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WSTester updated to work plus hopefully all the other changes that need to go into...
[jabaws.git] / binaries / src / ViennaRNA / doc / html / subopt_8h.html
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+<div id="doc-content">
+<div class="header">
+  <div class="summary">
+<a href="#func-members">Functions</a> &#124;
+<a href="#var-members">Variables</a>  </div>
+  <div class="headertitle">
+<div class="title">subopt.h File Reference<div class="ingroups"><a class="el" href="group__subopt__fold.html">Enumerating Suboptimal Structures</a></div></div>  </div>
+</div><!--header-->
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+
+<p>RNAsubopt and density of states declarations.  
+<a href="#details">More...</a></p>
+<div class="textblock"><div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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+<p><a href="subopt_8h_source.html">Go to the source code of this file.</a></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2><a name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:ga700f662506a233e42dd7fda74fafd40e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structSOLUTION.html">SOLUTION</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__wuchty.html#ga700f662506a233e42dd7fda74fafd40e">subopt</a> (char *seq, char *structure, int delta, FILE *fp)</td></tr>
+<tr class="memdesc:ga700f662506a233e42dd7fda74fafd40e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns list of subopt structures or writes to fp.  <a href="group__subopt__wuchty.html#ga700f662506a233e42dd7fda74fafd40e"></a><br/></td></tr>
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+<tr class="memdesc:ga554dedfcdb249fdf151caade58666e4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns list of subopt structures or writes to fp. <br/></td></tr>
+<tr class="memitem:ga8634516e4740e0b6c9a46d2bae940340"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structSOLUTION.html">SOLUTION</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__wuchty.html#ga8634516e4740e0b6c9a46d2bae940340">subopt_circ</a> (char *seq, char *sequence, int delta, FILE *fp)</td></tr>
+<tr class="memdesc:ga8634516e4740e0b6c9a46d2bae940340"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns list of circular subopt structures or writes to fp.  <a href="group__subopt__wuchty.html#ga8634516e4740e0b6c9a46d2bae940340"></a><br/></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__wuchty.html#ga873cf8ed69e0437f8efa8b1fec854a0e">subopt_sorted</a></td></tr>
+<tr class="memdesc:ga873cf8ed69e0437f8efa8b1fec854a0e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sort output by energy. <br/></td></tr>
+<tr class="memitem:ga5e57d914bcb5feeecdf520e25313fcfe"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ga5e57d914bcb5feeecdf520e25313fcfe"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__wuchty.html#ga5e57d914bcb5feeecdf520e25313fcfe">print_energy</a></td></tr>
+<tr class="memdesc:ga5e57d914bcb5feeecdf520e25313fcfe"><td class="mdescLeft">&#160;</td><td class="mdescRight">printing threshold for use with logML <br/></td></tr>
+<tr class="memitem:ga937634a76b46a22530a74906f1957a9e"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dos.html#ga937634a76b46a22530a74906f1957a9e">density_of_states</a> [<a class="el" href="data__structures_8h.html#a5ec740b80afb4906ba4311dbd8ddbd89">MAXDOS</a>+1]</td></tr>
+<tr class="memdesc:ga937634a76b46a22530a74906f1957a9e"><td class="mdescLeft">&#160;</td><td class="mdescRight">The Density of States.  <a href="group__dos.html#ga937634a76b46a22530a74906f1957a9e"></a><br/></td></tr>
+</table>
+<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
+<div class="textblock"><p>RNAsubopt and density of states declarations. </p>
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+    <li class="footer">Generated on Wed Jul 24 2013 13:38:58 for RNAlib-2.1.2 by
+    <a href="http://www.doxygen.org/index.html">
+    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
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