf0e80"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="af0895ea40ec0c23bfe8aa2c3babf0e80"></a>
+float </td><td class="memItemRight" valign="bottom"><a class="el" href="structpair__info.html#af0895ea40ec0c23bfe8aa2c3babf0e80">p</a></td></tr>
+<tr class="memdesc:af0895ea40ec0c23bfe8aa2c3babf0e80"><td class="mdescLeft"> </td><td class="mdescRight">Probability. <br/></td></tr>
+<tr class="memitem:ab3aa7a54e6976f46e69c6ffcddd0e782"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ab3aa7a54e6976f46e69c6ffcddd0e782"></a>
+float </td><td class="memItemRight" valign="bottom"><a class="el" href="structpair__info.html#ab3aa7a54e6976f46e69c6ffcddd0e782">ent</a></td></tr>
+<tr class="memdesc:ab3aa7a54e6976f46e69c6ffcddd0e782"><td class="mdescLeft"> </td><td class="mdescRight">Pseudo entropy for <img class="formulaInl" alt="$ p(i,j) = S_i + S_j - p_ij*ln(p_ij) $" src="form_3.png"/>. <br/></td></tr>
+<tr class="memitem:a23fc316453d179474bed7f6ed2489723"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a23fc316453d179474bed7f6ed2489723"></a>
+short </td><td class="memItemRight" valign="bottom"><a class="el" href="structpair__info.html#a23fc316453d179474bed7f6ed2489723">bp</a> [8]</td></tr>
+<tr class="memdesc:a23fc316453d179474bed7f6ed2489723"><td class="mdescLeft"> </td><td class="mdescRight">Frequencies of pair_types. <br/></td></tr>
+<tr class="memitem:a4da3d6c9042500c16c4b06e0bbc48190"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a4da3d6c9042500c16c4b06e0bbc48190"></a>
+char </td><td class="memItemRight" valign="bottom"><a class="el" href="structpair__info.html#a4da3d6c9042500c16c4b06e0bbc48190">comp</a></td></tr>
+<tr class="memdesc:a4da3d6c9042500c16c4b06e0bbc48190"><td class="mdescLeft"> </td><td class="mdescRight">1 iff pair is in mfe structure <br/></td></tr>
+</table>
+<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
+<div class="textblock"><p>A base pair info structure. </p>
+<p>For each base pair (i,j) with i,j in [0, n-1] the structure lists:</p>
+<ul>
+<li>its probability 'p'</li>
+<li>an entropy-like measure for its well-definedness 'ent'</li>
+<li>the frequency of each type of pair in 'bp[]'<ul>
+<li>'bp[0]' contains the number of non-compatible sequences</li>
+<li>'bp[1]' the number of CG pairs, etc. </li>
+</ul>
+</li>
+</ul>
+</div><hr/>The documentation for this struct was generated from the following file:<ul>
+<li>/home/mescalin/ronny/public_html/programs/ViennaRNA/H/<a class="el" href="data__structures_8h_source.html">data_structures.h</a></li>
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