WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / structpf__paramT.html
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+<div class="title">pf_paramT Struct Reference</div>  </div>
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+
+<p>The datastructure that contains temperature scaled Boltzmann weights of the energy parameters.  
+ <a href="structpf__paramT.html#details">More...</a></p>
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+  <img id="dynsection-0-trigger" src="closed.png" alt="+"/> Collaboration diagram for pf_paramT:</div>
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+Data Fields</h2></td></tr>
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+<tr class="memdesc:aef40322e7ca1adbd9b438aeda0352e8f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Scaling factor to avoid over-/underflows. <br/></td></tr>
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+<tr class="memdesc:aa0e11e9f1f6e212640baf40d7195a014"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature used for loop contribution scaling. <br/></td></tr>
+<tr class="memitem:a3d2af9040acfa08295efb50f0219149d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpf__paramT.html#a3d2af9040acfa08295efb50f0219149d">alpha</a></td></tr>
+<tr class="memdesc:a3d2af9040acfa08295efb50f0219149d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Scaling factor for the thermodynamic temperature.  <a href="#a3d2af9040acfa08295efb50f0219149d"></a><br/></td></tr>
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+<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
+<div class="textblock"><p>The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. </p>
+</div><hr/><h2>Field Documentation</h2>
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+          <td class="memname">double pf_paramT::alpha</td>
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+<p>Scaling factor for the thermodynamic temperature. </p>
+<p>This allows for temperature scaling in Boltzmann factors independently from the energy contributions. The resulting Boltzmann factors are then computed by <img class="formulaInl" alt="$ e^{-E/(\alpha \cdot K \cdot T)} $" src="form_2.png"/> </p>
+
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