--- /dev/null
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<title>RNAlib-2.1.2: /home/mescalin/ronny/public_html/programs/ViennaRNA/H/treedist.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript">
+ $(document).ready(initResizable);
+</script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+ <td style="padding-left: 0.5em;">
+ <div id="projectname">RNAlib-2.1.2
+ </div>
+ </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.1.1 -->
+ <div id="navrow1" class="tabs">
+ <ul class="tablist">
+ <li><a href="index.html"><span>Main Page</span></a></li>
+ <li><a href="pages.html"><span>Related Pages</span></a></li>
+ <li><a href="modules.html"><span>Modules</span></a></li>
+ <li><a href="annotated.html"><span>Data Structures</span></a></li>
+ <li class="current"><a href="files.html"><span>Files</span></a></li>
+ </ul>
+ </div>
+ <div id="navrow2" class="tabs2">
+ <ul class="tablist">
+ <li><a href="files.html"><span>File List</span></a></li>
+ <li><a href="globals.html"><span>Globals</span></a></li>
+ </ul>
+ </div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+ <div id="nav-tree">
+ <div id="nav-tree-contents">
+ </div>
+ </div>
+ <div id="splitbar" style="-moz-user-select:none;"
+ class="ui-resizable-handle">
+ </div>
+</div>
+<script type="text/javascript">
+$(document).ready(function(){initNavTree('treedist_8h.html','');});
+</script>
+<div id="doc-content">
+<div class="header">
+ <div class="summary">
+<a href="#func-members">Functions</a> </div>
+ <div class="headertitle">
+<div class="title">treedist.h File Reference</div> </div>
+</div><!--header-->
+<div class="contents">
+
+<p>Functions for <a class="el" href="structTree.html">Tree</a> Edit Distances.
+<a href="#details">More...</a></p>
+<div class="textblock"><div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
+ <img id="dynsection-0-trigger" src="closed.png" alt="+"/> Include dependency graph for treedist.h:</div>
+<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
+</div>
+<div id="dynsection-0-content" class="dyncontent" style="display:none;">
+<div class="center"><img src="treedist_8h__incl.png" border="0" usemap="#_2home_2mescalin_2ronny_2public__html_2programs_2ViennaRNA_2H_2treedist_8h" alt=""/></div>
+<map name="_2home_2mescalin_2ronny_2public__html_2programs_2ViennaRNA_2H_2treedist_8h" id="_2home_2mescalin_2ronny_2public__html_2programs_2ViennaRNA_2H_2treedist_8h">
+<area shape="rect" id="node3" href="dist__vars_8h.html" title="Global variables for Distance-Package." alt="" coords="48,109,139,136"/></map>
+</div>
+</div>
+<p><a href="treedist_8h_source.html">Go to the source code of this file.</a></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2><a name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a08fe4d5afd385dce593b86eaf010c6e3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structTree.html">Tree</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="treedist_8h.html#a08fe4d5afd385dce593b86eaf010c6e3">make_tree</a> (char *struc)</td></tr>
+<tr class="memdesc:a08fe4d5afd385dce593b86eaf010c6e3"><td class="mdescLeft"> </td><td class="mdescRight">Constructs a <a class="el" href="structTree.html">Tree</a> ( essentially the postorder list ) of the structure 'struc', for use in <a class="el" href="treedist_8h.html#a3b21f1925f7071f46d93431a835217bb" title="Calculates the edit distance of the two trees.">tree_edit_distance()</a>. <a href="#a08fe4d5afd385dce593b86eaf010c6e3"></a><br/></td></tr>
+<tr class="memitem:a3b21f1925f7071f46d93431a835217bb"><td class="memItemLeft" align="right" valign="top">float </td><td class="memItemRight" valign="bottom"><a class="el" href="treedist_8h.html#a3b21f1925f7071f46d93431a835217bb">tree_edit_distance</a> (<a class="el" href="structTree.html">Tree</a> *T1, <a class="el" href="structTree.html">Tree</a> *T2)</td></tr>
+<tr class="memdesc:a3b21f1925f7071f46d93431a835217bb"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the edit distance of the two trees. <a href="#a3b21f1925f7071f46d93431a835217bb"></a><br/></td></tr>
+<tr class="memitem:a21ad4de3ba4055aeef08b28c9ad48894"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a21ad4de3ba4055aeef08b28c9ad48894"></a>
+void </td><td class="memItemRight" valign="bottom"><a class="el" href="treedist_8h.html#a21ad4de3ba4055aeef08b28c9ad48894">print_tree</a> (<a class="el" href="structTree.html">Tree</a> *t)</td></tr>
+<tr class="memdesc:a21ad4de3ba4055aeef08b28c9ad48894"><td class="mdescLeft"> </td><td class="mdescRight">Print a tree (mainly for debugging) <br/></td></tr>
+<tr class="memitem:acbc1cb9bce582ea945e4a467c76a57aa"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="treedist_8h.html#acbc1cb9bce582ea945e4a467c76a57aa">free_tree</a> (<a class="el" href="structTree.html">Tree</a> *t)</td></tr>
+<tr class="memdesc:acbc1cb9bce582ea945e4a467c76a57aa"><td class="mdescLeft"> </td><td class="mdescRight">Free the memory allocated for <a class="el" href="structTree.html">Tree</a> t. <a href="#acbc1cb9bce582ea945e4a467c76a57aa"></a><br/></td></tr>
+</table>
+<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
+<div class="textblock"><p>Functions for <a class="el" href="structTree.html">Tree</a> Edit Distances. </p>
+</div><hr/><h2>Function Documentation</h2>
+<a class="anchor" id="a08fe4d5afd385dce593b86eaf010c6e3"></a>
+<div class="memitem">
+<div class="memproto">
+ <table class="memname">
+ <tr>
+ <td class="memname"><a class="el" href="structTree.html">Tree</a>* make_tree </td>
+ <td>(</td>
+ <td class="paramtype">char * </td>
+ <td class="paramname"><em>struc</em></td><td>)</td>
+ <td></td>
+ </tr>
+ </table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="structTree.html">Tree</a> ( essentially the postorder list ) of the structure 'struc', for use in <a class="el" href="treedist_8h.html#a3b21f1925f7071f46d93431a835217bb" title="Calculates the edit distance of the two trees.">tree_edit_distance()</a>. </p>
+<dl class="params"><dt>Parameters:</dt><dd>
+ <table class="params">
+ <tr><td class="paramname">struc</td><td>may be any rooted structure representation. </td></tr>
+ </table>
+ </dd>
+</dl>
+<dl class="section return"><dt>Returns:</dt><dd></dd></dl>
+
+</div>
+</div>
+<a class="anchor" id="a3b21f1925f7071f46d93431a835217bb"></a>
+<div class="memitem">
+<div class="memproto">
+ <table class="memname">
+ <tr>
+ <td class="memname">float tree_edit_distance </td>
+ <td>(</td>
+ <td class="paramtype"><a class="el" href="structTree.html">Tree</a> * </td>
+ <td class="paramname"><em>T1</em>, </td>
+ </tr>
+ <tr>
+ <td class="paramkey"></td>
+ <td></td>
+ <td class="paramtype"><a class="el" href="structTree.html">Tree</a> * </td>
+ <td class="paramname"><em>T2</em> </td>
+ </tr>
+ <tr>
+ <td></td>
+ <td>)</td>
+ <td></td><td></td>
+ </tr>
+ </table>
+</div><div class="memdoc">
+
+<p>Calculates the edit distance of the two trees. </p>
+<dl class="params"><dt>Parameters:</dt><dd>
+ <table class="params">
+ <tr><td class="paramname">T1</td><td></td></tr>
+ <tr><td class="paramname">T2</td><td></td></tr>
+ </table>
+ </dd>
+</dl>
+<dl class="section return"><dt>Returns:</dt><dd></dd></dl>
+
+</div>
+</div>
+<a class="anchor" id="acbc1cb9bce582ea945e4a467c76a57aa"></a>
+<div class="memitem">
+<div class="memproto">
+ <table class="memname">
+ <tr>
+ <td class="memname">void free_tree </td>
+ <td>(</td>
+ <td class="paramtype"><a class="el" href="structTree.html">Tree</a> * </td>
+ <td class="paramname"><em>t</em></td><td>)</td>
+ <td></td>
+ </tr>
+ </table>
+</div><div class="memdoc">
+
+<p>Free the memory allocated for <a class="el" href="structTree.html">Tree</a> t. </p>
+<dl class="params"><dt>Parameters:</dt><dd>
+ <table class="params">
+ <tr><td class="paramname">t</td><td></td></tr>
+ </table>
+ </dd>
+</dl>
+
+</div>
+</div>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+ <ul>
+ <li class="navelem"><a class="el" href="dir_d72344b28b4f2089ce25682c4e6eba22.html">H</a></li><li class="navelem"><a class="el" href="treedist_8h.html">treedist.h</a></li>
+ <li class="footer">Generated on Wed Jul 24 2013 13:38:59 for RNAlib-2.1.2 by
+ <a href="http://www.doxygen.org/index.html">
+ <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
+ </ul>
+</div>
+</body>
+</html>
git://source.jalview.org / jabaws.git / blobdiff