--- /dev/null
+/* ----------------------------------------------------------------------------
+ * This file was automatically generated by SWIG (http://www.swig.org).
+ * Version 2.0.8
+ *
+ * This file is not intended to be easily readable and contains a number of
+ * coding conventions designed to improve portability and efficiency. Do not make
+ * changes to this file unless you know what you are doing--modify the SWIG
+ * interface file instead.
+ * ----------------------------------------------------------------------------- */
+
+#define SWIGPYTHON
+#define SWIG_PYTHON_DIRECTOR_NO_VTABLE
+
+/* -----------------------------------------------------------------------------
+ * This section contains generic SWIG labels for method/variable
+ * declarations/attributes, and other compiler dependent labels.
+ * ----------------------------------------------------------------------------- */
+
+/* template workaround for compilers that cannot correctly implement the C++ standard */
+#ifndef SWIGTEMPLATEDISAMBIGUATOR
+# if defined(__SUNPRO_CC) && (__SUNPRO_CC <= 0x560)
+# define SWIGTEMPLATEDISAMBIGUATOR template
+# elif defined(__HP_aCC)
+/* Needed even with `aCC -AA' when `aCC -V' reports HP ANSI C++ B3910B A.03.55 */
+/* If we find a maximum version that requires this, the test would be __HP_aCC <= 35500 for A.03.55 */
+# define SWIGTEMPLATEDISAMBIGUATOR template
+# else
+# define SWIGTEMPLATEDISAMBIGUATOR
+# endif
+#endif
+
+/* inline attribute */
+#ifndef SWIGINLINE
+# if defined(__cplusplus) || (defined(__GNUC__) && !defined(__STRICT_ANSI__))
+# define SWIGINLINE inline
+# else
+# define SWIGINLINE
+# endif
+#endif
+
+/* attribute recognised by some compilers to avoid 'unused' warnings */
+#ifndef SWIGUNUSED
+# if defined(__GNUC__)
+# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
+# define SWIGUNUSED __attribute__ ((__unused__))
+# else
+# define SWIGUNUSED
+# endif
+# elif defined(__ICC)
+# define SWIGUNUSED __attribute__ ((__unused__))
+# else
+# define SWIGUNUSED
+# endif
+#endif
+
+#ifndef SWIG_MSC_UNSUPPRESS_4505
+# if defined(_MSC_VER)
+# pragma warning(disable : 4505) /* unreferenced local function has been removed */
+# endif
+#endif
+
+#ifndef SWIGUNUSEDPARM
+# ifdef __cplusplus
+# define SWIGUNUSEDPARM(p)
+# else
+# define SWIGUNUSEDPARM(p) p SWIGUNUSED
+# endif
+#endif
+
+/* internal SWIG method */
+#ifndef SWIGINTERN
+# define SWIGINTERN static SWIGUNUSED
+#endif
+
+/* internal inline SWIG method */
+#ifndef SWIGINTERNINLINE
+# define SWIGINTERNINLINE SWIGINTERN SWIGINLINE
+#endif
+
+/* exporting methods */
+#if (__GNUC__ >= 4) || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)
+# ifndef GCC_HASCLASSVISIBILITY
+# define GCC_HASCLASSVISIBILITY
+# endif
+#endif
+
+#ifndef SWIGEXPORT
+# if defined(_WIN32) || defined(__WIN32__) || defined(__CYGWIN__)
+# if defined(STATIC_LINKED)
+# define SWIGEXPORT
+# else
+# define SWIGEXPORT __declspec(dllexport)
+# endif
+# else
+# if defined(__GNUC__) && defined(GCC_HASCLASSVISIBILITY)
+# define SWIGEXPORT __attribute__ ((visibility("default")))
+# else
+# define SWIGEXPORT
+# endif
+# endif
+#endif
+
+/* calling conventions for Windows */
+#ifndef SWIGSTDCALL
+# if defined(_WIN32) || defined(__WIN32__) || defined(__CYGWIN__)
+# define SWIGSTDCALL __stdcall
+# else
+# define SWIGSTDCALL
+# endif
+#endif
+
+/* Deal with Microsoft's attempt at deprecating C standard runtime functions */
+#if !defined(SWIG_NO_CRT_SECURE_NO_DEPRECATE) && defined(_MSC_VER) && !defined(_CRT_SECURE_NO_DEPRECATE)
+# define _CRT_SECURE_NO_DEPRECATE
+#endif
+
+/* Deal with Microsoft's attempt at deprecating methods in the standard C++ library */
+#if !defined(SWIG_NO_SCL_SECURE_NO_DEPRECATE) && defined(_MSC_VER) && !defined(_SCL_SECURE_NO_DEPRECATE)
+# define _SCL_SECURE_NO_DEPRECATE
+#endif
+
+
+
+/* Python.h has to appear first */
+#include <Python.h>
+
+/* -----------------------------------------------------------------------------
+ * swigrun.swg
+ *
+ * This file contains generic C API SWIG runtime support for pointer
+ * type checking.
+ * ----------------------------------------------------------------------------- */
+
+/* This should only be incremented when either the layout of swig_type_info changes,
+ or for whatever reason, the runtime changes incompatibly */
+#define SWIG_RUNTIME_VERSION "4"
+
+/* define SWIG_TYPE_TABLE_NAME as "SWIG_TYPE_TABLE" */
+#ifdef SWIG_TYPE_TABLE
+# define SWIG_QUOTE_STRING(x) #x
+# define SWIG_EXPAND_AND_QUOTE_STRING(x) SWIG_QUOTE_STRING(x)
+# define SWIG_TYPE_TABLE_NAME SWIG_EXPAND_AND_QUOTE_STRING(SWIG_TYPE_TABLE)
+#else
+# define SWIG_TYPE_TABLE_NAME
+#endif
+
+/*
+ You can use the SWIGRUNTIME and SWIGRUNTIMEINLINE macros for
+ creating a static or dynamic library from the SWIG runtime code.
+ In 99.9% of the cases, SWIG just needs to declare them as 'static'.
+
+ But only do this if strictly necessary, ie, if you have problems
+ with your compiler or suchlike.
+*/
+
+#ifndef SWIGRUNTIME
+# define SWIGRUNTIME SWIGINTERN
+#endif
+
+#ifndef SWIGRUNTIMEINLINE
+# define SWIGRUNTIMEINLINE SWIGRUNTIME SWIGINLINE
+#endif
+
+/* Generic buffer size */
+#ifndef SWIG_BUFFER_SIZE
+# define SWIG_BUFFER_SIZE 1024
+#endif
+
+/* Flags for pointer conversions */
+#define SWIG_POINTER_DISOWN 0x1
+#define SWIG_CAST_NEW_MEMORY 0x2
+
+/* Flags for new pointer objects */
+#define SWIG_POINTER_OWN 0x1
+
+
+/*
+ Flags/methods for returning states.
+
+ The SWIG conversion methods, as ConvertPtr, return an integer
+ that tells if the conversion was successful or not. And if not,
+ an error code can be returned (see swigerrors.swg for the codes).
+
+ Use the following macros/flags to set or process the returning
+ states.
+
+ In old versions of SWIG, code such as the following was usually written:
+
+ if (SWIG_ConvertPtr(obj,vptr,ty.flags) != -1) {
+ // success code
+ } else {
+ //fail code
+ }
+
+ Now you can be more explicit:
+
+ int res = SWIG_ConvertPtr(obj,vptr,ty.flags);
+ if (SWIG_IsOK(res)) {
+ // success code
+ } else {
+ // fail code
+ }
+
+ which is the same really, but now you can also do
+
+ Type *ptr;
+ int res = SWIG_ConvertPtr(obj,(void **)(&ptr),ty.flags);
+ if (SWIG_IsOK(res)) {
+ // success code
+ if (SWIG_IsNewObj(res) {
+ ...
+ delete *ptr;
+ } else {
+ ...
+ }
+ } else {
+ // fail code
+ }
+
+ I.e., now SWIG_ConvertPtr can return new objects and you can
+ identify the case and take care of the deallocation. Of course that
+ also requires SWIG_ConvertPtr to return new result values, such as
+
+ int SWIG_ConvertPtr(obj, ptr,...) {
+ if (<obj is ok>) {
+ if (<need new object>) {
+ *ptr = <ptr to new allocated object>;
+ return SWIG_NEWOBJ;
+ } else {
+ *ptr = <ptr to old object>;
+ return SWIG_OLDOBJ;
+ }
+ } else {
+ return SWIG_BADOBJ;
+ }
+ }
+
+ Of course, returning the plain '0(success)/-1(fail)' still works, but you can be
+ more explicit by returning SWIG_BADOBJ, SWIG_ERROR or any of the
+ SWIG errors code.
+
+ Finally, if the SWIG_CASTRANK_MODE is enabled, the result code
+ allows to return the 'cast rank', for example, if you have this
+
+ int food(double)
+ int fooi(int);
+
+ and you call
+
+ food(1) // cast rank '1' (1 -> 1.0)
+ fooi(1) // cast rank '0'
+
+ just use the SWIG_AddCast()/SWIG_CheckState()
+*/
+
+#define SWIG_OK (0)
+#define SWIG_ERROR (-1)
+#define SWIG_IsOK(r) (r >= 0)
+#define SWIG_ArgError(r) ((r != SWIG_ERROR) ? r : SWIG_TypeError)
+
+/* The CastRankLimit says how many bits are used for the cast rank */
+#define SWIG_CASTRANKLIMIT (1 << 8)
+/* The NewMask denotes the object was created (using new/malloc) */
+#define SWIG_NEWOBJMASK (SWIG_CASTRANKLIMIT << 1)
+/* The TmpMask is for in/out typemaps that use temporal objects */
+#define SWIG_TMPOBJMASK (SWIG_NEWOBJMASK << 1)
+/* Simple returning values */
+#define SWIG_BADOBJ (SWIG_ERROR)
+#define SWIG_OLDOBJ (SWIG_OK)
+#define SWIG_NEWOBJ (SWIG_OK | SWIG_NEWOBJMASK)
+#define SWIG_TMPOBJ (SWIG_OK | SWIG_TMPOBJMASK)
+/* Check, add and del mask methods */
+#define SWIG_AddNewMask(r) (SWIG_IsOK(r) ? (r | SWIG_NEWOBJMASK) : r)
+#define SWIG_DelNewMask(r) (SWIG_IsOK(r) ? (r & ~SWIG_NEWOBJMASK) : r)
+#define SWIG_IsNewObj(r) (SWIG_IsOK(r) && (r & SWIG_NEWOBJMASK))
+#define SWIG_AddTmpMask(r) (SWIG_IsOK(r) ? (r | SWIG_TMPOBJMASK) : r)
+#define SWIG_DelTmpMask(r) (SWIG_IsOK(r) ? (r & ~SWIG_TMPOBJMASK) : r)
+#define SWIG_IsTmpObj(r) (SWIG_IsOK(r) && (r & SWIG_TMPOBJMASK))
+
+/* Cast-Rank Mode */
+#if defined(SWIG_CASTRANK_MODE)
+# ifndef SWIG_TypeRank
+# define SWIG_TypeRank unsigned long
+# endif
+# ifndef SWIG_MAXCASTRANK /* Default cast allowed */
+# define SWIG_MAXCASTRANK (2)
+# endif
+# define SWIG_CASTRANKMASK ((SWIG_CASTRANKLIMIT) -1)
+# define SWIG_CastRank(r) (r & SWIG_CASTRANKMASK)
+SWIGINTERNINLINE int SWIG_AddCast(int r) {
+ return SWIG_IsOK(r) ? ((SWIG_CastRank(r) < SWIG_MAXCASTRANK) ? (r + 1) : SWIG_ERROR) : r;
+}
+SWIGINTERNINLINE int SWIG_CheckState(int r) {
+ return SWIG_IsOK(r) ? SWIG_CastRank(r) + 1 : 0;
+}
+#else /* no cast-rank mode */
+# define SWIG_AddCast
+# define SWIG_CheckState(r) (SWIG_IsOK(r) ? 1 : 0)
+#endif
+
+
+#include <string.h>
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+typedef void *(*swig_converter_func)(void *, int *);
+typedef struct swig_type_info *(*swig_dycast_func)(void **);
+
+/* Structure to store information on one type */
+typedef struct swig_type_info {
+ const char *name; /* mangled name of this type */
+ const char *str; /* human readable name of this type */
+ swig_dycast_func dcast; /* dynamic cast function down a hierarchy */
+ struct swig_cast_info *cast; /* linked list of types that can cast into this type */
+ void *clientdata; /* language specific type data */
+ int owndata; /* flag if the structure owns the clientdata */
+} swig_type_info;
+
+/* Structure to store a type and conversion function used for casting */
+typedef struct swig_cast_info {
+ swig_type_info *type; /* pointer to type that is equivalent to this type */
+ swig_converter_func converter; /* function to cast the void pointers */
+ struct swig_cast_info *next; /* pointer to next cast in linked list */
+ struct swig_cast_info *prev; /* pointer to the previous cast */
+} swig_cast_info;
+
+/* Structure used to store module information
+ * Each module generates one structure like this, and the runtime collects
+ * all of these structures and stores them in a circularly linked list.*/
+typedef struct swig_module_info {
+ swig_type_info **types; /* Array of pointers to swig_type_info structures that are in this module */
+ size_t size; /* Number of types in this module */
+ struct swig_module_info *next; /* Pointer to next element in circularly linked list */
+ swig_type_info **type_initial; /* Array of initially generated type structures */
+ swig_cast_info **cast_initial; /* Array of initially generated casting structures */
+ void *clientdata; /* Language specific module data */
+} swig_module_info;
+
+/*
+ Compare two type names skipping the space characters, therefore
+ "char*" == "char *" and "Class<int>" == "Class<int >", etc.
+
+ Return 0 when the two name types are equivalent, as in
+ strncmp, but skipping ' '.
+*/
+SWIGRUNTIME int
+SWIG_TypeNameComp(const char *f1, const char *l1,
+ const char *f2, const char *l2) {
+ for (;(f1 != l1) && (f2 != l2); ++f1, ++f2) {
+ while ((*f1 == ' ') && (f1 != l1)) ++f1;
+ while ((*f2 == ' ') && (f2 != l2)) ++f2;
+ if (*f1 != *f2) return (*f1 > *f2) ? 1 : -1;
+ }
+ return (int)((l1 - f1) - (l2 - f2));
+}
+
+/*
+ Check type equivalence in a name list like <name1>|<name2>|...
+ Return 0 if not equal, 1 if equal
+*/
+SWIGRUNTIME int
+SWIG_TypeEquiv(const char *nb, const char *tb) {
+ int equiv = 0;
+ const char* te = tb + strlen(tb);
+ const char* ne = nb;
+ while (!equiv && *ne) {
+ for (nb = ne; *ne; ++ne) {
+ if (*ne == '|') break;
+ }
+ equiv = (SWIG_TypeNameComp(nb, ne, tb, te) == 0) ? 1 : 0;
+ if (*ne) ++ne;
+ }
+ return equiv;
+}
+
+/*
+ Check type equivalence in a name list like <name1>|<name2>|...
+ Return 0 if equal, -1 if nb < tb, 1 if nb > tb
+*/
+SWIGRUNTIME int
+SWIG_TypeCompare(const char *nb, const char *tb) {
+ int equiv = 0;
+ const char* te = tb + strlen(tb);
+ const char* ne = nb;
+ while (!equiv && *ne) {
+ for (nb = ne; *ne; ++ne) {
+ if (*ne == '|') break;
+ }
+ equiv = (SWIG_TypeNameComp(nb, ne, tb, te) == 0) ? 1 : 0;
+ if (*ne) ++ne;
+ }
+ return equiv;
+}
+
+
+/*
+ Check the typename
+*/
+SWIGRUNTIME swig_cast_info *
+SWIG_TypeCheck(const char *c, swig_type_info *ty) {
+ if (ty) {
+ swig_cast_info *iter = ty->cast;
+ while (iter) {
+ if (strcmp(iter->type->name, c) == 0) {
+ if (iter == ty->cast)
+ return iter;
+ /* Move iter to the top of the linked list */
+ iter->prev->next = iter->next;
+ if (iter->next)
+ iter->next->prev = iter->prev;
+ iter->next = ty->cast;
+ iter->prev = 0;
+ if (ty->cast) ty->cast->prev = iter;
+ ty->cast = iter;
+ return iter;
+ }
+ iter = iter->next;
+ }
+ }
+ return 0;
+}
+
+/*
+ Identical to SWIG_TypeCheck, except strcmp is replaced with a pointer comparison
+*/
+SWIGRUNTIME swig_cast_info *
+SWIG_TypeCheckStruct(swig_type_info *from, swig_type_info *ty) {
+ if (ty) {
+ swig_cast_info *iter = ty->cast;
+ while (iter) {
+ if (iter->type == from) {
+ if (iter == ty->cast)
+ return iter;
+ /* Move iter to the top of the linked list */
+ iter->prev->next = iter->next;
+ if (iter->next)
+ iter->next->prev = iter->prev;
+ iter->next = ty->cast;
+ iter->prev = 0;
+ if (ty->cast) ty->cast->prev = iter;
+ ty->cast = iter;
+ return iter;
+ }
+ iter = iter->next;
+ }
+ }
+ return 0;
+}
+
+/*
+ Cast a pointer up an inheritance hierarchy
+*/
+SWIGRUNTIMEINLINE void *
+SWIG_TypeCast(swig_cast_info *ty, void *ptr, int *newmemory) {
+ return ((!ty) || (!ty->converter)) ? ptr : (*ty->converter)(ptr, newmemory);
+}
+
+/*
+ Dynamic pointer casting. Down an inheritance hierarchy
+*/
+SWIGRUNTIME swig_type_info *
+SWIG_TypeDynamicCast(swig_type_info *ty, void **ptr) {
+ swig_type_info *lastty = ty;
+ if (!ty || !ty->dcast) return ty;
+ while (ty && (ty->dcast)) {
+ ty = (*ty->dcast)(ptr);
+ if (ty) lastty = ty;
+ }
+ return lastty;
+}
+
+/*
+ Return the name associated with this type
+*/
+SWIGRUNTIMEINLINE const char *
+SWIG_TypeName(const swig_type_info *ty) {
+ return ty->name;
+}
+
+/*
+ Return the pretty name associated with this type,
+ that is an unmangled type name in a form presentable to the user.
+*/
+SWIGRUNTIME const char *
+SWIG_TypePrettyName(const swig_type_info *type) {
+ /* The "str" field contains the equivalent pretty names of the
+ type, separated by vertical-bar characters. We choose
+ to print the last name, as it is often (?) the most
+ specific. */
+ if (!type) return NULL;
+ if (type->str != NULL) {
+ const char *last_name = type->str;
+ const char *s;
+ for (s = type->str; *s; s++)
+ if (*s == '|') last_name = s+1;
+ return last_name;
+ }
+ else
+ return type->name;
+}
+
+/*
+ Set the clientdata field for a type
+*/
+SWIGRUNTIME void
+SWIG_TypeClientData(swig_type_info *ti, void *clientdata) {
+ swig_cast_info *cast = ti->cast;
+ /* if (ti->clientdata == clientdata) return; */
+ ti->clientdata = clientdata;
+
+ while (cast) {
+ if (!cast->converter) {
+ swig_type_info *tc = cast->type;
+ if (!tc->clientdata) {
+ SWIG_TypeClientData(tc, clientdata);
+ }
+ }
+ cast = cast->next;
+ }
+}
+SWIGRUNTIME void
+SWIG_TypeNewClientData(swig_type_info *ti, void *clientdata) {
+ SWIG_TypeClientData(ti, clientdata);
+ ti->owndata = 1;
+}
+
+/*
+ Search for a swig_type_info structure only by mangled name
+ Search is a O(log #types)
+
+ We start searching at module start, and finish searching when start == end.
+ Note: if start == end at the beginning of the function, we go all the way around
+ the circular list.
+*/
+SWIGRUNTIME swig_type_info *
+SWIG_MangledTypeQueryModule(swig_module_info *start,
+ swig_module_info *end,
+ const char *name) {
+ swig_module_info *iter = start;
+ do {
+ if (iter->size) {
+ register size_t l = 0;
+ register size_t r = iter->size - 1;
+ do {
+ /* since l+r >= 0, we can (>> 1) instead (/ 2) */
+ register size_t i = (l + r) >> 1;
+ const char *iname = iter->types[i]->name;
+ if (iname) {
+ register int compare = strcmp(name, iname);
+ if (compare == 0) {
+ return iter->types[i];
+ } else if (compare < 0) {
+ if (i) {
+ r = i - 1;
+ } else {
+ break;
+ }
+ } else if (compare > 0) {
+ l = i + 1;
+ }
+ } else {
+ break; /* should never happen */
+ }
+ } while (l <= r);
+ }
+ iter = iter->next;
+ } while (iter != end);
+ return 0;
+}
+
+/*
+ Search for a swig_type_info structure for either a mangled name or a human readable name.
+ It first searches the mangled names of the types, which is a O(log #types)
+ If a type is not found it then searches the human readable names, which is O(#types).
+
+ We start searching at module start, and finish searching when start == end.
+ Note: if start == end at the beginning of the function, we go all the way around
+ the circular list.
+*/
+SWIGRUNTIME swig_type_info *
+SWIG_TypeQueryModule(swig_module_info *start,
+ swig_module_info *end,
+ const char *name) {
+ /* STEP 1: Search the name field using binary search */
+ swig_type_info *ret = SWIG_MangledTypeQueryModule(start, end, name);
+ if (ret) {
+ return ret;
+ } else {
+ /* STEP 2: If the type hasn't been found, do a complete search
+ of the str field (the human readable name) */
+ swig_module_info *iter = start;
+ do {
+ register size_t i = 0;
+ for (; i < iter->size; ++i) {
+ if (iter->types[i]->str && (SWIG_TypeEquiv(iter->types[i]->str, name)))
+ return iter->types[i];
+ }
+ iter = iter->next;
+ } while (iter != end);
+ }
+
+ /* neither found a match */
+ return 0;
+}
+
+/*
+ Pack binary data into a string
+*/
+SWIGRUNTIME char *
+SWIG_PackData(char *c, void *ptr, size_t sz) {
+ static const char hex[17] = "0123456789abcdef";
+ register const unsigned char *u = (unsigned char *) ptr;
+ register const unsigned char *eu = u + sz;
+ for (; u != eu; ++u) {
+ register unsigned char uu = *u;
+ *(c++) = hex[(uu & 0xf0) >> 4];
+ *(c++) = hex[uu & 0xf];
+ }
+ return c;
+}
+
+/*
+ Unpack binary data from a string
+*/
+SWIGRUNTIME const char *
+SWIG_UnpackData(const char *c, void *ptr, size_t sz) {
+ register unsigned char *u = (unsigned char *) ptr;
+ register const unsigned char *eu = u + sz;
+ for (; u != eu; ++u) {
+ register char d = *(c++);
+ register unsigned char uu;
+ if ((d >= '0') && (d <= '9'))
+ uu = ((d - '0') << 4);
+ else if ((d >= 'a') && (d <= 'f'))
+ uu = ((d - ('a'-10)) << 4);
+ else
+ return (char *) 0;
+ d = *(c++);
+ if ((d >= '0') && (d <= '9'))
+ uu |= (d - '0');
+ else if ((d >= 'a') && (d <= 'f'))
+ uu |= (d - ('a'-10));
+ else
+ return (char *) 0;
+ *u = uu;
+ }
+ return c;
+}
+
+/*
+ Pack 'void *' into a string buffer.
+*/
+SWIGRUNTIME char *
+SWIG_PackVoidPtr(char *buff, void *ptr, const char *name, size_t bsz) {
+ char *r = buff;
+ if ((2*sizeof(void *) + 2) > bsz) return 0;
+ *(r++) = '_';
+ r = SWIG_PackData(r,&ptr,sizeof(void *));
+ if (strlen(name) + 1 > (bsz - (r - buff))) return 0;
+ strcpy(r,name);
+ return buff;
+}
+
+SWIGRUNTIME const char *
+SWIG_UnpackVoidPtr(const char *c, void **ptr, const char *name) {
+ if (*c != '_') {
+ if (strcmp(c,"NULL") == 0) {
+ *ptr = (void *) 0;
+ return name;
+ } else {
+ return 0;
+ }
+ }
+ return SWIG_UnpackData(++c,ptr,sizeof(void *));
+}
+
+SWIGRUNTIME char *
+SWIG_PackDataName(char *buff, void *ptr, size_t sz, const char *name, size_t bsz) {
+ char *r = buff;
+ size_t lname = (name ? strlen(name) : 0);
+ if ((2*sz + 2 + lname) > bsz) return 0;
+ *(r++) = '_';
+ r = SWIG_PackData(r,ptr,sz);
+ if (lname) {
+ strncpy(r,name,lname+1);
+ } else {
+ *r = 0;
+ }
+ return buff;
+}
+
+SWIGRUNTIME const char *
+SWIG_UnpackDataName(const char *c, void *ptr, size_t sz, const char *name) {
+ if (*c != '_') {
+ if (strcmp(c,"NULL") == 0) {
+ memset(ptr,0,sz);
+ return name;
+ } else {
+ return 0;
+ }
+ }
+ return SWIG_UnpackData(++c,ptr,sz);
+}
+
+#ifdef __cplusplus
+}
+#endif
+
+/* Errors in SWIG */
+#define SWIG_UnknownError -1
+#define SWIG_IOError -2
+#define SWIG_RuntimeError -3
+#define SWIG_IndexError -4
+#define SWIG_TypeError -5
+#define SWIG_DivisionByZero -6
+#define SWIG_OverflowError -7
+#define SWIG_SyntaxError -8
+#define SWIG_ValueError -9
+#define SWIG_SystemError -10
+#define SWIG_AttributeError -11
+#define SWIG_MemoryError -12
+#define SWIG_NullReferenceError -13
+
+
+
+/* Compatibility macros for Python 3 */
+#if PY_VERSION_HEX >= 0x03000000
+
+#define PyClass_Check(obj) PyObject_IsInstance(obj, (PyObject *)&PyType_Type)
+#define PyInt_Check(x) PyLong_Check(x)
+#define PyInt_AsLong(x) PyLong_AsLong(x)
+#define PyInt_FromLong(x) PyLong_FromLong(x)
+#define PyInt_FromSize_t(x) PyLong_FromSize_t(x)
+#define PyString_Check(name) PyBytes_Check(name)
+#define PyString_FromString(x) PyUnicode_FromString(x)
+#define PyString_Format(fmt, args) PyUnicode_Format(fmt, args)
+#define PyString_AsString(str) PyBytes_AsString(str)
+#define PyString_Size(str) PyBytes_Size(str)
+#define PyString_InternFromString(key) PyUnicode_InternFromString(key)
+#define Py_TPFLAGS_HAVE_CLASS Py_TPFLAGS_BASETYPE
+#define PyString_AS_STRING(x) PyUnicode_AS_STRING(x)
+#define _PyLong_FromSsize_t(x) PyLong_FromSsize_t(x)
+
+#endif
+
+#ifndef Py_TYPE
+# define Py_TYPE(op) ((op)->ob_type)
+#endif
+
+/* SWIG APIs for compatibility of both Python 2 & 3 */
+
+#if PY_VERSION_HEX >= 0x03000000
+# define SWIG_Python_str_FromFormat PyUnicode_FromFormat
+#else
+# define SWIG_Python_str_FromFormat PyString_FromFormat
+#endif
+
+
+/* Warning: This function will allocate a new string in Python 3,
+ * so please call SWIG_Python_str_DelForPy3(x) to free the space.
+ */
+SWIGINTERN char*
+SWIG_Python_str_AsChar(PyObject *str)
+{
+#if PY_VERSION_HEX >= 0x03000000
+ char *cstr;
+ char *newstr;
+ Py_ssize_t len;
+ str = PyUnicode_AsUTF8String(str);
+ PyBytes_AsStringAndSize(str, &cstr, &len);
+ newstr = (char *) malloc(len+1);
+ memcpy(newstr, cstr, len+1);
+ Py_XDECREF(str);
+ return newstr;
+#else
+ return PyString_AsString(str);
+#endif
+}
+
+#if PY_VERSION_HEX >= 0x03000000
+# define SWIG_Python_str_DelForPy3(x) free( (void*) (x) )
+#else
+# define SWIG_Python_str_DelForPy3(x)
+#endif
+
+
+SWIGINTERN PyObject*
+SWIG_Python_str_FromChar(const char *c)
+{
+#if PY_VERSION_HEX >= 0x03000000
+ return PyUnicode_FromString(c);
+#else
+ return PyString_FromString(c);
+#endif
+}
+
+/* Add PyOS_snprintf for old Pythons */
+#if PY_VERSION_HEX < 0x02020000
+# if defined(_MSC_VER) || defined(__BORLANDC__) || defined(_WATCOM)
+# define PyOS_snprintf _snprintf
+# else
+# define PyOS_snprintf snprintf
+# endif
+#endif
+
+/* A crude PyString_FromFormat implementation for old Pythons */
+#if PY_VERSION_HEX < 0x02020000
+
+#ifndef SWIG_PYBUFFER_SIZE
+# define SWIG_PYBUFFER_SIZE 1024
+#endif
+
+static PyObject *
+PyString_FromFormat(const char *fmt, ...) {
+ va_list ap;
+ char buf[SWIG_PYBUFFER_SIZE * 2];
+ int res;
+ va_start(ap, fmt);
+ res = vsnprintf(buf, sizeof(buf), fmt, ap);
+ va_end(ap);
+ return (res < 0 || res >= (int)sizeof(buf)) ? 0 : PyString_FromString(buf);
+}
+#endif
+
+/* Add PyObject_Del for old Pythons */
+#if PY_VERSION_HEX < 0x01060000
+# define PyObject_Del(op) PyMem_DEL((op))
+#endif
+#ifndef PyObject_DEL
+# define PyObject_DEL PyObject_Del
+#endif
+
+/* A crude PyExc_StopIteration exception for old Pythons */
+#if PY_VERSION_HEX < 0x02020000
+# ifndef PyExc_StopIteration
+# define PyExc_StopIteration PyExc_RuntimeError
+# endif
+# ifndef PyObject_GenericGetAttr
+# define PyObject_GenericGetAttr 0
+# endif
+#endif
+
+/* Py_NotImplemented is defined in 2.1 and up. */
+#if PY_VERSION_HEX < 0x02010000
+# ifndef Py_NotImplemented
+# define Py_NotImplemented PyExc_RuntimeError
+# endif
+#endif
+
+/* A crude PyString_AsStringAndSize implementation for old Pythons */
+#if PY_VERSION_HEX < 0x02010000
+# ifndef PyString_AsStringAndSize
+# define PyString_AsStringAndSize(obj, s, len) {*s = PyString_AsString(obj); *len = *s ? strlen(*s) : 0;}
+# endif
+#endif
+
+/* PySequence_Size for old Pythons */
+#if PY_VERSION_HEX < 0x02000000
+# ifndef PySequence_Size
+# define PySequence_Size PySequence_Length
+# endif
+#endif
+
+/* PyBool_FromLong for old Pythons */
+#if PY_VERSION_HEX < 0x02030000
+static
+PyObject *PyBool_FromLong(long ok)
+{
+ PyObject *result = ok ? Py_True : Py_False;
+ Py_INCREF(result);
+ return result;
+}
+#endif
+
+/* Py_ssize_t for old Pythons */
+/* This code is as recommended by: */
+/* http://www.python.org/dev/peps/pep-0353/#conversion-guidelines */
+#if PY_VERSION_HEX < 0x02050000 && !defined(PY_SSIZE_T_MIN)
+typedef int Py_ssize_t;
+# define PY_SSIZE_T_MAX INT_MAX
+# define PY_SSIZE_T_MIN INT_MIN
+typedef inquiry lenfunc;
+typedef intargfunc ssizeargfunc;
+typedef intintargfunc ssizessizeargfunc;
+typedef intobjargproc ssizeobjargproc;
+typedef intintobjargproc ssizessizeobjargproc;
+typedef getreadbufferproc readbufferproc;
+typedef getwritebufferproc writebufferproc;
+typedef getsegcountproc segcountproc;
+typedef getcharbufferproc charbufferproc;
+static long PyNumber_AsSsize_t (PyObject *x, void *SWIGUNUSEDPARM(exc))
+{
+ long result = 0;
+ PyObject *i = PyNumber_Int(x);
+ if (i) {
+ result = PyInt_AsLong(i);
+ Py_DECREF(i);
+ }
+ return result;
+}
+#endif
+
+#if PY_VERSION_HEX < 0x02040000
+#define Py_VISIT(op) \
+ do { \
+ if (op) { \
+ int vret = visit((op), arg); \
+ if (vret) \
+ return vret; \
+ } \
+ } while (0)
+#endif
+
+#if PY_VERSION_HEX < 0x02030000
+typedef struct {
+ PyTypeObject type;
+ PyNumberMethods as_number;
+ PyMappingMethods as_mapping;
+ PySequenceMethods as_sequence;
+ PyBufferProcs as_buffer;
+ PyObject *name, *slots;
+} PyHeapTypeObject;
+#endif
+
+#if PY_VERSION_HEX < 0x02030000
+typedef destructor freefunc;
+#endif
+
+#if ((PY_MAJOR_VERSION == 2 && PY_MINOR_VERSION > 6) || \
+ (PY_MAJOR_VERSION == 3 && PY_MINOR_VERSION > 0) || \
+ (PY_MAJOR_VERSION > 3))
+# define SWIGPY_USE_CAPSULE
+# define SWIGPY_CAPSULE_NAME ((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION ".type_pointer_capsule" SWIG_TYPE_TABLE_NAME)
+#endif
+
+#if PY_VERSION_HEX < 0x03020000
+#define PyDescr_TYPE(x) (((PyDescrObject *)(x))->d_type)
+#define PyDescr_NAME(x) (((PyDescrObject *)(x))->d_name)
+#endif
+
+/* -----------------------------------------------------------------------------
+ * error manipulation
+ * ----------------------------------------------------------------------------- */
+
+SWIGRUNTIME PyObject*
+SWIG_Python_ErrorType(int code) {
+ PyObject* type = 0;
+ switch(code) {
+ case SWIG_MemoryError:
+ type = PyExc_MemoryError;
+ break;
+ case SWIG_IOError:
+ type = PyExc_IOError;
+ break;
+ case SWIG_RuntimeError:
+ type = PyExc_RuntimeError;
+ break;
+ case SWIG_IndexError:
+ type = PyExc_IndexError;
+ break;
+ case SWIG_TypeError:
+ type = PyExc_TypeError;
+ break;
+ case SWIG_DivisionByZero:
+ type = PyExc_ZeroDivisionError;
+ break;
+ case SWIG_OverflowError:
+ type = PyExc_OverflowError;
+ break;
+ case SWIG_SyntaxError:
+ type = PyExc_SyntaxError;
+ break;
+ case SWIG_ValueError:
+ type = PyExc_ValueError;
+ break;
+ case SWIG_SystemError:
+ type = PyExc_SystemError;
+ break;
+ case SWIG_AttributeError:
+ type = PyExc_AttributeError;
+ break;
+ default:
+ type = PyExc_RuntimeError;
+ }
+ return type;
+}
+
+
+SWIGRUNTIME void
+SWIG_Python_AddErrorMsg(const char* mesg)
+{
+ PyObject *type = 0;
+ PyObject *value = 0;
+ PyObject *traceback = 0;
+
+ if (PyErr_Occurred()) PyErr_Fetch(&type, &value, &traceback);
+ if (value) {
+ char *tmp;
+ PyObject *old_str = PyObject_Str(value);
+ PyErr_Clear();
+ Py_XINCREF(type);
+
+ PyErr_Format(type, "%s %s", tmp = SWIG_Python_str_AsChar(old_str), mesg);
+ SWIG_Python_str_DelForPy3(tmp);
+ Py_DECREF(old_str);
+ Py_DECREF(value);
+ } else {
+ PyErr_SetString(PyExc_RuntimeError, mesg);
+ }
+}
+
+#if defined(SWIG_PYTHON_NO_THREADS)
+# if defined(SWIG_PYTHON_THREADS)
+# undef SWIG_PYTHON_THREADS
+# endif
+#endif
+#if defined(SWIG_PYTHON_THREADS) /* Threading support is enabled */
+# if !defined(SWIG_PYTHON_USE_GIL) && !defined(SWIG_PYTHON_NO_USE_GIL)
+# if (PY_VERSION_HEX >= 0x02030000) /* For 2.3 or later, use the PyGILState calls */
+# define SWIG_PYTHON_USE_GIL
+# endif
+# endif
+# if defined(SWIG_PYTHON_USE_GIL) /* Use PyGILState threads calls */
+# ifndef SWIG_PYTHON_INITIALIZE_THREADS
+# define SWIG_PYTHON_INITIALIZE_THREADS PyEval_InitThreads()
+# endif
+# ifdef __cplusplus /* C++ code */
+ class SWIG_Python_Thread_Block {
+ bool status;
+ PyGILState_STATE state;
+ public:
+ void end() { if (status) { PyGILState_Release(state); status = false;} }
+ SWIG_Python_Thread_Block() : status(true), state(PyGILState_Ensure()) {}
+ ~SWIG_Python_Thread_Block() { end(); }
+ };
+ class SWIG_Python_Thread_Allow {
+ bool status;
+ PyThreadState *save;
+ public:
+ void end() { if (status) { PyEval_RestoreThread(save); status = false; }}
+ SWIG_Python_Thread_Allow() : status(true), save(PyEval_SaveThread()) {}
+ ~SWIG_Python_Thread_Allow() { end(); }
+ };
+# define SWIG_PYTHON_THREAD_BEGIN_BLOCK SWIG_Python_Thread_Block _swig_thread_block
+# define SWIG_PYTHON_THREAD_END_BLOCK _swig_thread_block.end()
+# define SWIG_PYTHON_THREAD_BEGIN_ALLOW SWIG_Python_Thread_Allow _swig_thread_allow
+# define SWIG_PYTHON_THREAD_END_ALLOW _swig_thread_allow.end()
+# else /* C code */
+# define SWIG_PYTHON_THREAD_BEGIN_BLOCK PyGILState_STATE _swig_thread_block = PyGILState_Ensure()
+# define SWIG_PYTHON_THREAD_END_BLOCK PyGILState_Release(_swig_thread_block)
+# define SWIG_PYTHON_THREAD_BEGIN_ALLOW PyThreadState *_swig_thread_allow = PyEval_SaveThread()
+# define SWIG_PYTHON_THREAD_END_ALLOW PyEval_RestoreThread(_swig_thread_allow)
+# endif
+# else /* Old thread way, not implemented, user must provide it */
+# if !defined(SWIG_PYTHON_INITIALIZE_THREADS)
+# define SWIG_PYTHON_INITIALIZE_THREADS
+# endif
+# if !defined(SWIG_PYTHON_THREAD_BEGIN_BLOCK)
+# define SWIG_PYTHON_THREAD_BEGIN_BLOCK
+# endif
+# if !defined(SWIG_PYTHON_THREAD_END_BLOCK)
+# define SWIG_PYTHON_THREAD_END_BLOCK
+# endif
+# if !defined(SWIG_PYTHON_THREAD_BEGIN_ALLOW)
+# define SWIG_PYTHON_THREAD_BEGIN_ALLOW
+# endif
+# if !defined(SWIG_PYTHON_THREAD_END_ALLOW)
+# define SWIG_PYTHON_THREAD_END_ALLOW
+# endif
+# endif
+#else /* No thread support */
+# define SWIG_PYTHON_INITIALIZE_THREADS
+# define SWIG_PYTHON_THREAD_BEGIN_BLOCK
+# define SWIG_PYTHON_THREAD_END_BLOCK
+# define SWIG_PYTHON_THREAD_BEGIN_ALLOW
+# define SWIG_PYTHON_THREAD_END_ALLOW
+#endif
+
+/* -----------------------------------------------------------------------------
+ * Python API portion that goes into the runtime
+ * ----------------------------------------------------------------------------- */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* -----------------------------------------------------------------------------
+ * Constant declarations
+ * ----------------------------------------------------------------------------- */
+
+/* Constant Types */
+#define SWIG_PY_POINTER 4
+#define SWIG_PY_BINARY 5
+
+/* Constant information structure */
+typedef struct swig_const_info {
+ int type;
+ char *name;
+ long lvalue;
+ double dvalue;
+ void *pvalue;
+ swig_type_info **ptype;
+} swig_const_info;
+
+
+/* -----------------------------------------------------------------------------
+ * Wrapper of PyInstanceMethod_New() used in Python 3
+ * It is exported to the generated module, used for -fastproxy
+ * ----------------------------------------------------------------------------- */
+#if PY_VERSION_HEX >= 0x03000000
+SWIGRUNTIME PyObject* SWIG_PyInstanceMethod_New(PyObject *SWIGUNUSEDPARM(self), PyObject *func)
+{
+ return PyInstanceMethod_New(func);
+}
+#else
+SWIGRUNTIME PyObject* SWIG_PyInstanceMethod_New(PyObject *SWIGUNUSEDPARM(self), PyObject *SWIGUNUSEDPARM(func))
+{
+ return NULL;
+}
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+
+
+/* -----------------------------------------------------------------------------
+ * pyrun.swg
+ *
+ * This file contains the runtime support for Python modules
+ * and includes code for managing global variables and pointer
+ * type checking.
+ *
+ * ----------------------------------------------------------------------------- */
+
+/* Common SWIG API */
+
+/* for raw pointers */
+#define SWIG_Python_ConvertPtr(obj, pptr, type, flags) SWIG_Python_ConvertPtrAndOwn(obj, pptr, type, flags, 0)
+#define SWIG_ConvertPtr(obj, pptr, type, flags) SWIG_Python_ConvertPtr(obj, pptr, type, flags)
+#define SWIG_ConvertPtrAndOwn(obj,pptr,type,flags,own) SWIG_Python_ConvertPtrAndOwn(obj, pptr, type, flags, own)
+
+#ifdef SWIGPYTHON_BUILTIN
+#define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(self, ptr, type, flags)
+#else
+#define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
+#endif
+
+#define SWIG_InternalNewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags)
+
+#define SWIG_CheckImplicit(ty) SWIG_Python_CheckImplicit(ty)
+#define SWIG_AcquirePtr(ptr, src) SWIG_Python_AcquirePtr(ptr, src)
+#define swig_owntype int
+
+/* for raw packed data */
+#define SWIG_ConvertPacked(obj, ptr, sz, ty) SWIG_Python_ConvertPacked(obj, ptr, sz, ty)
+#define SWIG_NewPackedObj(ptr, sz, type) SWIG_Python_NewPackedObj(ptr, sz, type)
+
+/* for class or struct pointers */
+#define SWIG_ConvertInstance(obj, pptr, type, flags) SWIG_ConvertPtr(obj, pptr, type, flags)
+#define SWIG_NewInstanceObj(ptr, type, flags) SWIG_NewPointerObj(ptr, type, flags)
+
+/* for C or C++ function pointers */
+#define SWIG_ConvertFunctionPtr(obj, pptr, type) SWIG_Python_ConvertFunctionPtr(obj, pptr, type)
+#define SWIG_NewFunctionPtrObj(ptr, type) SWIG_Python_NewPointerObj(NULL, ptr, type, 0)
+
+/* for C++ member pointers, ie, member methods */
+#define SWIG_ConvertMember(obj, ptr, sz, ty) SWIG_Python_ConvertPacked(obj, ptr, sz, ty)
+#define SWIG_NewMemberObj(ptr, sz, type) SWIG_Python_NewPackedObj(ptr, sz, type)
+
+
+/* Runtime API */
+
+#define SWIG_GetModule(clientdata) SWIG_Python_GetModule()
+#define SWIG_SetModule(clientdata, pointer) SWIG_Python_SetModule(pointer)
+#define SWIG_NewClientData(obj) SwigPyClientData_New(obj)
+
+#define SWIG_SetErrorObj SWIG_Python_SetErrorObj
+#define SWIG_SetErrorMsg SWIG_Python_SetErrorMsg
+#define SWIG_ErrorType(code) SWIG_Python_ErrorType(code)
+#define SWIG_Error(code, msg) SWIG_Python_SetErrorMsg(SWIG_ErrorType(code), msg)
+#define SWIG_fail goto fail
+
+
+/* Runtime API implementation */
+
+/* Error manipulation */
+
+SWIGINTERN void
+SWIG_Python_SetErrorObj(PyObject *errtype, PyObject *obj) {
+ SWIG_PYTHON_THREAD_BEGIN_BLOCK;
+ PyErr_SetObject(errtype, obj);
+ Py_DECREF(obj);
+ SWIG_PYTHON_THREAD_END_BLOCK;
+}
+
+SWIGINTERN void
+SWIG_Python_SetErrorMsg(PyObject *errtype, const char *msg) {
+ SWIG_PYTHON_THREAD_BEGIN_BLOCK;
+ PyErr_SetString(errtype, msg);
+ SWIG_PYTHON_THREAD_END_BLOCK;
+}
+
+#define SWIG_Python_Raise(obj, type, desc) SWIG_Python_SetErrorObj(SWIG_Python_ExceptionType(desc), obj)
+
+/* Set a constant value */
+
+#if defined(SWIGPYTHON_BUILTIN)
+
+SWIGINTERN void
+SwigPyBuiltin_AddPublicSymbol(PyObject *seq, const char *key) {
+ PyObject *s = PyString_InternFromString(key);
+ PyList_Append(seq, s);
+ Py_DECREF(s);
+}
+
+SWIGINTERN void
+SWIG_Python_SetConstant(PyObject *d, PyObject *public_interface, const char *name, PyObject *obj) {
+#if PY_VERSION_HEX < 0x02030000
+ PyDict_SetItemString(d, (char *)name, obj);
+#else
+ PyDict_SetItemString(d, name, obj);
+#endif
+ Py_DECREF(obj);
+ if (public_interface)
+ SwigPyBuiltin_AddPublicSymbol(public_interface, name);
+}
+
+#else
+
+SWIGINTERN void
+SWIG_Python_SetConstant(PyObject *d, const char *name, PyObject *obj) {
+#if PY_VERSION_HEX < 0x02030000
+ PyDict_SetItemString(d, (char *)name, obj);
+#else
+ PyDict_SetItemString(d, name, obj);
+#endif
+ Py_DECREF(obj);
+}
+
+#endif
+
+/* Append a value to the result obj */
+
+SWIGINTERN PyObject*
+SWIG_Python_AppendOutput(PyObject* result, PyObject* obj) {
+#if !defined(SWIG_PYTHON_OUTPUT_TUPLE)
+ if (!result) {
+ result = obj;
+ } else if (result == Py_None) {
+ Py_DECREF(result);
+ result = obj;
+ } else {
+ if (!PyList_Check(result)) {
+ PyObject *o2 = result;
+ result = PyList_New(1);
+ PyList_SetItem(result, 0, o2);
+ }
+ PyList_Append(result,obj);
+ Py_DECREF(obj);
+ }
+ return result;
+#else
+ PyObject* o2;
+ PyObject* o3;
+ if (!result) {
+ result = obj;
+ } else if (result == Py_None) {
+ Py_DECREF(result);
+ result = obj;
+ } else {
+ if (!PyTuple_Check(result)) {
+ o2 = result;
+ result = PyTuple_New(1);
+ PyTuple_SET_ITEM(result, 0, o2);
+ }
+ o3 = PyTuple_New(1);
+ PyTuple_SET_ITEM(o3, 0, obj);
+ o2 = result;
+ result = PySequence_Concat(o2, o3);
+ Py_DECREF(o2);
+ Py_DECREF(o3);
+ }
+ return result;
+#endif
+}
+
+/* Unpack the argument tuple */
+
+SWIGINTERN int
+SWIG_Python_UnpackTuple(PyObject *args, const char *name, Py_ssize_t min, Py_ssize_t max, PyObject **objs)
+{
+ if (!args) {
+ if (!min && !max) {
+ return 1;
+ } else {
+ PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got none",
+ name, (min == max ? "" : "at least "), (int)min);
+ return 0;
+ }
+ }
+ if (!PyTuple_Check(args)) {
+ if (min <= 1 && max >= 1) {
+ register int i;
+ objs[0] = args;
+ for (i = 1; i < max; ++i) {
+ objs[i] = 0;
+ }
+ return 2;
+ }
+ PyErr_SetString(PyExc_SystemError, "UnpackTuple() argument list is not a tuple");
+ return 0;
+ } else {
+ register Py_ssize_t l = PyTuple_GET_SIZE(args);
+ if (l < min) {
+ PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got %d",
+ name, (min == max ? "" : "at least "), (int)min, (int)l);
+ return 0;
+ } else if (l > max) {
+ PyErr_Format(PyExc_TypeError, "%s expected %s%d arguments, got %d",
+ name, (min == max ? "" : "at most "), (int)max, (int)l);
+ return 0;
+ } else {
+ register int i;
+ for (i = 0; i < l; ++i) {
+ objs[i] = PyTuple_GET_ITEM(args, i);
+ }
+ for (; l < max; ++l) {
+ objs[l] = 0;
+ }
+ return i + 1;
+ }
+ }
+}
+
+/* A functor is a function object with one single object argument */
+#if PY_VERSION_HEX >= 0x02020000
+#define SWIG_Python_CallFunctor(functor, obj) PyObject_CallFunctionObjArgs(functor, obj, NULL);
+#else
+#define SWIG_Python_CallFunctor(functor, obj) PyObject_CallFunction(functor, "O", obj);
+#endif
+
+/*
+ Helper for static pointer initialization for both C and C++ code, for example
+ static PyObject *SWIG_STATIC_POINTER(MyVar) = NewSomething(...);
+*/
+#ifdef __cplusplus
+#define SWIG_STATIC_POINTER(var) var
+#else
+#define SWIG_STATIC_POINTER(var) var = 0; if (!var) var
+#endif
+
+/* -----------------------------------------------------------------------------
+ * Pointer declarations
+ * ----------------------------------------------------------------------------- */
+
+/* Flags for new pointer objects */
+#define SWIG_POINTER_NOSHADOW (SWIG_POINTER_OWN << 1)
+#define SWIG_POINTER_NEW (SWIG_POINTER_NOSHADOW | SWIG_POINTER_OWN)
+
+#define SWIG_POINTER_IMPLICIT_CONV (SWIG_POINTER_DISOWN << 1)
+
+#define SWIG_BUILTIN_TP_INIT (SWIG_POINTER_OWN << 2)
+#define SWIG_BUILTIN_INIT (SWIG_BUILTIN_TP_INIT | SWIG_POINTER_OWN)
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* How to access Py_None */
+#if defined(_WIN32) || defined(__WIN32__) || defined(__CYGWIN__)
+# ifndef SWIG_PYTHON_NO_BUILD_NONE
+# ifndef SWIG_PYTHON_BUILD_NONE
+# define SWIG_PYTHON_BUILD_NONE
+# endif
+# endif
+#endif
+
+#ifdef SWIG_PYTHON_BUILD_NONE
+# ifdef Py_None
+# undef Py_None
+# define Py_None SWIG_Py_None()
+# endif
+SWIGRUNTIMEINLINE PyObject *
+_SWIG_Py_None(void)
+{
+ PyObject *none = Py_BuildValue((char*)"");
+ Py_DECREF(none);
+ return none;
+}
+SWIGRUNTIME PyObject *
+SWIG_Py_None(void)
+{
+ static PyObject *SWIG_STATIC_POINTER(none) = _SWIG_Py_None();
+ return none;
+}
+#endif
+
+/* The python void return value */
+
+SWIGRUNTIMEINLINE PyObject *
+SWIG_Py_Void(void)
+{
+ PyObject *none = Py_None;
+ Py_INCREF(none);
+ return none;
+}
+
+/* SwigPyClientData */
+
+typedef struct {
+ PyObject *klass;
+ PyObject *newraw;
+ PyObject *newargs;
+ PyObject *destroy;
+ int delargs;
+ int implicitconv;
+ PyTypeObject *pytype;
+} SwigPyClientData;
+
+SWIGRUNTIMEINLINE int
+SWIG_Python_CheckImplicit(swig_type_info *ty)
+{
+ SwigPyClientData *data = (SwigPyClientData *)ty->clientdata;
+ return data ? data->implicitconv : 0;
+}
+
+SWIGRUNTIMEINLINE PyObject *
+SWIG_Python_ExceptionType(swig_type_info *desc) {
+ SwigPyClientData *data = desc ? (SwigPyClientData *) desc->clientdata : 0;
+ PyObject *klass = data ? data->klass : 0;
+ return (klass ? klass : PyExc_RuntimeError);
+}
+
+
+SWIGRUNTIME SwigPyClientData *
+SwigPyClientData_New(PyObject* obj)
+{
+ if (!obj) {
+ return 0;
+ } else {
+ SwigPyClientData *data = (SwigPyClientData *)malloc(sizeof(SwigPyClientData));
+ /* the klass element */
+ data->klass = obj;
+ Py_INCREF(data->klass);
+ /* the newraw method and newargs arguments used to create a new raw instance */
+ if (PyClass_Check(obj)) {
+ data->newraw = 0;
+ data->newargs = obj;
+ Py_INCREF(obj);
+ } else {
+#if (PY_VERSION_HEX < 0x02020000)
+ data->newraw = 0;
+#else
+ data->newraw = PyObject_GetAttrString(data->klass, (char *)"__new__");
+#endif
+ if (data->newraw) {
+ Py_INCREF(data->newraw);
+ data->newargs = PyTuple_New(1);
+ PyTuple_SetItem(data->newargs, 0, obj);
+ } else {
+ data->newargs = obj;
+ }
+ Py_INCREF(data->newargs);
+ }
+ /* the destroy method, aka as the C++ delete method */
+ data->destroy = PyObject_GetAttrString(data->klass, (char *)"__swig_destroy__");
+ if (PyErr_Occurred()) {
+ PyErr_Clear();
+ data->destroy = 0;
+ }
+ if (data->destroy) {
+ int flags;
+ Py_INCREF(data->destroy);
+ flags = PyCFunction_GET_FLAGS(data->destroy);
+#ifdef METH_O
+ data->delargs = !(flags & (METH_O));
+#else
+ data->delargs = 0;
+#endif
+ } else {
+ data->delargs = 0;
+ }
+ data->implicitconv = 0;
+ data->pytype = 0;
+ return data;
+ }
+}
+
+SWIGRUNTIME void
+SwigPyClientData_Del(SwigPyClientData *data) {
+ Py_XDECREF(data->newraw);
+ Py_XDECREF(data->newargs);
+ Py_XDECREF(data->destroy);
+}
+
+/* =============== SwigPyObject =====================*/
+
+typedef struct {
+ PyObject_HEAD
+ void *ptr;
+ swig_type_info *ty;
+ int own;
+ PyObject *next;
+#ifdef SWIGPYTHON_BUILTIN
+ PyObject *dict;
+#endif
+} SwigPyObject;
+
+SWIGRUNTIME PyObject *
+SwigPyObject_long(SwigPyObject *v)
+{
+ return PyLong_FromVoidPtr(v->ptr);
+}
+
+SWIGRUNTIME PyObject *
+SwigPyObject_format(const char* fmt, SwigPyObject *v)
+{
+ PyObject *res = NULL;
+ PyObject *args = PyTuple_New(1);
+ if (args) {
+ if (PyTuple_SetItem(args, 0, SwigPyObject_long(v)) == 0) {
+ PyObject *ofmt = SWIG_Python_str_FromChar(fmt);
+ if (ofmt) {
+#if PY_VERSION_HEX >= 0x03000000
+ res = PyUnicode_Format(ofmt,args);
+#else
+ res = PyString_Format(ofmt,args);
+#endif
+ Py_DECREF(ofmt);
+ }
+ Py_DECREF(args);
+ }
+ }
+ return res;
+}
+
+SWIGRUNTIME PyObject *
+SwigPyObject_oct(SwigPyObject *v)
+{
+ return SwigPyObject_format("%o",v);
+}
+
+SWIGRUNTIME PyObject *
+SwigPyObject_hex(SwigPyObject *v)
+{
+ return SwigPyObject_format("%x",v);
+}
+
+SWIGRUNTIME PyObject *
+#ifdef METH_NOARGS
+SwigPyObject_repr(SwigPyObject *v)
+#else
+SwigPyObject_repr(SwigPyObject *v, PyObject *args)
+#endif
+{
+ const char *name = SWIG_TypePrettyName(v->ty);
+ PyObject *repr = SWIG_Python_str_FromFormat("<Swig Object of type '%s' at %p>", (name ? name : "unknown"), (void *)v);
+ if (v->next) {
+# ifdef METH_NOARGS
+ PyObject *nrep = SwigPyObject_repr((SwigPyObject *)v->next);
+# else
+ PyObject *nrep = SwigPyObject_repr((SwigPyObject *)v->next, args);
+# endif
+# if PY_VERSION_HEX >= 0x03000000
+ PyObject *joined = PyUnicode_Concat(repr, nrep);
+ Py_DecRef(repr);
+ Py_DecRef(nrep);
+ repr = joined;
+# else
+ PyString_ConcatAndDel(&repr,nrep);
+# endif
+ }
+ return repr;
+}
+
+SWIGRUNTIME int
+SwigPyObject_print(SwigPyObject *v, FILE *fp, int SWIGUNUSEDPARM(flags))
+{
+ char *str;
+#ifdef METH_NOARGS
+ PyObject *repr = SwigPyObject_repr(v);
+#else
+ PyObject *repr = SwigPyObject_repr(v, NULL);
+#endif
+ if (repr) {
+ str = SWIG_Python_str_AsChar(repr);
+ fputs(str, fp);
+ SWIG_Python_str_DelForPy3(str);
+ Py_DECREF(repr);
+ return 0;
+ } else {
+ return 1;
+ }
+}
+
+SWIGRUNTIME PyObject *
+SwigPyObject_str(SwigPyObject *v)
+{
+ char result[SWIG_BUFFER_SIZE];
+ return SWIG_PackVoidPtr(result, v->ptr, v->ty->name, sizeof(result)) ?
+ SWIG_Python_str_FromChar(result) : 0;
+}
+
+SWIGRUNTIME int
+SwigPyObject_compare(SwigPyObject *v, SwigPyObject *w)
+{
+ void *i = v->ptr;
+ void *j = w->ptr;
+ return (i < j) ? -1 : ((i > j) ? 1 : 0);
+}
+
+/* Added for Python 3.x, would it also be useful for Python 2.x? */
+SWIGRUNTIME PyObject*
+SwigPyObject_richcompare(SwigPyObject *v, SwigPyObject *w, int op)
+{
+ PyObject* res;
+ if( op != Py_EQ && op != Py_NE ) {
+ Py_INCREF(Py_NotImplemented);
+ return Py_NotImplemented;
+ }
+ res = PyBool_FromLong( (SwigPyObject_compare(v, w)==0) == (op == Py_EQ) ? 1 : 0);
+ return res;
+}
+
+
+SWIGRUNTIME PyTypeObject* SwigPyObject_TypeOnce(void);
+
+#ifdef SWIGPYTHON_BUILTIN
+static swig_type_info *SwigPyObject_stype = 0;
+SWIGRUNTIME PyTypeObject*
+SwigPyObject_type(void) {
+ SwigPyClientData *cd;
+ assert(SwigPyObject_stype);
+ cd = (SwigPyClientData*) SwigPyObject_stype->clientdata;
+ assert(cd);
+ assert(cd->pytype);
+ return cd->pytype;
+}
+#else
+SWIGRUNTIME PyTypeObject*
+SwigPyObject_type(void) {
+ static PyTypeObject *SWIG_STATIC_POINTER(type) = SwigPyObject_TypeOnce();
+ return type;
+}
+#endif
+
+SWIGRUNTIMEINLINE int
+SwigPyObject_Check(PyObject *op) {
+#ifdef SWIGPYTHON_BUILTIN
+ PyTypeObject *target_tp = SwigPyObject_type();
+ if (PyType_IsSubtype(op->ob_type, target_tp))
+ return 1;
+ return (strcmp(op->ob_type->tp_name, "SwigPyObject") == 0);
+#else
+ return (Py_TYPE(op) == SwigPyObject_type())
+ || (strcmp(Py_TYPE(op)->tp_name,"SwigPyObject") == 0);
+#endif
+}
+
+SWIGRUNTIME PyObject *
+SwigPyObject_New(void *ptr, swig_type_info *ty, int own);
+
+SWIGRUNTIME void
+SwigPyObject_dealloc(PyObject *v)
+{
+ SwigPyObject *sobj = (SwigPyObject *) v;
+ PyObject *next = sobj->next;
+ if (sobj->own == SWIG_POINTER_OWN) {
+ swig_type_info *ty = sobj->ty;
+ SwigPyClientData *data = ty ? (SwigPyClientData *) ty->clientdata : 0;
+ PyObject *destroy = data ? data->destroy : 0;
+ if (destroy) {
+ /* destroy is always a VARARGS method */
+ PyObject *res;
+ if (data->delargs) {
+ /* we need to create a temporary object to carry the destroy operation */
+ PyObject *tmp = SwigPyObject_New(sobj->ptr, ty, 0);
+ res = SWIG_Python_CallFunctor(destroy, tmp);
+ Py_DECREF(tmp);
+ } else {
+ PyCFunction meth = PyCFunction_GET_FUNCTION(destroy);
+ PyObject *mself = PyCFunction_GET_SELF(destroy);
+ res = ((*meth)(mself, v));
+ }
+ Py_XDECREF(res);
+ }
+#if !defined(SWIG_PYTHON_SILENT_MEMLEAK)
+ else {
+ const char *name = SWIG_TypePrettyName(ty);
+ printf("swig/python detected a memory leak of type '%s', no destructor found.\n", (name ? name : "unknown"));
+ }
+#endif
+ }
+ Py_XDECREF(next);
+ PyObject_DEL(v);
+}
+
+SWIGRUNTIME PyObject*
+SwigPyObject_append(PyObject* v, PyObject* next)
+{
+ SwigPyObject *sobj = (SwigPyObject *) v;
+#ifndef METH_O
+ PyObject *tmp = 0;
+ if (!PyArg_ParseTuple(next,(char *)"O:append", &tmp)) return NULL;
+ next = tmp;
+#endif
+ if (!SwigPyObject_Check(next)) {
+ return NULL;
+ }
+ sobj->next = next;
+ Py_INCREF(next);
+ return SWIG_Py_Void();
+}
+
+SWIGRUNTIME PyObject*
+#ifdef METH_NOARGS
+SwigPyObject_next(PyObject* v)
+#else
+SwigPyObject_next(PyObject* v, PyObject *SWIGUNUSEDPARM(args))
+#endif
+{
+ SwigPyObject *sobj = (SwigPyObject *) v;
+ if (sobj->next) {
+ Py_INCREF(sobj->next);
+ return sobj->next;
+ } else {
+ return SWIG_Py_Void();
+ }
+}
+
+SWIGINTERN PyObject*
+#ifdef METH_NOARGS
+SwigPyObject_disown(PyObject *v)
+#else
+SwigPyObject_disown(PyObject* v, PyObject *SWIGUNUSEDPARM(args))
+#endif
+{
+ SwigPyObject *sobj = (SwigPyObject *)v;
+ sobj->own = 0;
+ return SWIG_Py_Void();
+}
+
+SWIGINTERN PyObject*
+#ifdef METH_NOARGS
+SwigPyObject_acquire(PyObject *v)
+#else
+SwigPyObject_acquire(PyObject* v, PyObject *SWIGUNUSEDPARM(args))
+#endif
+{
+ SwigPyObject *sobj = (SwigPyObject *)v;
+ sobj->own = SWIG_POINTER_OWN;
+ return SWIG_Py_Void();
+}
+
+SWIGINTERN PyObject*
+SwigPyObject_own(PyObject *v, PyObject *args)
+{
+ PyObject *val = 0;
+#if (PY_VERSION_HEX < 0x02020000)
+ if (!PyArg_ParseTuple(args,(char *)"|O:own",&val))
+#elif (PY_VERSION_HEX < 0x02050000)
+ if (!PyArg_UnpackTuple(args, (char *)"own", 0, 1, &val))
+#else
+ if (!PyArg_UnpackTuple(args, "own", 0, 1, &val))
+#endif
+ {
+ return NULL;
+ }
+ else
+ {
+ SwigPyObject *sobj = (SwigPyObject *)v;
+ PyObject *obj = PyBool_FromLong(sobj->own);
+ if (val) {
+#ifdef METH_NOARGS
+ if (PyObject_IsTrue(val)) {
+ SwigPyObject_acquire(v);
+ } else {
+ SwigPyObject_disown(v);
+ }
+#else
+ if (PyObject_IsTrue(val)) {
+ SwigPyObject_acquire(v,args);
+ } else {
+ SwigPyObject_disown(v,args);
+ }
+#endif
+ }
+ return obj;
+ }
+}
+
+#ifdef METH_O
+static PyMethodDef
+swigobject_methods[] = {
+ {(char *)"disown", (PyCFunction)SwigPyObject_disown, METH_NOARGS, (char *)"releases ownership of the pointer"},
+ {(char *)"acquire", (PyCFunction)SwigPyObject_acquire, METH_NOARGS, (char *)"aquires ownership of the pointer"},
+ {(char *)"own", (PyCFunction)SwigPyObject_own, METH_VARARGS, (char *)"returns/sets ownership of the pointer"},
+ {(char *)"append", (PyCFunction)SwigPyObject_append, METH_O, (char *)"appends another 'this' object"},
+ {(char *)"next", (PyCFunction)SwigPyObject_next, METH_NOARGS, (char *)"returns the next 'this' object"},
+ {(char *)"__repr__",(PyCFunction)SwigPyObject_repr, METH_NOARGS, (char *)"returns object representation"},
+ {0, 0, 0, 0}
+};
+#else
+static PyMethodDef
+swigobject_methods[] = {
+ {(char *)"disown", (PyCFunction)SwigPyObject_disown, METH_VARARGS, (char *)"releases ownership of the pointer"},
+ {(char *)"acquire", (PyCFunction)SwigPyObject_acquire, METH_VARARGS, (char *)"aquires ownership of the pointer"},
+ {(char *)"own", (PyCFunction)SwigPyObject_own, METH_VARARGS, (char *)"returns/sets ownership of the pointer"},
+ {(char *)"append", (PyCFunction)SwigPyObject_append, METH_VARARGS, (char *)"appends another 'this' object"},
+ {(char *)"next", (PyCFunction)SwigPyObject_next, METH_VARARGS, (char *)"returns the next 'this' object"},
+ {(char *)"__repr__",(PyCFunction)SwigPyObject_repr, METH_VARARGS, (char *)"returns object representation"},
+ {0, 0, 0, 0}
+};
+#endif
+
+#if PY_VERSION_HEX < 0x02020000
+SWIGINTERN PyObject *
+SwigPyObject_getattr(SwigPyObject *sobj,char *name)
+{
+ return Py_FindMethod(swigobject_methods, (PyObject *)sobj, name);
+}
+#endif
+
+SWIGRUNTIME PyTypeObject*
+SwigPyObject_TypeOnce(void) {
+ static char swigobject_doc[] = "Swig object carries a C/C++ instance pointer";
+
+ static PyNumberMethods SwigPyObject_as_number = {
+ (binaryfunc)0, /*nb_add*/
+ (binaryfunc)0, /*nb_subtract*/
+ (binaryfunc)0, /*nb_multiply*/
+ /* nb_divide removed in Python 3 */
+#if PY_VERSION_HEX < 0x03000000
+ (binaryfunc)0, /*nb_divide*/
+#endif
+ (binaryfunc)0, /*nb_remainder*/
+ (binaryfunc)0, /*nb_divmod*/
+ (ternaryfunc)0,/*nb_power*/
+ (unaryfunc)0, /*nb_negative*/
+ (unaryfunc)0, /*nb_positive*/
+ (unaryfunc)0, /*nb_absolute*/
+ (inquiry)0, /*nb_nonzero*/
+ 0, /*nb_invert*/
+ 0, /*nb_lshift*/
+ 0, /*nb_rshift*/
+ 0, /*nb_and*/
+ 0, /*nb_xor*/
+ 0, /*nb_or*/
+#if PY_VERSION_HEX < 0x03000000
+ 0, /*nb_coerce*/
+#endif
+ (unaryfunc)SwigPyObject_long, /*nb_int*/
+#if PY_VERSION_HEX < 0x03000000
+ (unaryfunc)SwigPyObject_long, /*nb_long*/
+#else
+ 0, /*nb_reserved*/
+#endif
+ (unaryfunc)0, /*nb_float*/
+#if PY_VERSION_HEX < 0x03000000
+ (unaryfunc)SwigPyObject_oct, /*nb_oct*/
+ (unaryfunc)SwigPyObject_hex, /*nb_hex*/
+#endif
+#if PY_VERSION_HEX >= 0x03000000 /* 3.0 */
+ 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_index, nb_inplace_divide removed */
+#elif PY_VERSION_HEX >= 0x02050000 /* 2.5.0 */
+ 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_index */
+#elif PY_VERSION_HEX >= 0x02020000 /* 2.2.0 */
+ 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_inplace_true_divide */
+#elif PY_VERSION_HEX >= 0x02000000 /* 2.0.0 */
+ 0,0,0,0,0,0,0,0,0,0,0 /* nb_inplace_add -> nb_inplace_or */
+#endif
+ };
+
+ static PyTypeObject swigpyobject_type;
+ static int type_init = 0;
+ if (!type_init) {
+ const PyTypeObject tmp = {
+ /* PyObject header changed in Python 3 */
+#if PY_VERSION_HEX >= 0x03000000
+ PyVarObject_HEAD_INIT(NULL, 0)
+#else
+ PyObject_HEAD_INIT(NULL)
+ 0, /* ob_size */
+#endif
+ (char *)"SwigPyObject", /* tp_name */
+ sizeof(SwigPyObject), /* tp_basicsize */
+ 0, /* tp_itemsize */
+ (destructor)SwigPyObject_dealloc, /* tp_dealloc */
+ (printfunc)SwigPyObject_print, /* tp_print */
+#if PY_VERSION_HEX < 0x02020000
+ (getattrfunc)SwigPyObject_getattr, /* tp_getattr */
+#else
+ (getattrfunc)0, /* tp_getattr */
+#endif
+ (setattrfunc)0, /* tp_setattr */
+#if PY_VERSION_HEX >= 0x03000000
+ 0, /* tp_reserved in 3.0.1, tp_compare in 3.0.0 but not used */
+#else
+ (cmpfunc)SwigPyObject_compare, /* tp_compare */
+#endif
+ (reprfunc)SwigPyObject_repr, /* tp_repr */
+ &SwigPyObject_as_number, /* tp_as_number */
+ 0, /* tp_as_sequence */
+ 0, /* tp_as_mapping */
+ (hashfunc)0, /* tp_hash */
+ (ternaryfunc)0, /* tp_call */
+ (reprfunc)SwigPyObject_str, /* tp_str */
+ PyObject_GenericGetAttr, /* tp_getattro */
+ 0, /* tp_setattro */
+ 0, /* tp_as_buffer */
+ Py_TPFLAGS_DEFAULT, /* tp_flags */
+ swigobject_doc, /* tp_doc */
+ 0, /* tp_traverse */
+ 0, /* tp_clear */
+ (richcmpfunc)SwigPyObject_richcompare,/* tp_richcompare */
+ 0, /* tp_weaklistoffset */
+#if PY_VERSION_HEX >= 0x02020000
+ 0, /* tp_iter */
+ 0, /* tp_iternext */
+ swigobject_methods, /* tp_methods */
+ 0, /* tp_members */
+ 0, /* tp_getset */
+ 0, /* tp_base */
+ 0, /* tp_dict */
+ 0, /* tp_descr_get */
+ 0, /* tp_descr_set */
+ 0, /* tp_dictoffset */
+ 0, /* tp_init */
+ 0, /* tp_alloc */
+ 0, /* tp_new */
+ 0, /* tp_free */
+ 0, /* tp_is_gc */
+ 0, /* tp_bases */
+ 0, /* tp_mro */
+ 0, /* tp_cache */
+ 0, /* tp_subclasses */
+ 0, /* tp_weaklist */
+#endif
+#if PY_VERSION_HEX >= 0x02030000
+ 0, /* tp_del */
+#endif
+#if PY_VERSION_HEX >= 0x02060000
+ 0, /* tp_version */
+#endif
+#ifdef COUNT_ALLOCS
+ 0,0,0,0 /* tp_alloc -> tp_next */
+#endif
+ };
+ swigpyobject_type = tmp;
+ type_init = 1;
+#if PY_VERSION_HEX < 0x02020000
+ swigpyobject_type.ob_type = &PyType_Type;
+#else
+ if (PyType_Ready(&swigpyobject_type) < 0)
+ return NULL;
+#endif
+ }
+ return &swigpyobject_type;
+}
+
+SWIGRUNTIME PyObject *
+SwigPyObject_New(void *ptr, swig_type_info *ty, int own)
+{
+ SwigPyObject *sobj = PyObject_NEW(SwigPyObject, SwigPyObject_type());
+ if (sobj) {
+ sobj->ptr = ptr;
+ sobj->ty = ty;
+ sobj->own = own;
+ sobj->next = 0;
+ }
+ return (PyObject *)sobj;
+}
+
+/* -----------------------------------------------------------------------------
+ * Implements a simple Swig Packed type, and use it instead of string
+ * ----------------------------------------------------------------------------- */
+
+typedef struct {
+ PyObject_HEAD
+ void *pack;
+ swig_type_info *ty;
+ size_t size;
+} SwigPyPacked;
+
+SWIGRUNTIME int
+SwigPyPacked_print(SwigPyPacked *v, FILE *fp, int SWIGUNUSEDPARM(flags))
+{
+ char result[SWIG_BUFFER_SIZE];
+ fputs("<Swig Packed ", fp);
+ if (SWIG_PackDataName(result, v->pack, v->size, 0, sizeof(result))) {
+ fputs("at ", fp);
+ fputs(result, fp);
+ }
+ fputs(v->ty->name,fp);
+ fputs(">", fp);
+ return 0;
+}
+
+SWIGRUNTIME PyObject *
+SwigPyPacked_repr(SwigPyPacked *v)
+{
+ char result[SWIG_BUFFER_SIZE];
+ if (SWIG_PackDataName(result, v->pack, v->size, 0, sizeof(result))) {
+ return SWIG_Python_str_FromFormat("<Swig Packed at %s%s>", result, v->ty->name);
+ } else {
+ return SWIG_Python_str_FromFormat("<Swig Packed %s>", v->ty->name);
+ }
+}
+
+SWIGRUNTIME PyObject *
+SwigPyPacked_str(SwigPyPacked *v)
+{
+ char result[SWIG_BUFFER_SIZE];
+ if (SWIG_PackDataName(result, v->pack, v->size, 0, sizeof(result))){
+ return SWIG_Python_str_FromFormat("%s%s", result, v->ty->name);
+ } else {
+ return SWIG_Python_str_FromChar(v->ty->name);
+ }
+}
+
+SWIGRUNTIME int
+SwigPyPacked_compare(SwigPyPacked *v, SwigPyPacked *w)
+{
+ size_t i = v->size;
+ size_t j = w->size;
+ int s = (i < j) ? -1 : ((i > j) ? 1 : 0);
+ return s ? s : strncmp((char *)v->pack, (char *)w->pack, 2*v->size);
+}
+
+SWIGRUNTIME PyTypeObject* SwigPyPacked_TypeOnce(void);
+
+SWIGRUNTIME PyTypeObject*
+SwigPyPacked_type(void) {
+ static PyTypeObject *SWIG_STATIC_POINTER(type) = SwigPyPacked_TypeOnce();
+ return type;
+}
+
+SWIGRUNTIMEINLINE int
+SwigPyPacked_Check(PyObject *op) {
+ return ((op)->ob_type == SwigPyPacked_TypeOnce())
+ || (strcmp((op)->ob_type->tp_name,"SwigPyPacked") == 0);
+}
+
+SWIGRUNTIME void
+SwigPyPacked_dealloc(PyObject *v)
+{
+ if (SwigPyPacked_Check(v)) {
+ SwigPyPacked *sobj = (SwigPyPacked *) v;
+ free(sobj->pack);
+ }
+ PyObject_DEL(v);
+}
+
+SWIGRUNTIME PyTypeObject*
+SwigPyPacked_TypeOnce(void) {
+ static char swigpacked_doc[] = "Swig object carries a C/C++ instance pointer";
+ static PyTypeObject swigpypacked_type;
+ static int type_init = 0;
+ if (!type_init) {
+ const PyTypeObject tmp = {
+ /* PyObject header changed in Python 3 */
+#if PY_VERSION_HEX>=0x03000000
+ PyVarObject_HEAD_INIT(NULL, 0)
+#else
+ PyObject_HEAD_INIT(NULL)
+ 0, /* ob_size */
+#endif
+ (char *)"SwigPyPacked", /* tp_name */
+ sizeof(SwigPyPacked), /* tp_basicsize */
+ 0, /* tp_itemsize */
+ (destructor)SwigPyPacked_dealloc, /* tp_dealloc */
+ (printfunc)SwigPyPacked_print, /* tp_print */
+ (getattrfunc)0, /* tp_getattr */
+ (setattrfunc)0, /* tp_setattr */
+#if PY_VERSION_HEX>=0x03000000
+ 0, /* tp_reserved in 3.0.1 */
+#else
+ (cmpfunc)SwigPyPacked_compare, /* tp_compare */
+#endif
+ (reprfunc)SwigPyPacked_repr, /* tp_repr */
+ 0, /* tp_as_number */
+ 0, /* tp_as_sequence */
+ 0, /* tp_as_mapping */
+ (hashfunc)0, /* tp_hash */
+ (ternaryfunc)0, /* tp_call */
+ (reprfunc)SwigPyPacked_str, /* tp_str */
+ PyObject_GenericGetAttr, /* tp_getattro */
+ 0, /* tp_setattro */
+ 0, /* tp_as_buffer */
+ Py_TPFLAGS_DEFAULT, /* tp_flags */
+ swigpacked_doc, /* tp_doc */
+ 0, /* tp_traverse */
+ 0, /* tp_clear */
+ 0, /* tp_richcompare */
+ 0, /* tp_weaklistoffset */
+#if PY_VERSION_HEX >= 0x02020000
+ 0, /* tp_iter */
+ 0, /* tp_iternext */
+ 0, /* tp_methods */
+ 0, /* tp_members */
+ 0, /* tp_getset */
+ 0, /* tp_base */
+ 0, /* tp_dict */
+ 0, /* tp_descr_get */
+ 0, /* tp_descr_set */
+ 0, /* tp_dictoffset */
+ 0, /* tp_init */
+ 0, /* tp_alloc */
+ 0, /* tp_new */
+ 0, /* tp_free */
+ 0, /* tp_is_gc */
+ 0, /* tp_bases */
+ 0, /* tp_mro */
+ 0, /* tp_cache */
+ 0, /* tp_subclasses */
+ 0, /* tp_weaklist */
+#endif
+#if PY_VERSION_HEX >= 0x02030000
+ 0, /* tp_del */
+#endif
+#if PY_VERSION_HEX >= 0x02060000
+ 0, /* tp_version */
+#endif
+#ifdef COUNT_ALLOCS
+ 0,0,0,0 /* tp_alloc -> tp_next */
+#endif
+ };
+ swigpypacked_type = tmp;
+ type_init = 1;
+#if PY_VERSION_HEX < 0x02020000
+ swigpypacked_type.ob_type = &PyType_Type;
+#else
+ if (PyType_Ready(&swigpypacked_type) < 0)
+ return NULL;
+#endif
+ }
+ return &swigpypacked_type;
+}
+
+SWIGRUNTIME PyObject *
+SwigPyPacked_New(void *ptr, size_t size, swig_type_info *ty)
+{
+ SwigPyPacked *sobj = PyObject_NEW(SwigPyPacked, SwigPyPacked_type());
+ if (sobj) {
+ void *pack = malloc(size);
+ if (pack) {
+ memcpy(pack, ptr, size);
+ sobj->pack = pack;
+ sobj->ty = ty;
+ sobj->size = size;
+ } else {
+ PyObject_DEL((PyObject *) sobj);
+ sobj = 0;
+ }
+ }
+ return (PyObject *) sobj;
+}
+
+SWIGRUNTIME swig_type_info *
+SwigPyPacked_UnpackData(PyObject *obj, void *ptr, size_t size)
+{
+ if (SwigPyPacked_Check(obj)) {
+ SwigPyPacked *sobj = (SwigPyPacked *)obj;
+ if (sobj->size != size) return 0;
+ memcpy(ptr, sobj->pack, size);
+ return sobj->ty;
+ } else {
+ return 0;
+ }
+}
+
+/* -----------------------------------------------------------------------------
+ * pointers/data manipulation
+ * ----------------------------------------------------------------------------- */
+
+SWIGRUNTIMEINLINE PyObject *
+_SWIG_This(void)
+{
+ return SWIG_Python_str_FromChar("this");
+}
+
+static PyObject *swig_this = NULL;
+
+SWIGRUNTIME PyObject *
+SWIG_This(void)
+{
+ if (swig_this == NULL)
+ swig_this = _SWIG_This();
+ return swig_this;
+}
+
+/* #define SWIG_PYTHON_SLOW_GETSET_THIS */
+
+/* TODO: I don't know how to implement the fast getset in Python 3 right now */
+#if PY_VERSION_HEX>=0x03000000
+#define SWIG_PYTHON_SLOW_GETSET_THIS
+#endif
+
+SWIGRUNTIME SwigPyObject *
+SWIG_Python_GetSwigThis(PyObject *pyobj)
+{
+ PyObject *obj;
+
+ if (SwigPyObject_Check(pyobj))
+ return (SwigPyObject *) pyobj;
+
+#ifdef SWIGPYTHON_BUILTIN
+ (void)obj;
+# ifdef PyWeakref_CheckProxy
+ if (PyWeakref_CheckProxy(pyobj)) {
+ pyobj = PyWeakref_GET_OBJECT(pyobj);
+ if (pyobj && SwigPyObject_Check(pyobj))
+ return (SwigPyObject*) pyobj;
+ }
+# endif
+ return NULL;
+#else
+
+ obj = 0;
+
+#if (!defined(SWIG_PYTHON_SLOW_GETSET_THIS) && (PY_VERSION_HEX >= 0x02030000))
+ if (PyInstance_Check(pyobj)) {
+ obj = _PyInstance_Lookup(pyobj, SWIG_This());
+ } else {
+ PyObject **dictptr = _PyObject_GetDictPtr(pyobj);
+ if (dictptr != NULL) {
+ PyObject *dict = *dictptr;
+ obj = dict ? PyDict_GetItem(dict, SWIG_This()) : 0;
+ } else {
+#ifdef PyWeakref_CheckProxy
+ if (PyWeakref_CheckProxy(pyobj)) {
+ PyObject *wobj = PyWeakref_GET_OBJECT(pyobj);
+ return wobj ? SWIG_Python_GetSwigThis(wobj) : 0;
+ }
+#endif
+ obj = PyObject_GetAttr(pyobj,SWIG_This());
+ if (obj) {
+ Py_DECREF(obj);
+ } else {
+ if (PyErr_Occurred()) PyErr_Clear();
+ return 0;
+ }
+ }
+ }
+#else
+ obj = PyObject_GetAttr(pyobj,SWIG_This());
+ if (obj) {
+ Py_DECREF(obj);
+ } else {
+ if (PyErr_Occurred()) PyErr_Clear();
+ return 0;
+ }
+#endif
+ if (obj && !SwigPyObject_Check(obj)) {
+ /* a PyObject is called 'this', try to get the 'real this'
+ SwigPyObject from it */
+ return SWIG_Python_GetSwigThis(obj);
+ }
+ return (SwigPyObject *)obj;
+#endif
+}
+
+/* Acquire a pointer value */
+
+SWIGRUNTIME int
+SWIG_Python_AcquirePtr(PyObject *obj, int own) {
+ if (own == SWIG_POINTER_OWN) {
+ SwigPyObject *sobj = SWIG_Python_GetSwigThis(obj);
+ if (sobj) {
+ int oldown = sobj->own;
+ sobj->own = own;
+ return oldown;
+ }
+ }
+ return 0;
+}
+
+/* Convert a pointer value */
+
+SWIGRUNTIME int
+SWIG_Python_ConvertPtrAndOwn(PyObject *obj, void **ptr, swig_type_info *ty, int flags, int *own) {
+ int res;
+ SwigPyObject *sobj;
+
+ if (!obj)
+ return SWIG_ERROR;
+ if (obj == Py_None) {
+ if (ptr)
+ *ptr = 0;
+ return SWIG_OK;
+ }
+
+ res = SWIG_ERROR;
+
+ sobj = SWIG_Python_GetSwigThis(obj);
+ if (own)
+ *own = 0;
+ while (sobj) {
+ void *vptr = sobj->ptr;
+ if (ty) {
+ swig_type_info *to = sobj->ty;
+ if (to == ty) {
+ /* no type cast needed */
+ if (ptr) *ptr = vptr;
+ break;
+ } else {
+ swig_cast_info *tc = SWIG_TypeCheck(to->name,ty);
+ if (!tc) {
+ sobj = (SwigPyObject *)sobj->next;
+ } else {
+ if (ptr) {
+ int newmemory = 0;
+ *ptr = SWIG_TypeCast(tc,vptr,&newmemory);
+ if (newmemory == SWIG_CAST_NEW_MEMORY) {
+ assert(own); /* badly formed typemap which will lead to a memory leak - it must set and use own to delete *ptr */
+ if (own)
+ *own = *own | SWIG_CAST_NEW_MEMORY;
+ }
+ }
+ break;
+ }
+ }
+ } else {
+ if (ptr) *ptr = vptr;
+ break;
+ }
+ }
+ if (sobj) {
+ if (own)
+ *own = *own | sobj->own;
+ if (flags & SWIG_POINTER_DISOWN) {
+ sobj->own = 0;
+ }
+ res = SWIG_OK;
+ } else {
+ if (flags & SWIG_POINTER_IMPLICIT_CONV) {
+ SwigPyClientData *data = ty ? (SwigPyClientData *) ty->clientdata : 0;
+ if (data && !data->implicitconv) {
+ PyObject *klass = data->klass;
+ if (klass) {
+ PyObject *impconv;
+ data->implicitconv = 1; /* avoid recursion and call 'explicit' constructors*/
+ impconv = SWIG_Python_CallFunctor(klass, obj);
+ data->implicitconv = 0;
+ if (PyErr_Occurred()) {
+ PyErr_Clear();
+ impconv = 0;
+ }
+ if (impconv) {
+ SwigPyObject *iobj = SWIG_Python_GetSwigThis(impconv);
+ if (iobj) {
+ void *vptr;
+ res = SWIG_Python_ConvertPtrAndOwn((PyObject*)iobj, &vptr, ty, 0, 0);
+ if (SWIG_IsOK(res)) {
+ if (ptr) {
+ *ptr = vptr;
+ /* transfer the ownership to 'ptr' */
+ iobj->own = 0;
+ res = SWIG_AddCast(res);
+ res = SWIG_AddNewMask(res);
+ } else {
+ res = SWIG_AddCast(res);
+ }
+ }
+ }
+ Py_DECREF(impconv);
+ }
+ }
+ }
+ }
+ }
+ return res;
+}
+
+/* Convert a function ptr value */
+
+SWIGRUNTIME int
+SWIG_Python_ConvertFunctionPtr(PyObject *obj, void **ptr, swig_type_info *ty) {
+ if (!PyCFunction_Check(obj)) {
+ return SWIG_ConvertPtr(obj, ptr, ty, 0);
+ } else {
+ void *vptr = 0;
+
+ /* here we get the method pointer for callbacks */
+ const char *doc = (((PyCFunctionObject *)obj) -> m_ml -> ml_doc);
+ const char *desc = doc ? strstr(doc, "swig_ptr: ") : 0;
+ if (desc)
+ desc = ty ? SWIG_UnpackVoidPtr(desc + 10, &vptr, ty->name) : 0;
+ if (!desc)
+ return SWIG_ERROR;
+ if (ty) {
+ swig_cast_info *tc = SWIG_TypeCheck(desc,ty);
+ if (tc) {
+ int newmemory = 0;
+ *ptr = SWIG_TypeCast(tc,vptr,&newmemory);
+ assert(!newmemory); /* newmemory handling not yet implemented */
+ } else {
+ return SWIG_ERROR;
+ }
+ } else {
+ *ptr = vptr;
+ }
+ return SWIG_OK;
+ }
+}
+
+/* Convert a packed value value */
+
+SWIGRUNTIME int
+SWIG_Python_ConvertPacked(PyObject *obj, void *ptr, size_t sz, swig_type_info *ty) {
+ swig_type_info *to = SwigPyPacked_UnpackData(obj, ptr, sz);
+ if (!to) return SWIG_ERROR;
+ if (ty) {
+ if (to != ty) {
+ /* check type cast? */
+ swig_cast_info *tc = SWIG_TypeCheck(to->name,ty);
+ if (!tc) return SWIG_ERROR;
+ }
+ }
+ return SWIG_OK;
+}
+
+/* -----------------------------------------------------------------------------
+ * Create a new pointer object
+ * ----------------------------------------------------------------------------- */
+
+/*
+ Create a new instance object, without calling __init__, and set the
+ 'this' attribute.
+*/
+
+SWIGRUNTIME PyObject*
+SWIG_Python_NewShadowInstance(SwigPyClientData *data, PyObject *swig_this)
+{
+#if (PY_VERSION_HEX >= 0x02020000)
+ PyObject *inst = 0;
+ PyObject *newraw = data->newraw;
+ if (newraw) {
+ inst = PyObject_Call(newraw, data->newargs, NULL);
+ if (inst) {
+#if !defined(SWIG_PYTHON_SLOW_GETSET_THIS)
+ PyObject **dictptr = _PyObject_GetDictPtr(inst);
+ if (dictptr != NULL) {
+ PyObject *dict = *dictptr;
+ if (dict == NULL) {
+ dict = PyDict_New();
+ *dictptr = dict;
+ PyDict_SetItem(dict, SWIG_This(), swig_this);
+ }
+ }
+#else
+ PyObject *key = SWIG_This();
+ PyObject_SetAttr(inst, key, swig_this);
+#endif
+ }
+ } else {
+#if PY_VERSION_HEX >= 0x03000000
+ inst = PyBaseObject_Type.tp_new((PyTypeObject*) data->newargs, Py_None, Py_None);
+ if (inst) {
+ PyObject_SetAttr(inst, SWIG_This(), swig_this);
+ Py_TYPE(inst)->tp_flags &= ~Py_TPFLAGS_VALID_VERSION_TAG;
+ }
+#else
+ PyObject *dict = PyDict_New();
+ if (dict) {
+ PyDict_SetItem(dict, SWIG_This(), swig_this);
+ inst = PyInstance_NewRaw(data->newargs, dict);
+ Py_DECREF(dict);
+ }
+#endif
+ }
+ return inst;
+#else
+#if (PY_VERSION_HEX >= 0x02010000)
+ PyObject *inst = 0;
+ PyObject *dict = PyDict_New();
+ if (dict) {
+ PyDict_SetItem(dict, SWIG_This(), swig_this);
+ inst = PyInstance_NewRaw(data->newargs, dict);
+ Py_DECREF(dict);
+ }
+ return (PyObject *) inst;
+#else
+ PyInstanceObject *inst = PyObject_NEW(PyInstanceObject, &PyInstance_Type);
+ if (inst == NULL) {
+ return NULL;
+ }
+ inst->in_class = (PyClassObject *)data->newargs;
+ Py_INCREF(inst->in_class);
+ inst->in_dict = PyDict_New();
+ if (inst->in_dict == NULL) {
+ Py_DECREF(inst);
+ return NULL;
+ }
+#ifdef Py_TPFLAGS_HAVE_WEAKREFS
+ inst->in_weakreflist = NULL;
+#endif
+#ifdef Py_TPFLAGS_GC
+ PyObject_GC_Init(inst);
+#endif
+ PyDict_SetItem(inst->in_dict, SWIG_This(), swig_this);
+ return (PyObject *) inst;
+#endif
+#endif
+}
+
+SWIGRUNTIME void
+SWIG_Python_SetSwigThis(PyObject *inst, PyObject *swig_this)
+{
+ PyObject *dict;
+#if (PY_VERSION_HEX >= 0x02020000) && !defined(SWIG_PYTHON_SLOW_GETSET_THIS)
+ PyObject **dictptr = _PyObject_GetDictPtr(inst);
+ if (dictptr != NULL) {
+ dict = *dictptr;
+ if (dict == NULL) {
+ dict = PyDict_New();
+ *dictptr = dict;
+ }
+ PyDict_SetItem(dict, SWIG_This(), swig_this);
+ return;
+ }
+#endif
+ dict = PyObject_GetAttrString(inst, (char*)"__dict__");
+ PyDict_SetItem(dict, SWIG_This(), swig_this);
+ Py_DECREF(dict);
+}
+
+
+SWIGINTERN PyObject *
+SWIG_Python_InitShadowInstance(PyObject *args) {
+ PyObject *obj[2];
+ if (!SWIG_Python_UnpackTuple(args, "swiginit", 2, 2, obj)) {
+ return NULL;
+ } else {
+ SwigPyObject *sthis = SWIG_Python_GetSwigThis(obj[0]);
+ if (sthis) {
+ SwigPyObject_append((PyObject*) sthis, obj[1]);
+ } else {
+ SWIG_Python_SetSwigThis(obj[0], obj[1]);
+ }
+ return SWIG_Py_Void();
+ }
+}
+
+/* Create a new pointer object */
+
+SWIGRUNTIME PyObject *
+SWIG_Python_NewPointerObj(PyObject *self, void *ptr, swig_type_info *type, int flags) {
+ SwigPyClientData *clientdata;
+ PyObject * robj;
+ int own;
+
+ if (!ptr)
+ return SWIG_Py_Void();
+
+ clientdata = type ? (SwigPyClientData *)(type->clientdata) : 0;
+ own = (flags & SWIG_POINTER_OWN) ? SWIG_POINTER_OWN : 0;
+ if (clientdata && clientdata->pytype) {
+ SwigPyObject *newobj;
+ if (flags & SWIG_BUILTIN_TP_INIT) {
+ newobj = (SwigPyObject*) self;
+ if (newobj->ptr) {
+ PyObject *next_self = clientdata->pytype->tp_alloc(clientdata->pytype, 0);
+ while (newobj->next)
+ newobj = (SwigPyObject *) newobj->next;
+ newobj->next = next_self;
+ newobj = (SwigPyObject *)next_self;
+ }
+ } else {
+ newobj = PyObject_New(SwigPyObject, clientdata->pytype);
+ }
+ if (newobj) {
+ newobj->ptr = ptr;
+ newobj->ty = type;
+ newobj->own = own;
+ newobj->next = 0;
+#ifdef SWIGPYTHON_BUILTIN
+ newobj->dict = 0;
+#endif
+ return (PyObject*) newobj;
+ }
+ return SWIG_Py_Void();
+ }
+
+ assert(!(flags & SWIG_BUILTIN_TP_INIT));
+
+ robj = SwigPyObject_New(ptr, type, own);
+ if (robj && clientdata && !(flags & SWIG_POINTER_NOSHADOW)) {
+ PyObject *inst = SWIG_Python_NewShadowInstance(clientdata, robj);
+ Py_DECREF(robj);
+ robj = inst;
+ }
+ return robj;
+}
+
+/* Create a new packed object */
+
+SWIGRUNTIMEINLINE PyObject *
+SWIG_Python_NewPackedObj(void *ptr, size_t sz, swig_type_info *type) {
+ return ptr ? SwigPyPacked_New((void *) ptr, sz, type) : SWIG_Py_Void();
+}
+
+/* -----------------------------------------------------------------------------*
+ * Get type list
+ * -----------------------------------------------------------------------------*/
+
+#ifdef SWIG_LINK_RUNTIME
+void *SWIG_ReturnGlobalTypeList(void *);
+#endif
+
+SWIGRUNTIME swig_module_info *
+SWIG_Python_GetModule(void) {
+ static void *type_pointer = (void *)0;
+ /* first check if module already created */
+ if (!type_pointer) {
+#ifdef SWIG_LINK_RUNTIME
+ type_pointer = SWIG_ReturnGlobalTypeList((void *)0);
+#else
+# ifdef SWIGPY_USE_CAPSULE
+ type_pointer = PyCapsule_Import(SWIGPY_CAPSULE_NAME, 0);
+# else
+ type_pointer = PyCObject_Import((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION,
+ (char*)"type_pointer" SWIG_TYPE_TABLE_NAME);
+# endif
+ if (PyErr_Occurred()) {
+ PyErr_Clear();
+ type_pointer = (void *)0;
+ }
+#endif
+ }
+ return (swig_module_info *) type_pointer;
+}
+
+#if PY_MAJOR_VERSION < 2
+/* PyModule_AddObject function was introduced in Python 2.0. The following function
+ is copied out of Python/modsupport.c in python version 2.3.4 */
+SWIGINTERN int
+PyModule_AddObject(PyObject *m, char *name, PyObject *o)
+{
+ PyObject *dict;
+ if (!PyModule_Check(m)) {
+ PyErr_SetString(PyExc_TypeError,
+ "PyModule_AddObject() needs module as first arg");
+ return SWIG_ERROR;
+ }
+ if (!o) {
+ PyErr_SetString(PyExc_TypeError,
+ "PyModule_AddObject() needs non-NULL value");
+ return SWIG_ERROR;
+ }
+
+ dict = PyModule_GetDict(m);
+ if (dict == NULL) {
+ /* Internal error -- modules must have a dict! */
+ PyErr_Format(PyExc_SystemError, "module '%s' has no __dict__",
+ PyModule_GetName(m));
+ return SWIG_ERROR;
+ }
+ if (PyDict_SetItemString(dict, name, o))
+ return SWIG_ERROR;
+ Py_DECREF(o);
+ return SWIG_OK;
+}
+#endif
+
+SWIGRUNTIME void
+#ifdef SWIGPY_USE_CAPSULE
+SWIG_Python_DestroyModule(PyObject *obj)
+#else
+SWIG_Python_DestroyModule(void *vptr)
+#endif
+{
+#ifdef SWIGPY_USE_CAPSULE
+ swig_module_info *swig_module = (swig_module_info *) PyCapsule_GetPointer(obj, SWIGPY_CAPSULE_NAME);
+#else
+ swig_module_info *swig_module = (swig_module_info *) vptr;
+#endif
+ swig_type_info **types = swig_module->types;
+ size_t i;
+ for (i =0; i < swig_module->size; ++i) {
+ swig_type_info *ty = types[i];
+ if (ty->owndata) {
+ SwigPyClientData *data = (SwigPyClientData *) ty->clientdata;
+ if (data) SwigPyClientData_Del(data);
+ }
+ }
+ Py_DECREF(SWIG_This());
+ swig_this = NULL;
+}
+
+SWIGRUNTIME void
+SWIG_Python_SetModule(swig_module_info *swig_module) {
+#if PY_VERSION_HEX >= 0x03000000
+ /* Add a dummy module object into sys.modules */
+ PyObject *module = PyImport_AddModule((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION);
+#else
+ static PyMethodDef swig_empty_runtime_method_table[] = { {NULL, NULL, 0, NULL} }; /* Sentinel */
+ PyObject *module = Py_InitModule((char*)"swig_runtime_data" SWIG_RUNTIME_VERSION, swig_empty_runtime_method_table);
+#endif
+#ifdef SWIGPY_USE_CAPSULE
+ PyObject *pointer = PyCapsule_New((void *) swig_module, SWIGPY_CAPSULE_NAME, SWIG_Python_DestroyModule);
+ if (pointer && module) {
+ PyModule_AddObject(module, (char*)"type_pointer_capsule" SWIG_TYPE_TABLE_NAME, pointer);
+ } else {
+ Py_XDECREF(pointer);
+ }
+#else
+ PyObject *pointer = PyCObject_FromVoidPtr((void *) swig_module, SWIG_Python_DestroyModule);
+ if (pointer && module) {
+ PyModule_AddObject(module, (char*)"type_pointer" SWIG_TYPE_TABLE_NAME, pointer);
+ } else {
+ Py_XDECREF(pointer);
+ }
+#endif
+}
+
+/* The python cached type query */
+SWIGRUNTIME PyObject *
+SWIG_Python_TypeCache(void) {
+ static PyObject *SWIG_STATIC_POINTER(cache) = PyDict_New();
+ return cache;
+}
+
+SWIGRUNTIME swig_type_info *
+SWIG_Python_TypeQuery(const char *type)
+{
+ PyObject *cache = SWIG_Python_TypeCache();
+ PyObject *key = SWIG_Python_str_FromChar(type);
+ PyObject *obj = PyDict_GetItem(cache, key);
+ swig_type_info *descriptor;
+ if (obj) {
+#ifdef SWIGPY_USE_CAPSULE
+ descriptor = (swig_type_info *) PyCapsule_GetPointer(obj, NULL);
+#else
+ descriptor = (swig_type_info *) PyCObject_AsVoidPtr(obj);
+#endif
+ } else {
+ swig_module_info *swig_module = SWIG_Python_GetModule();
+ descriptor = SWIG_TypeQueryModule(swig_module, swig_module, type);
+ if (descriptor) {
+#ifdef SWIGPY_USE_CAPSULE
+ obj = PyCapsule_New((void*) descriptor, NULL, NULL);
+#else
+ obj = PyCObject_FromVoidPtr(descriptor, NULL);
+#endif
+ PyDict_SetItem(cache, key, obj);
+ Py_DECREF(obj);
+ }
+ }
+ Py_DECREF(key);
+ return descriptor;
+}
+
+/*
+ For backward compatibility only
+*/
+#define SWIG_POINTER_EXCEPTION 0
+#define SWIG_arg_fail(arg) SWIG_Python_ArgFail(arg)
+#define SWIG_MustGetPtr(p, type, argnum, flags) SWIG_Python_MustGetPtr(p, type, argnum, flags)
+
+SWIGRUNTIME int
+SWIG_Python_AddErrMesg(const char* mesg, int infront)
+{
+ if (PyErr_Occurred()) {
+ PyObject *type = 0;
+ PyObject *value = 0;
+ PyObject *traceback = 0;
+ PyErr_Fetch(&type, &value, &traceback);
+ if (value) {
+ char *tmp;
+ PyObject *old_str = PyObject_Str(value);
+ Py_XINCREF(type);
+ PyErr_Clear();
+ if (infront) {
+ PyErr_Format(type, "%s %s", mesg, tmp = SWIG_Python_str_AsChar(old_str));
+ } else {
+ PyErr_Format(type, "%s %s", tmp = SWIG_Python_str_AsChar(old_str), mesg);
+ }
+ SWIG_Python_str_DelForPy3(tmp);
+ Py_DECREF(old_str);
+ }
+ return 1;
+ } else {
+ return 0;
+ }
+}
+
+SWIGRUNTIME int
+SWIG_Python_ArgFail(int argnum)
+{
+ if (PyErr_Occurred()) {
+ /* add information about failing argument */
+ char mesg[256];
+ PyOS_snprintf(mesg, sizeof(mesg), "argument number %d:", argnum);
+ return SWIG_Python_AddErrMesg(mesg, 1);
+ } else {
+ return 0;
+ }
+}
+
+SWIGRUNTIMEINLINE const char *
+SwigPyObject_GetDesc(PyObject *self)
+{
+ SwigPyObject *v = (SwigPyObject *)self;
+ swig_type_info *ty = v ? v->ty : 0;
+ return ty ? ty->str : "";
+}
+
+SWIGRUNTIME void
+SWIG_Python_TypeError(const char *type, PyObject *obj)
+{
+ if (type) {
+#if defined(SWIG_COBJECT_TYPES)
+ if (obj && SwigPyObject_Check(obj)) {
+ const char *otype = (const char *) SwigPyObject_GetDesc(obj);
+ if (otype) {
+ PyErr_Format(PyExc_TypeError, "a '%s' is expected, 'SwigPyObject(%s)' is received",
+ type, otype);
+ return;
+ }
+ } else
+#endif
+ {
+ const char *otype = (obj ? obj->ob_type->tp_name : 0);
+ if (otype) {
+ PyObject *str = PyObject_Str(obj);
+ const char *cstr = str ? SWIG_Python_str_AsChar(str) : 0;
+ if (cstr) {
+ PyErr_Format(PyExc_TypeError, "a '%s' is expected, '%s(%s)' is received",
+ type, otype, cstr);
+ SWIG_Python_str_DelForPy3(cstr);
+ } else {
+ PyErr_Format(PyExc_TypeError, "a '%s' is expected, '%s' is received",
+ type, otype);
+ }
+ Py_XDECREF(str);
+ return;
+ }
+ }
+ PyErr_Format(PyExc_TypeError, "a '%s' is expected", type);
+ } else {
+ PyErr_Format(PyExc_TypeError, "unexpected type is received");
+ }
+}
+
+
+/* Convert a pointer value, signal an exception on a type mismatch */
+SWIGRUNTIME void *
+SWIG_Python_MustGetPtr(PyObject *obj, swig_type_info *ty, int SWIGUNUSEDPARM(argnum), int flags) {
+ void *result;
+ if (SWIG_Python_ConvertPtr(obj, &result, ty, flags) == -1) {
+ PyErr_Clear();
+#if SWIG_POINTER_EXCEPTION
+ if (flags) {
+ SWIG_Python_TypeError(SWIG_TypePrettyName(ty), obj);
+ SWIG_Python_ArgFail(argnum);
+ }
+#endif
+ }
+ return result;
+}
+
+#ifdef SWIGPYTHON_BUILTIN
+SWIGRUNTIME int
+SWIG_Python_NonDynamicSetAttr(PyObject *obj, PyObject *name, PyObject *value) {
+ PyTypeObject *tp = obj->ob_type;
+ PyObject *descr;
+ PyObject *encoded_name;
+ descrsetfunc f;
+ int res;
+
+# ifdef Py_USING_UNICODE
+ if (PyString_Check(name)) {
+ name = PyUnicode_Decode(PyString_AsString(name), PyString_Size(name), NULL, NULL);
+ if (!name)
+ return -1;
+ } else if (!PyUnicode_Check(name))
+# else
+ if (!PyString_Check(name))
+# endif
+ {
+ PyErr_Format(PyExc_TypeError, "attribute name must be string, not '%.200s'", name->ob_type->tp_name);
+ return -1;
+ } else {
+ Py_INCREF(name);
+ }
+
+ if (!tp->tp_dict) {
+ if (PyType_Ready(tp) < 0)
+ goto done;
+ }
+
+ res = -1;
+ descr = _PyType_Lookup(tp, name);
+ f = NULL;
+ if (descr != NULL)
+ f = descr->ob_type->tp_descr_set;
+ if (!f) {
+ if (PyString_Check(name)) {
+ encoded_name = name;
+ Py_INCREF(name);
+ } else {
+ encoded_name = PyUnicode_AsUTF8String(name);
+ }
+ PyErr_Format(PyExc_AttributeError, "'%.100s' object has no attribute '%.200s'", tp->tp_name, PyString_AsString(encoded_name));
+ Py_DECREF(encoded_name);
+ } else {
+ res = f(descr, obj, value);
+ }
+
+ done:
+ Py_DECREF(name);
+ return res;
+}
+#endif
+
+
+#ifdef __cplusplus
+}
+#endif
+
+
+
+#define SWIG_exception_fail(code, msg) do { SWIG_Error(code, msg); SWIG_fail; } while(0)
+
+#define SWIG_contract_assert(expr, msg) if (!(expr)) { SWIG_Error(SWIG_RuntimeError, msg); SWIG_fail; } else
+
+
+
+/* -------- TYPES TABLE (BEGIN) -------- */
+
+#define SWIGTYPE_p_COORDINATE swig_types[0]
+#define SWIGTYPE_p_ConcEnt swig_types[1]
+#define SWIGTYPE_p_FILE swig_types[2]
+#define SWIGTYPE_p_SOLUTION swig_types[3]
+#define SWIGTYPE_p_Tree swig_types[4]
+#define SWIGTYPE_p_bondT swig_types[5]
+#define SWIGTYPE_p_char swig_types[6]
+#define SWIGTYPE_p_cofoldF swig_types[7]
+#define SWIGTYPE_p_cpair swig_types[8]
+#define SWIGTYPE_p_double swig_types[9]
+#define SWIGTYPE_p_doubleArray swig_types[10]
+#define SWIGTYPE_p_duplexT swig_types[11]
+#define SWIGTYPE_p_float swig_types[12]
+#define SWIGTYPE_p_floatArray swig_types[13]
+#define SWIGTYPE_p_int swig_types[14]
+#define SWIGTYPE_p_intArray swig_types[15]
+#define SWIGTYPE_p_model_detailsT swig_types[16]
+#define SWIGTYPE_p_p_char swig_types[17]
+#define SWIGTYPE_p_p_double swig_types[18]
+#define SWIGTYPE_p_p_doubleArray swig_types[19]
+#define SWIGTYPE_p_p_float swig_types[20]
+#define SWIGTYPE_p_p_floatArray swig_types[21]
+#define SWIGTYPE_p_p_int swig_types[22]
+#define SWIGTYPE_p_p_intArray swig_types[23]
+#define SWIGTYPE_p_p_p_char swig_types[24]
+#define SWIGTYPE_p_p_p_short swig_types[25]
+#define SWIGTYPE_p_p_p_unsigned_short swig_types[26]
+#define SWIGTYPE_p_p_paramT swig_types[27]
+#define SWIGTYPE_p_p_plist swig_types[28]
+#define SWIGTYPE_p_p_short swig_types[29]
+#define SWIGTYPE_p_p_void swig_types[30]
+#define SWIGTYPE_p_paramT swig_types[31]
+#define SWIGTYPE_p_path_t swig_types[32]
+#define SWIGTYPE_p_pf_paramT swig_types[33]
+#define SWIGTYPE_p_plist swig_types[34]
+#define SWIGTYPE_p_short swig_types[35]
+#define SWIGTYPE_p_swString swig_types[36]
+#define SWIGTYPE_p_unsigned_int swig_types[37]
+#define SWIGTYPE_p_unsigned_short swig_types[38]
+#define SWIGTYPE_p_void swig_types[39]
+static swig_type_info *swig_types[41];
+static swig_module_info swig_module = {swig_types, 40, 0, 0, 0, 0};
+#define SWIG_TypeQuery(name) SWIG_TypeQueryModule(&swig_module, &swig_module, name)
+#define SWIG_MangledTypeQuery(name) SWIG_MangledTypeQueryModule(&swig_module, &swig_module, name)
+
+/* -------- TYPES TABLE (END) -------- */
+
+#if (PY_VERSION_HEX <= 0x02000000)
+# if !defined(SWIG_PYTHON_CLASSIC)
+# error "This python version requires swig to be run with the '-classic' option"
+# endif
+#endif
+
+/*-----------------------------------------------
+ @(target):= _RNA.so
+ ------------------------------------------------*/
+#if PY_VERSION_HEX >= 0x03000000
+# define SWIG_init PyInit__RNA
+
+#else
+# define SWIG_init init_RNA
+
+#endif
+#define SWIG_name "_RNA"
+
+#define SWIGVERSION 0x020008
+#define SWIG_VERSION SWIGVERSION
+
+
+#define SWIG_as_voidptr(a) (void *)((const void *)(a))
+#define SWIG_as_voidptrptr(a) ((void)SWIG_as_voidptr(*a),(void**)(a))
+
+
+#include "../H/data_structures.h"
+#include "../H/utils.h"
+#include "../H/fold_vars.h"
+#undef fold
+#include "../H/fold.h"
+#include "../H/cofold.h"
+#include "../H/part_func.h"
+#include "../H/part_func_co.h"
+#include "../H/naview.h"
+#include "../H/plot_layouts.h"
+#include "../H/PS_dot.h"
+#include "../H/inverse.h"
+#include "../H/RNAstruct.h"
+#include "../H/treedist.h"
+#include "../H/stringdist.h"
+#include "../H/profiledist.h"
+#include "../H/dist_vars.h"
+#include "../H/pair_mat.h"
+#include "../H/subopt.h"
+#include "../H/energy_const.h"
+#include "../H/params.h"
+#include "../H/duplex.h"
+#include "../H/alifold.h"
+#include "../H/aln_util.h"
+#include "../H/findpath.h"
+#include "../H/Lfold.h"
+#include "../H/read_epars.h"
+
+
+
+ static int *new_intP(size_t nelements) {
+ return (int *)malloc((nelements)*sizeof(int));
+ }
+
+ static void delete_intP(int *ary) {
+ free((char*)ary);
+ }
+
+ static int intP_getitem(int *ary, size_t index) {
+ return ary[index];
+ }
+ static void intP_setitem(int *ary, size_t index, int value) {
+ ary[index] = value;
+ }
+
+
+SWIGINTERN int
+SWIG_AsVal_double (PyObject *obj, double *val)
+{
+ int res = SWIG_TypeError;
+ if (PyFloat_Check(obj)) {
+ if (val) *val = PyFloat_AsDouble(obj);
+ return SWIG_OK;
+ } else if (PyInt_Check(obj)) {
+ if (val) *val = PyInt_AsLong(obj);
+ return SWIG_OK;
+ } else if (PyLong_Check(obj)) {
+ double v = PyLong_AsDouble(obj);
+ if (!PyErr_Occurred()) {
+ if (val) *val = v;
+ return SWIG_OK;
+ } else {
+ PyErr_Clear();
+ }
+ }
+#ifdef SWIG_PYTHON_CAST_MODE
+ {
+ int dispatch = 0;
+ double d = PyFloat_AsDouble(obj);
+ if (!PyErr_Occurred()) {
+ if (val) *val = d;
+ return SWIG_AddCast(SWIG_OK);
+ } else {
+ PyErr_Clear();
+ }
+ if (!dispatch) {
+ long v = PyLong_AsLong(obj);
+ if (!PyErr_Occurred()) {
+ if (val) *val = v;
+ return SWIG_AddCast(SWIG_AddCast(SWIG_OK));
+ } else {
+ PyErr_Clear();
+ }
+ }
+ }
+#endif
+ return res;
+}
+
+
+#include <float.h>
+
+
+#include <math.h>
+
+
+SWIGINTERNINLINE int
+SWIG_CanCastAsInteger(double *d, double min, double max) {
+ double x = *d;
+ if ((min <= x && x <= max)) {
+ double fx = floor(x);
+ double cx = ceil(x);
+ double rd = ((x - fx) < 0.5) ? fx : cx; /* simple rint */
+ if ((errno == EDOM) || (errno == ERANGE)) {
+ errno = 0;
+ } else {
+ double summ, reps, diff;
+ if (rd < x) {
+ diff = x - rd;
+ } else if (rd > x) {
+ diff = rd - x;
+ } else {
+ return 1;
+ }
+ summ = rd + x;
+ reps = diff/summ;
+ if (reps < 8*DBL_EPSILON) {
+ *d = rd;
+ return 1;
+ }
+ }
+ }
+ return 0;
+}
+
+
+SWIGINTERN int
+SWIG_AsVal_unsigned_SS_long (PyObject *obj, unsigned long *val)
+{
+ if (PyInt_Check(obj)) {
+ long v = PyInt_AsLong(obj);
+ if (v >= 0) {
+ if (val) *val = v;
+ return SWIG_OK;
+ } else {
+ return SWIG_OverflowError;
+ }
+ } else if (PyLong_Check(obj)) {
+ unsigned long v = PyLong_AsUnsignedLong(obj);
+ if (!PyErr_Occurred()) {
+ if (val) *val = v;
+ return SWIG_OK;
+ } else {
+ PyErr_Clear();
+ }
+ }
+#ifdef SWIG_PYTHON_CAST_MODE
+ {
+ int dispatch = 0;
+ unsigned long v = PyLong_AsUnsignedLong(obj);
+ if (!PyErr_Occurred()) {
+ if (val) *val = v;
+ return SWIG_AddCast(SWIG_OK);
+ } else {
+ PyErr_Clear();
+ }
+ if (!dispatch) {
+ double d;
+ int res = SWIG_AddCast(SWIG_AsVal_double (obj,&d));
+ if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, 0, ULONG_MAX)) {
+ if (val) *val = (unsigned long)(d);
+ return res;
+ }
+ }
+ }
+#endif
+ return SWIG_TypeError;
+}
+
+
+SWIGINTERNINLINE int
+SWIG_AsVal_size_t (PyObject * obj, size_t *val)
+{
+ unsigned long v;
+ int res = SWIG_AsVal_unsigned_SS_long (obj, val ? &v : 0);
+ if (SWIG_IsOK(res) && val) *val = (size_t)(v);
+ return res;
+}
+
+
+SWIGINTERNINLINE PyObject*
+ SWIG_From_int (int value)
+{
+ return PyInt_FromLong((long) value);
+}
+
+
+#include <limits.h>
+#if !defined(SWIG_NO_LLONG_MAX)
+# if !defined(LLONG_MAX) && defined(__GNUC__) && defined (__LONG_LONG_MAX__)
+# define LLONG_MAX __LONG_LONG_MAX__
+# define LLONG_MIN (-LLONG_MAX - 1LL)
+# define ULLONG_MAX (LLONG_MAX * 2ULL + 1ULL)
+# endif
+#endif
+
+
+SWIGINTERN int
+SWIG_AsVal_long (PyObject *obj, long* val)
+{
+ if (PyInt_Check(obj)) {
+ if (val) *val = PyInt_AsLong(obj);
+ return SWIG_OK;
+ } else if (PyLong_Check(obj)) {
+ long v = PyLong_AsLong(obj);
+ if (!PyErr_Occurred()) {
+ if (val) *val = v;
+ return SWIG_OK;
+ } else {
+ PyErr_Clear();
+ }
+ }
+#ifdef SWIG_PYTHON_CAST_MODE
+ {
+ int dispatch = 0;
+ long v = PyInt_AsLong(obj);
+ if (!PyErr_Occurred()) {
+ if (val) *val = v;
+ return SWIG_AddCast(SWIG_OK);
+ } else {
+ PyErr_Clear();
+ }
+ if (!dispatch) {
+ double d;
+ int res = SWIG_AddCast(SWIG_AsVal_double (obj,&d));
+ if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, LONG_MIN, LONG_MAX)) {
+ if (val) *val = (long)(d);
+ return res;
+ }
+ }
+ }
+#endif
+ return SWIG_TypeError;
+}
+
+
+SWIGINTERN int
+SWIG_AsVal_int (PyObject * obj, int *val)
+{
+ long v;
+ int res = SWIG_AsVal_long (obj, &v);
+ if (SWIG_IsOK(res)) {
+ if ((v < INT_MIN || v > INT_MAX)) {
+ return SWIG_OverflowError;
+ } else {
+ if (val) *val = (int)(v);
+ }
+ }
+ return res;
+}
+
+
+typedef int intArray;
+
+SWIGINTERN intArray *new_intArray(size_t nelements){
+ return (int *)malloc((nelements)*sizeof(int));
+ }
+SWIGINTERN void delete_intArray(intArray *self){
+ free((char*)self);
+ }
+SWIGINTERN int intArray___getitem__(intArray *self,size_t index){
+ return self[index];
+ }
+SWIGINTERN void intArray___setitem__(intArray *self,size_t index,int value){
+ self[index] = value;
+ }
+SWIGINTERN int *intArray_cast(intArray *self){
+ return self;
+ }
+SWIGINTERN intArray *intArray_frompointer(int *t){
+ return (intArray *)(t);
+ }
+
+ static float *new_floatP(size_t nelements) {
+ return (float *)malloc((nelements)*sizeof(float));
+ }
+
+ static void delete_floatP(float *ary) {
+ free((char*)ary);
+ }
+
+ static float floatP_getitem(float *ary, size_t index) {
+ return ary[index];
+ }
+ static void floatP_setitem(float *ary, size_t index, float value) {
+ ary[index] = value;
+ }
+
+
+ #define SWIG_From_double PyFloat_FromDouble
+
+
+SWIGINTERNINLINE PyObject *
+SWIG_From_float (float value)
+{
+ return SWIG_From_double (value);
+}
+
+
+SWIGINTERN int
+SWIG_AsVal_float (PyObject * obj, float *val)
+{
+ double v;
+ int res = SWIG_AsVal_double (obj, &v);
+ if (SWIG_IsOK(res)) {
+ if ((v < -FLT_MAX || v > FLT_MAX)) {
+ return SWIG_OverflowError;
+ } else {
+ if (val) *val = (float)(v);
+ }
+ }
+ return res;
+}
+
+
+typedef float floatArray;
+
+SWIGINTERN floatArray *new_floatArray(size_t nelements){
+ return (float *)malloc((nelements)*sizeof(float));
+ }
+SWIGINTERN void delete_floatArray(floatArray *self){
+ free((char*)self);
+ }
+SWIGINTERN float floatArray___getitem__(floatArray *self,size_t index){
+ return self[index];
+ }
+SWIGINTERN void floatArray___setitem__(floatArray *self,size_t index,float value){
+ self[index] = value;
+ }
+SWIGINTERN float *floatArray_cast(floatArray *self){
+ return self;
+ }
+SWIGINTERN floatArray *floatArray_frompointer(float *t){
+ return (floatArray *)(t);
+ }
+
+ static double *new_doubleP(size_t nelements) {
+ return (double *)malloc((nelements)*sizeof(double));
+ }
+
+ static void delete_doubleP(double *ary) {
+ free((char*)ary);
+ }
+
+ static double doubleP_getitem(double *ary, size_t index) {
+ return ary[index];
+ }
+ static void doubleP_setitem(double *ary, size_t index, double value) {
+ ary[index] = value;
+ }
+
+
+typedef double doubleArray;
+
+SWIGINTERN doubleArray *new_doubleArray(size_t nelements){
+ return (double *)malloc((nelements)*sizeof(double));
+ }
+SWIGINTERN void delete_doubleArray(doubleArray *self){
+ free((char*)self);
+ }
+SWIGINTERN double doubleArray___getitem__(doubleArray *self,size_t index){
+ return self[index];
+ }
+SWIGINTERN void doubleArray___setitem__(doubleArray *self,size_t index,double value){
+ self[index] = value;
+ }
+SWIGINTERN double *doubleArray_cast(doubleArray *self){
+ return self;
+ }
+SWIGINTERN doubleArray *doubleArray_frompointer(double *t){
+ return (doubleArray *)(t);
+ }
+
+ static unsigned short *new_ushortP(size_t nelements) {
+ return (unsigned short *)malloc((nelements)*sizeof(unsigned short));
+ }
+
+ static void delete_ushortP(unsigned short *ary) {
+ free((char*)ary);
+ }
+
+ static unsigned short ushortP_getitem(unsigned short *ary, size_t index) {
+ return ary[index];
+ }
+ static void ushortP_setitem(unsigned short *ary, size_t index, unsigned short value) {
+ ary[index] = value;
+ }
+
+
+ #define SWIG_From_long PyLong_FromLong
+
+
+SWIGINTERNINLINE PyObject*
+SWIG_From_unsigned_SS_long (unsigned long value)
+{
+ return (value > LONG_MAX) ?
+ PyLong_FromUnsignedLong(value) : PyLong_FromLong((long)(value));
+}
+
+
+SWIGINTERNINLINE PyObject *
+SWIG_From_unsigned_SS_short (unsigned short value)
+{
+ return SWIG_From_unsigned_SS_long (value);
+}
+
+
+SWIGINTERN int
+SWIG_AsVal_unsigned_SS_short (PyObject * obj, unsigned short *val)
+{
+ unsigned long v;
+ int res = SWIG_AsVal_unsigned_SS_long (obj, &v);
+ if (SWIG_IsOK(res)) {
+ if ((v > USHRT_MAX)) {
+ return SWIG_OverflowError;
+ } else {
+ if (val) *val = (unsigned short)(v);
+ }
+ }
+ return res;
+}
+
+
+ static short *new_shortP(size_t nelements) {
+ return (short *)malloc((nelements)*sizeof(short));
+ }
+
+ static void delete_shortP(short *ary) {
+ free((char*)ary);
+ }
+
+ static short shortP_getitem(short *ary, size_t index) {
+ return ary[index];
+ }
+ static void shortP_setitem(short *ary, size_t index, short value) {
+ ary[index] = value;
+ }
+
+
+SWIGINTERNINLINE PyObject *
+SWIG_From_short (short value)
+{
+ return SWIG_From_long (value);
+}
+
+
+SWIGINTERN int
+SWIG_AsVal_short (PyObject * obj, short *val)
+{
+ long v;
+ int res = SWIG_AsVal_long (obj, &v);
+ if (SWIG_IsOK(res)) {
+ if ((v < SHRT_MIN || v > SHRT_MAX)) {
+ return SWIG_OverflowError;
+ } else {
+ if (val) *val = (short)(v);
+ }
+ }
+ return res;
+}
+
+
+typedef struct SWIGCDATA {
+ char *data;
+ size_t len;
+} SWIGCDATA;
+
+
+
+
+
+
+static SWIGCDATA cdata_void(void *ptr, size_t nelements)
+
+
+
+{
+ SWIGCDATA d;
+ d.data = (char *) ptr;
+
+
+
+ d.len = nelements;
+
+ return d;
+}
+
+
+
+
+
+SWIGINTERN swig_type_info*
+SWIG_pchar_descriptor(void)
+{
+ static int init = 0;
+ static swig_type_info* info = 0;
+ if (!init) {
+ info = SWIG_TypeQuery("_p_char");
+ init = 1;
+ }
+ return info;
+}
+
+
+SWIGINTERNINLINE PyObject *
+SWIG_FromCharPtrAndSize(const char* carray, size_t size)
+{
+ if (carray) {
+ if (size > INT_MAX) {
+ swig_type_info* pchar_descriptor = SWIG_pchar_descriptor();
+ return pchar_descriptor ?
+ SWIG_InternalNewPointerObj((char *)(carray), pchar_descriptor, 0) : SWIG_Py_Void();
+ } else {
+#if PY_VERSION_HEX >= 0x03000000
+ return PyUnicode_FromStringAndSize(carray, (int)(size));
+#else
+ return PyString_FromStringAndSize(carray, (int)(size));
+#endif
+ }
+ } else {
+ return SWIG_Py_Void();
+ }
+}
+
+
+SWIGINTERN int
+SWIG_AsCharPtrAndSize(PyObject *obj, char** cptr, size_t* psize, int *alloc)
+{
+#if PY_VERSION_HEX>=0x03000000
+ if (PyUnicode_Check(obj))
+#else
+ if (PyString_Check(obj))
+#endif
+ {
+ char *cstr; Py_ssize_t len;
+#if PY_VERSION_HEX>=0x03000000
+ if (!alloc && cptr) {
+ /* We can't allow converting without allocation, since the internal
+ representation of string in Python 3 is UCS-2/UCS-4 but we require
+ a UTF-8 representation.
+ TODO(bhy) More detailed explanation */
+ return SWIG_RuntimeError;
+ }
+ obj = PyUnicode_AsUTF8String(obj);
+ PyBytes_AsStringAndSize(obj, &cstr, &len);
+ if(alloc) *alloc = SWIG_NEWOBJ;
+#else
+ PyString_AsStringAndSize(obj, &cstr, &len);
+#endif
+ if (cptr) {
+ if (alloc) {
+ /*
+ In python the user should not be able to modify the inner
+ string representation. To warranty that, if you define
+ SWIG_PYTHON_SAFE_CSTRINGS, a new/copy of the python string
+ buffer is always returned.
+
+ The default behavior is just to return the pointer value,
+ so, be careful.
+ */
+#if defined(SWIG_PYTHON_SAFE_CSTRINGS)
+ if (*alloc != SWIG_OLDOBJ)
+#else
+ if (*alloc == SWIG_NEWOBJ)
+#endif
+ {
+ *cptr = (char *)memcpy((char *)malloc((len + 1)*sizeof(char)), cstr, sizeof(char)*(len + 1));
+ *alloc = SWIG_NEWOBJ;
+ }
+ else {
+ *cptr = cstr;
+ *alloc = SWIG_OLDOBJ;
+ }
+ } else {
+ #if PY_VERSION_HEX>=0x03000000
+ assert(0); /* Should never reach here in Python 3 */
+ #endif
+ *cptr = SWIG_Python_str_AsChar(obj);
+ }
+ }
+ if (psize) *psize = len + 1;
+#if PY_VERSION_HEX>=0x03000000
+ Py_XDECREF(obj);
+#endif
+ return SWIG_OK;
+ } else {
+ swig_type_info* pchar_descriptor = SWIG_pchar_descriptor();
+ if (pchar_descriptor) {
+ void* vptr = 0;
+ if (SWIG_ConvertPtr(obj, &vptr, pchar_descriptor, 0) == SWIG_OK) {
+ if (cptr) *cptr = (char *) vptr;
+ if (psize) *psize = vptr ? (strlen((char *)vptr) + 1) : 0;
+ if (alloc) *alloc = SWIG_OLDOBJ;
+ return SWIG_OK;
+ }
+ }
+ }
+ return SWIG_TypeError;
+}
+
+
+ char *my_fold(char *string, char *constraints, float *energy) {
+ char *struc;
+ struc = calloc(strlen(string)+1,sizeof(char));
+ if (constraints && fold_constrained)
+ strncpy(struc, constraints, strlen(string));
+ *energy = fold(string, struc);
+ if (constraints)
+ strncpy(constraints, struc, strlen(constraints));
+ return(struc);
+ }
+
+
+
+
+
+SWIGINTERNINLINE PyObject *
+SWIG_FromCharPtr(const char *cptr)
+{
+ return SWIG_FromCharPtrAndSize(cptr, (cptr ? strlen(cptr) : 0));
+}
+
+
+ char *my_cofold(char *string, char *constraints, float *energy) {
+ char *struc;
+ struc = calloc(strlen(string)+1,sizeof(char));
+ if (constraints && fold_constrained)
+ strncpy(struc, constraints, strlen(string));
+ if (cut_point > strlen(string)) {
+ cut_point = -1;
+ }
+ *energy = cofold(string, struc);
+ if (constraints)
+ strncpy(constraints, struc, strlen(constraints));
+ return(struc);
+ }
+
+
+ char *my_pf_fold(char *string, char *constraints, float *energy) {
+ char *struc;
+ struc = calloc(strlen(string)+1,sizeof(char));
+ if (constraints && fold_constrained)
+ strncpy(struc, constraints, strlen(string));
+ *energy = pf_fold(string, struc);
+ if (constraints)
+ strncpy(constraints, struc, strlen(constraints));
+ return(struc);
+ }
+
+
+SWIGINTERN int
+SWIG_AsVal_unsigned_SS_int (PyObject * obj, unsigned int *val)
+{
+ unsigned long v;
+ int res = SWIG_AsVal_unsigned_SS_long (obj, &v);
+ if (SWIG_IsOK(res)) {
+ if ((v > UINT_MAX)) {
+ return SWIG_OverflowError;
+ } else {
+ if (val) *val = (unsigned int)(v);
+ }
+ }
+ return res;
+}
+
+
+SWIGINTERNINLINE PyObject *
+SWIG_From_char (char c)
+{
+ return SWIG_FromCharPtrAndSize(&c,1);
+}
+
+
+ char *my_co_pf_fold(char *string, char *constraints, float *FA, float *FB, float *FcAB, float *FAB) {
+ char *struc;
+ float en;
+ cofoldF temp;
+ struc = calloc(strlen(string)+1,sizeof(char));
+ if (constraints && fold_constrained)
+ strncpy(struc, constraints, strlen(string));
+ temp=co_pf_fold(string, struc);
+ *FAB = temp.FAB;
+ *FcAB = temp.FcAB;
+ *FA = temp.FA;
+ *FB = temp.FB;
+ if (constraints)
+ strncpy(constraints, struc, strlen(constraints));
+ return(struc);
+ }
+
+
+ void my_get_concentrations(double FcAB, double FcAA, double FcBB, double FEA, double FEB, double A0, double B0, double *AB, double *AA, double *BB, double *A, double *B) {
+ ConcEnt *temp;
+ double *concis;
+ concis = (double *)calloc(4,sizeof(double));
+ concis[0]=A0;
+ concis[1]=B0;
+ concis[2]=0;
+ temp=get_concentrations(FcAB,FcAA,FcBB,FEA,FEB,concis);
+ *AB=temp->ABc;
+ *AA=temp->AAc;
+ *BB=temp->BBc;
+ *A=temp->Ac;
+ *B=temp->Bc;
+ free(concis);
+ free(temp);
+ return;
+ }
+
+
+ char *my_inverse_fold(char *start, const char *target, float *cost) {
+ char *seq;
+ int n;
+ n = strlen(target);
+ seq = random_string(n, symbolset);
+ if (start)
+ strncpy(seq, start, strlen(start));
+ *cost = inverse_fold(seq, target);
+ if (start)
+ /* for backward compatibility modify start */
+ strncpy(start, seq, strlen(start));
+ return(seq);
+ }
+
+
+ char *my_inverse_pf_fold(char *start, const char *target, float *cost) {
+ char *seq;
+ int n;
+ n = strlen(target);
+ seq = random_string(n, symbolset);
+ if (start) strncpy(seq, start, n);
+ *cost = inverse_pf_fold(seq, target);
+ if (start)
+ /* for backward compatibility modify start */
+ strncpy(start, seq, strlen(start));
+ return(seq);
+ }
+
+
+SWIGINTERN int
+SWIG_AsCharArray(PyObject * obj, char *val, size_t size)
+{
+ char* cptr = 0; size_t csize = 0; int alloc = SWIG_OLDOBJ;
+ int res = SWIG_AsCharPtrAndSize(obj, &cptr, &csize, &alloc);
+ if (SWIG_IsOK(res)) {
+ if ((csize == size + 1) && cptr && !(cptr[csize-1])) --csize;
+ if (csize <= size) {
+ if (val) {
+ if (csize) memcpy(val, cptr, csize*sizeof(char));
+ if (csize < size) memset(val + csize, 0, (size - csize)*sizeof(char));
+ }
+ if (alloc == SWIG_NEWOBJ) {
+ free((char*)cptr);
+ res = SWIG_DelNewMask(res);
+ }
+ return res;
+ }
+ if (alloc == SWIG_NEWOBJ) free((char*)cptr);
+ }
+ return SWIG_TypeError;
+}
+
+
+SWIGINTERN int
+SWIG_AsVal_char (PyObject * obj, char *val)
+{
+ int res = SWIG_AsCharArray(obj, val, 1);
+ if (!SWIG_IsOK(res)) {
+ long v;
+ res = SWIG_AddCast(SWIG_AsVal_long (obj, &v));
+ if (SWIG_IsOK(res)) {
+ if ((CHAR_MIN <= v) && (v <= CHAR_MAX)) {
+ if (val) *val = (char)(v);
+ } else {
+ res = SWIG_OverflowError;
+ }
+ }
+ }
+ return res;
+}
+
+
+ char *my_alifold(char **strings, char *constraints, float *energy) {
+ char *struc;
+ struc = calloc(strlen(strings[0])+1,sizeof(char));
+ if (constraints && fold_constrained)
+ strncpy(struc, constraints, strlen(strings[0]));
+ *energy = alifold(strings, struc);
+ if (constraints)
+ strncpy(constraints, struc, strlen(constraints));
+ return(struc);
+ }
+
+SWIGINTERN COORDINATE *COORDINATE_get(COORDINATE *self,int i){
+ return self+i;
+ }
+
+ COORDINATE *get_xy_coordinates(const char *structure){
+ int i;
+ short *table = make_pair_table(structure);
+ short length = (short) strlen(structure);
+
+ COORDINATE *coords = (COORDINATE *) space((length+1)*sizeof(COORDINATE));
+ float *X = (float *) space((length+1)*sizeof(float));
+ float *Y = (float *) space((length+1)*sizeof(float));
+
+ switch(rna_plot_type){
+ case VRNA_PLOT_TYPE_SIMPLE: simple_xy_coordinates(table, X, Y);
+ break;
+ case VRNA_PLOT_TYPE_CIRCULAR: simple_circplot_coordinates(table, X, Y);
+ break;
+ default: naview_xy_coordinates(table, X, Y);
+ break;
+ }
+
+ for(i=0;i<=length;i++){
+ coords[i].X = X[i];
+ coords[i].Y = Y[i];
+ }
+ free(table);
+ free(X);
+ free(Y);
+ return(coords);
+ }
+
+SWIGINTERN SOLUTION *SOLUTION_get(SOLUTION *self,int i){
+// static int size=-1;
+// if (size<0) {
+// SOLUTION *s;
+// for (s=self; s->structure; s++);
+// size= (int) (s-self);
+// }
+// if (i>=size) {
+// warn("value out of range");
+// return NULL;
+// }
+ return self+i;
+ }
+SWIGINTERN int SOLUTION_size(SOLUTION *self){
+ SOLUTION *s;
+ for (s=self; s->structure; s++);
+ return (int)(s-self);
+ }
+SWIGINTERN void delete_SOLUTION(SOLUTION *self){
+ SOLUTION *s;
+ for (s=self; s->structure; s++) free(s->structure);
+ free(self);
+ }
+
+double get_pr(int i, int j) {
+ int ii;
+ if (i>j) {ii=i; i=j; j=ii;}
+ return pr[iindx[i]-j];
+}
+
+
+SWIGINTERNINLINE PyObject*
+ SWIG_From_unsigned_SS_int (unsigned int value)
+{
+ return PyInt_FromSize_t((size_t) value);
+}
+
+
+void *deref_any(void **ptr, int index) {
+ /* dereference arbitray pointer */
+ return (void *) ptr[index];
+}
+
+
+char *get_aligned_line(int i) {
+ i = i % 2;
+ return aligned_line[i];
+}
+
+
+ short *make_loop_index(const char *structure) {
+ /* number each position by which loop it belongs to (positions start at 0) */
+ int i,hx,l,nl;
+ int length;
+ short *stack;
+ short *loop;
+ length = strlen(structure);
+ stack = (short *) space(sizeof(short)*(length+1));
+ loop = (short *) space(sizeof(short)*(length+2));
+ hx=l=nl=0;
+ for (i=0; i<length; i++) {
+ if (structure[i] == '(') {
+ nl++; l=nl;
+ stack[hx++]=i;
+ }
+ loop[i]=l;
+ if (structure[i] ==')') {
+ --hx;
+ if (hx>0)
+ l = loop[stack[hx-1]]; /* index of enclosing loop */
+ else l=0; /* external loop has index 0 */
+ if (hx<0) {
+ fprintf(stderr, "%s\n", structure);
+ nrerror("unbalanced brackets in make_pair_table");
+ }
+ }
+ }
+ free(stack);
+ return loop;
+ }
+
+
+short *encode_seq(char *sequence) {
+ unsigned int i,l;
+ short *S;
+ l = strlen(sequence);
+ S = (short *) space(sizeof(short)*(l+2));
+ S[0] = (short) l;
+
+ /* make numerical encoding of sequence */
+ for (i=1; i<=l; i++)
+ S[i]= (short) encode_char(toupper(sequence[i-1]));
+
+ /* for circular folding add first base at position n+1 */
+ S[l+1] = S[1];
+
+ return S;
+}
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+SWIGINTERN PyObject *_wrap_new_intP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ size_t arg1 ;
+ size_t val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:new_intP",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_size_t(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new_intP" "', argument " "1"" of type '" "size_t""'");
+ }
+ arg1 = (size_t)(val1);
+ result = (int *)new_intP(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_int, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_intP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int *arg1 = (int *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_intP",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_intP" "', argument " "1"" of type '" "int *""'");
+ }
+ arg1 = (int *)(argp1);
+ delete_intP(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_intP_getitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int *arg1 = (int *) 0 ;
+ size_t arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:intP_getitem",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "intP_getitem" "', argument " "1"" of type '" "int *""'");
+ }
+ arg1 = (int *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "intP_getitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ result = (int)intP_getitem(arg1,arg2);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_intP_setitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int *arg1 = (int *) 0 ;
+ size_t arg2 ;
+ int arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:intP_setitem",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "intP_setitem" "', argument " "1"" of type '" "int *""'");
+ }
+ arg1 = (int *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "intP_setitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "intP_setitem" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ intP_setitem(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_new_intArray(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ size_t arg1 ;
+ size_t val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ intArray *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:new_intArray",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_size_t(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new_intArray" "', argument " "1"" of type '" "size_t""'");
+ }
+ arg1 = (size_t)(val1);
+ result = (intArray *)new_intArray(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_intArray, SWIG_POINTER_NEW | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_intArray(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ intArray *arg1 = (intArray *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_intArray",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_intArray, SWIG_POINTER_DISOWN | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_intArray" "', argument " "1"" of type '" "intArray *""'");
+ }
+ arg1 = (intArray *)(argp1);
+ delete_intArray(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_intArray___getitem__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ intArray *arg1 = (intArray *) 0 ;
+ size_t arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:intArray___getitem__",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_intArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "intArray___getitem__" "', argument " "1"" of type '" "intArray *""'");
+ }
+ arg1 = (intArray *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "intArray___getitem__" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ result = (int)intArray___getitem__(arg1,arg2);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_intArray___setitem__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ intArray *arg1 = (intArray *) 0 ;
+ size_t arg2 ;
+ int arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:intArray___setitem__",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_intArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "intArray___setitem__" "', argument " "1"" of type '" "intArray *""'");
+ }
+ arg1 = (intArray *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "intArray___setitem__" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "intArray___setitem__" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ intArray___setitem__(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_intArray_cast(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ intArray *arg1 = (intArray *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:intArray_cast",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_intArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "intArray_cast" "', argument " "1"" of type '" "intArray *""'");
+ }
+ arg1 = (intArray *)(argp1);
+ result = (int *)intArray_cast(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_int, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_intArray_frompointer(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int *arg1 = (int *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ intArray *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:intArray_frompointer",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "intArray_frompointer" "', argument " "1"" of type '" "int *""'");
+ }
+ arg1 = (int *)(argp1);
+ result = (intArray *)intArray_frompointer(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_intArray, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *intArray_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *obj;
+ if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
+ SWIG_TypeNewClientData(SWIGTYPE_p_intArray, SWIG_NewClientData(obj));
+ return SWIG_Py_Void();
+}
+
+SWIGINTERN PyObject *_wrap_new_floatP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ size_t arg1 ;
+ size_t val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ float *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:new_floatP",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_size_t(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new_floatP" "', argument " "1"" of type '" "size_t""'");
+ }
+ arg1 = (size_t)(val1);
+ result = (float *)new_floatP(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_float, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_floatP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_floatP",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_floatP" "', argument " "1"" of type '" "float *""'");
+ }
+ arg1 = (float *)(argp1);
+ delete_floatP(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_floatP_getitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ size_t arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:floatP_getitem",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "floatP_getitem" "', argument " "1"" of type '" "float *""'");
+ }
+ arg1 = (float *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "floatP_getitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ result = (float)floatP_getitem(arg1,arg2);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_floatP_setitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ size_t arg2 ;
+ float arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ float val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:floatP_setitem",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "floatP_setitem" "', argument " "1"" of type '" "float *""'");
+ }
+ arg1 = (float *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "floatP_setitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ ecode3 = SWIG_AsVal_float(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "floatP_setitem" "', argument " "3"" of type '" "float""'");
+ }
+ arg3 = (float)(val3);
+ floatP_setitem(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_new_floatArray(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ size_t arg1 ;
+ size_t val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ floatArray *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:new_floatArray",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_size_t(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new_floatArray" "', argument " "1"" of type '" "size_t""'");
+ }
+ arg1 = (size_t)(val1);
+ result = (floatArray *)new_floatArray(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_floatArray, SWIG_POINTER_NEW | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_floatArray(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ floatArray *arg1 = (floatArray *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_floatArray",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_floatArray, SWIG_POINTER_DISOWN | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_floatArray" "', argument " "1"" of type '" "floatArray *""'");
+ }
+ arg1 = (floatArray *)(argp1);
+ delete_floatArray(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_floatArray___getitem__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ floatArray *arg1 = (floatArray *) 0 ;
+ size_t arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:floatArray___getitem__",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_floatArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "floatArray___getitem__" "', argument " "1"" of type '" "floatArray *""'");
+ }
+ arg1 = (floatArray *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "floatArray___getitem__" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ result = (float)floatArray___getitem__(arg1,arg2);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_floatArray___setitem__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ floatArray *arg1 = (floatArray *) 0 ;
+ size_t arg2 ;
+ float arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ float val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:floatArray___setitem__",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_floatArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "floatArray___setitem__" "', argument " "1"" of type '" "floatArray *""'");
+ }
+ arg1 = (floatArray *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "floatArray___setitem__" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ ecode3 = SWIG_AsVal_float(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "floatArray___setitem__" "', argument " "3"" of type '" "float""'");
+ }
+ arg3 = (float)(val3);
+ floatArray___setitem__(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_floatArray_cast(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ floatArray *arg1 = (floatArray *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ float *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:floatArray_cast",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_floatArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "floatArray_cast" "', argument " "1"" of type '" "floatArray *""'");
+ }
+ arg1 = (floatArray *)(argp1);
+ result = (float *)floatArray_cast(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_float, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_floatArray_frompointer(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ floatArray *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:floatArray_frompointer",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "floatArray_frompointer" "', argument " "1"" of type '" "float *""'");
+ }
+ arg1 = (float *)(argp1);
+ result = (floatArray *)floatArray_frompointer(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_floatArray, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *floatArray_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *obj;
+ if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
+ SWIG_TypeNewClientData(SWIGTYPE_p_floatArray, SWIG_NewClientData(obj));
+ return SWIG_Py_Void();
+}
+
+SWIGINTERN PyObject *_wrap_new_doubleP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ size_t arg1 ;
+ size_t val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ double *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:new_doubleP",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_size_t(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new_doubleP" "', argument " "1"" of type '" "size_t""'");
+ }
+ arg1 = (size_t)(val1);
+ result = (double *)new_doubleP(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_double, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_doubleP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *arg1 = (double *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_doubleP",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_doubleP" "', argument " "1"" of type '" "double *""'");
+ }
+ arg1 = (double *)(argp1);
+ delete_doubleP(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_doubleP_getitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *arg1 = (double *) 0 ;
+ size_t arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:doubleP_getitem",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "doubleP_getitem" "', argument " "1"" of type '" "double *""'");
+ }
+ arg1 = (double *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "doubleP_getitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ result = (double)doubleP_getitem(arg1,arg2);
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_doubleP_setitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *arg1 = (double *) 0 ;
+ size_t arg2 ;
+ double arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ double val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:doubleP_setitem",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "doubleP_setitem" "', argument " "1"" of type '" "double *""'");
+ }
+ arg1 = (double *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "doubleP_setitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ ecode3 = SWIG_AsVal_double(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "doubleP_setitem" "', argument " "3"" of type '" "double""'");
+ }
+ arg3 = (double)(val3);
+ doubleP_setitem(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_new_doubleArray(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ size_t arg1 ;
+ size_t val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ doubleArray *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:new_doubleArray",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_size_t(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new_doubleArray" "', argument " "1"" of type '" "size_t""'");
+ }
+ arg1 = (size_t)(val1);
+ result = (doubleArray *)new_doubleArray(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_doubleArray, SWIG_POINTER_NEW | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_doubleArray(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ doubleArray *arg1 = (doubleArray *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_doubleArray",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_doubleArray, SWIG_POINTER_DISOWN | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_doubleArray" "', argument " "1"" of type '" "doubleArray *""'");
+ }
+ arg1 = (doubleArray *)(argp1);
+ delete_doubleArray(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_doubleArray___getitem__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ doubleArray *arg1 = (doubleArray *) 0 ;
+ size_t arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:doubleArray___getitem__",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_doubleArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "doubleArray___getitem__" "', argument " "1"" of type '" "doubleArray *""'");
+ }
+ arg1 = (doubleArray *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "doubleArray___getitem__" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ result = (double)doubleArray___getitem__(arg1,arg2);
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_doubleArray___setitem__(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ doubleArray *arg1 = (doubleArray *) 0 ;
+ size_t arg2 ;
+ double arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ double val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:doubleArray___setitem__",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_doubleArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "doubleArray___setitem__" "', argument " "1"" of type '" "doubleArray *""'");
+ }
+ arg1 = (doubleArray *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "doubleArray___setitem__" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ ecode3 = SWIG_AsVal_double(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "doubleArray___setitem__" "', argument " "3"" of type '" "double""'");
+ }
+ arg3 = (double)(val3);
+ doubleArray___setitem__(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_doubleArray_cast(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ doubleArray *arg1 = (doubleArray *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ double *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:doubleArray_cast",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_doubleArray, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "doubleArray_cast" "', argument " "1"" of type '" "doubleArray *""'");
+ }
+ arg1 = (doubleArray *)(argp1);
+ result = (double *)doubleArray_cast(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_double, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_doubleArray_frompointer(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *arg1 = (double *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ doubleArray *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:doubleArray_frompointer",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "doubleArray_frompointer" "', argument " "1"" of type '" "double *""'");
+ }
+ arg1 = (double *)(argp1);
+ result = (doubleArray *)doubleArray_frompointer(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_doubleArray, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *doubleArray_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *obj;
+ if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
+ SWIG_TypeNewClientData(SWIGTYPE_p_doubleArray, SWIG_NewClientData(obj));
+ return SWIG_Py_Void();
+}
+
+SWIGINTERN PyObject *_wrap_new_ushortP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ size_t arg1 ;
+ size_t val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ unsigned short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:new_ushortP",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_size_t(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new_ushortP" "', argument " "1"" of type '" "size_t""'");
+ }
+ arg1 = (size_t)(val1);
+ result = (unsigned short *)new_ushortP(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_unsigned_short, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_ushortP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ unsigned short *arg1 = (unsigned short *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_ushortP",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_unsigned_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_ushortP" "', argument " "1"" of type '" "unsigned short *""'");
+ }
+ arg1 = (unsigned short *)(argp1);
+ delete_ushortP(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_ushortP_getitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ unsigned short *arg1 = (unsigned short *) 0 ;
+ size_t arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ unsigned short result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:ushortP_getitem",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_unsigned_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "ushortP_getitem" "', argument " "1"" of type '" "unsigned short *""'");
+ }
+ arg1 = (unsigned short *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "ushortP_getitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ result = (unsigned short)ushortP_getitem(arg1,arg2);
+ resultobj = SWIG_From_unsigned_SS_short((unsigned short)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_ushortP_setitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ unsigned short *arg1 = (unsigned short *) 0 ;
+ size_t arg2 ;
+ unsigned short arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ unsigned short val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:ushortP_setitem",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_unsigned_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "ushortP_setitem" "', argument " "1"" of type '" "unsigned short *""'");
+ }
+ arg1 = (unsigned short *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "ushortP_setitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ ecode3 = SWIG_AsVal_unsigned_SS_short(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "ushortP_setitem" "', argument " "3"" of type '" "unsigned short""'");
+ }
+ arg3 = (unsigned short)(val3);
+ ushortP_setitem(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_new_shortP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ size_t arg1 ;
+ size_t val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:new_shortP",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_size_t(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "new_shortP" "', argument " "1"" of type '" "size_t""'");
+ }
+ arg1 = (size_t)(val1);
+ result = (short *)new_shortP(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_short, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_shortP(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_shortP",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_shortP" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ delete_shortP(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_shortP_getitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ size_t arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ short result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:shortP_getitem",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "shortP_getitem" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "shortP_getitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ result = (short)shortP_getitem(arg1,arg2);
+ resultobj = SWIG_From_short((short)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_shortP_setitem(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ size_t arg2 ;
+ short arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ short val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:shortP_setitem",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "shortP_setitem" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "shortP_setitem" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ ecode3 = SWIG_AsVal_short(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "shortP_setitem" "', argument " "3"" of type '" "short""'");
+ }
+ arg3 = (short)(val3);
+ shortP_setitem(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_cdata(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ void *arg1 = (void *) 0 ;
+ size_t arg2 = (size_t) 1 ;
+ int res1 ;
+ size_t val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ SWIGCDATA result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O|O:cdata",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0,SWIG_as_voidptrptr(&arg1), 0, 0);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "cdata" "', argument " "1"" of type '" "void *""'");
+ }
+ if (obj1) {
+ ecode2 = SWIG_AsVal_size_t(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "cdata" "', argument " "2"" of type '" "size_t""'");
+ }
+ arg2 = (size_t)(val2);
+ }
+ result = cdata_void(arg1,arg2);
+ resultobj = SWIG_FromCharPtrAndSize((&result)->data,(&result)->len);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_memmove(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ void *arg1 = (void *) 0 ;
+ void *arg2 = (void *) 0 ;
+ size_t arg3 ;
+ int res1 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ size_t size2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:memmove",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0,SWIG_as_voidptrptr(&arg1), 0, 0);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "memmove" "', argument " "1"" of type '" "void *""'");
+ }
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, &size2, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "memmove" "', argument " "2"" of type '" "void const *""'");
+ }
+ arg2 = (void *)(buf2);
+ arg3 = (size_t)(size2);
+ memmove(arg1,(void const *)arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) NULL ;
+ float *arg3 = (float *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ float temp3 ;
+ int res3 = SWIG_TMPOBJ ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ arg3 = &temp3;
+ if (!PyArg_ParseTuple(args,(char *)"O|O:fold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "fold" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ if (obj1) {
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "fold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ }
+ result = (char *)my_fold(arg1,arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (SWIG_IsTmpObj(res3)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg3)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res3) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg3), SWIGTYPE_p_float, new_flags));
+ }
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_logML_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""logML""' of type '""int""'");
+ }
+ logML = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_logML_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(logML));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_uniq_ML_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""uniq_ML""' of type '""int""'");
+ }
+ uniq_ML = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_uniq_ML_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(uniq_ML));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_cut_point_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""cut_point""' of type '""int""'");
+ }
+ cut_point = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_cut_point_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(cut_point));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_eos_debug_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""eos_debug""' of type '""int""'");
+ }
+ eos_debug = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_eos_debug_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(eos_debug));
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_fold_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ paramT *arg3 = (paramT *) 0 ;
+ int arg4 ;
+ int arg5 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ int val5 ;
+ int ecode5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:fold_par",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "fold_par" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "fold_par" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "fold_par" "', argument " "3"" of type '" "paramT *""'");
+ }
+ arg3 = (paramT *)(argp3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "fold_par" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ ecode5 = SWIG_AsVal_int(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "fold_par" "', argument " "5"" of type '" "int""'");
+ }
+ arg5 = (int)(val5);
+ result = (float)fold_par((char const *)arg1,arg2,arg3,arg4,arg5);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_circfold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:circfold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "circfold" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "circfold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (float)circfold((char const *)arg1,arg2);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:energy_of_structure",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_structure" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_structure" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "energy_of_structure" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ result = (float)energy_of_structure((char const *)arg1,(char const *)arg2,arg3);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_struct_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ paramT *arg3 = (paramT *) 0 ;
+ int arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:energy_of_struct_par",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_struct_par" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_struct_par" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "energy_of_struct_par" "', argument " "3"" of type '" "paramT *""'");
+ }
+ arg3 = (paramT *)(argp3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "energy_of_struct_par" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (float)energy_of_struct_par((char const *)arg1,(char const *)arg2,arg3,arg4);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_circ_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:energy_of_circ_structure",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_circ_structure" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_circ_structure" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "energy_of_circ_structure" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ result = (float)energy_of_circ_structure((char const *)arg1,(char const *)arg2,arg3);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_circ_struct_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ paramT *arg3 = (paramT *) 0 ;
+ int arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:energy_of_circ_struct_par",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_circ_struct_par" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_circ_struct_par" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "energy_of_circ_struct_par" "', argument " "3"" of type '" "paramT *""'");
+ }
+ arg3 = (paramT *)(argp3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "energy_of_circ_struct_par" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (float)energy_of_circ_struct_par((char const *)arg1,(char const *)arg2,arg3,arg4);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_gquad_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:energy_of_gquad_structure",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_gquad_structure" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_gquad_structure" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "energy_of_gquad_structure" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ result = (float)energy_of_gquad_structure((char const *)arg1,(char const *)arg2,arg3);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_structure_pt(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ short *arg2 = (short *) 0 ;
+ short *arg3 = (short *) 0 ;
+ short *arg4 = (short *) 0 ;
+ int arg5 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ int val5 ;
+ int ecode5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:energy_of_structure_pt",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_structure_pt" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_structure_pt" "', argument " "2"" of type '" "short *""'");
+ }
+ arg2 = (short *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "energy_of_structure_pt" "', argument " "3"" of type '" "short *""'");
+ }
+ arg3 = (short *)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "energy_of_structure_pt" "', argument " "4"" of type '" "short *""'");
+ }
+ arg4 = (short *)(argp4);
+ ecode5 = SWIG_AsVal_int(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "energy_of_structure_pt" "', argument " "5"" of type '" "int""'");
+ }
+ arg5 = (int)(val5);
+ result = (int)energy_of_structure_pt((char const *)arg1,arg2,arg3,arg4,arg5);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_struct_pt_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ short *arg2 = (short *) 0 ;
+ short *arg3 = (short *) 0 ;
+ short *arg4 = (short *) 0 ;
+ paramT *arg5 = (paramT *) 0 ;
+ int arg6 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ int val6 ;
+ int ecode6 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOO:energy_of_struct_pt_par",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_struct_pt_par" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_struct_pt_par" "', argument " "2"" of type '" "short *""'");
+ }
+ arg2 = (short *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "energy_of_struct_pt_par" "', argument " "3"" of type '" "short *""'");
+ }
+ arg3 = (short *)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "energy_of_struct_pt_par" "', argument " "4"" of type '" "short *""'");
+ }
+ arg4 = (short *)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "energy_of_struct_pt_par" "', argument " "5"" of type '" "paramT *""'");
+ }
+ arg5 = (paramT *)(argp5);
+ ecode6 = SWIG_AsVal_int(obj5, &val6);
+ if (!SWIG_IsOK(ecode6)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode6), "in method '" "energy_of_struct_pt_par" "', argument " "6"" of type '" "int""'");
+ }
+ arg6 = (int)(val6);
+ result = (int)energy_of_struct_pt_par((char const *)arg1,arg2,arg3,arg4,arg5,arg6);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":free_arrays")) SWIG_fail;
+ free_arrays();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_parenthesis_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ bondT *arg2 = (bondT *) 0 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:parenthesis_structure",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "parenthesis_structure" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_bondT, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "parenthesis_structure" "', argument " "2"" of type '" "bondT *""'");
+ }
+ arg2 = (bondT *)(argp2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "parenthesis_structure" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ parenthesis_structure(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_parenthesis_zuker(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ bondT *arg2 = (bondT *) 0 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:parenthesis_zuker",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "parenthesis_zuker" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_bondT, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "parenthesis_zuker" "', argument " "2"" of type '" "bondT *""'");
+ }
+ arg2 = (bondT *)(argp2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "parenthesis_zuker" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ parenthesis_zuker(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_letter_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ bondT *arg2 = (bondT *) 0 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:letter_structure",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "letter_structure" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_bondT, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "letter_structure" "', argument " "2"" of type '" "bondT *""'");
+ }
+ arg2 = (bondT *)(argp2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "letter_structure" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ letter_structure(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_fold_params(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":update_fold_params")) SWIG_fail;
+ update_fold_params();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_fold_params_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ paramT *arg1 = (paramT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:update_fold_params_par",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "update_fold_params_par" "', argument " "1"" of type '" "paramT *""'");
+ }
+ arg1 = (paramT *)(argp1);
+ update_fold_params_par(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_backtrack_fold_from_pair(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int arg2 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:backtrack_fold_from_pair",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "backtrack_fold_from_pair" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "backtrack_fold_from_pair" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "backtrack_fold_from_pair" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ result = (char *)backtrack_fold_from_pair(arg1,arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_move(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ int arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:energy_of_move",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_move" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_move" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "energy_of_move" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "energy_of_move" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (float)energy_of_move((char const *)arg1,(char const *)arg2,arg3,arg4);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_move_pt(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ short *arg2 = (short *) 0 ;
+ short *arg3 = (short *) 0 ;
+ int arg4 ;
+ int arg5 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ int val5 ;
+ int ecode5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:energy_of_move_pt",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_move_pt" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_move_pt" "', argument " "2"" of type '" "short *""'");
+ }
+ arg2 = (short *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "energy_of_move_pt" "', argument " "3"" of type '" "short *""'");
+ }
+ arg3 = (short *)(argp3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "energy_of_move_pt" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ ecode5 = SWIG_AsVal_int(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "energy_of_move_pt" "', argument " "5"" of type '" "int""'");
+ }
+ arg5 = (int)(val5);
+ result = (int)energy_of_move_pt(arg1,arg2,arg3,arg4,arg5);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_loop_energy(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ short *arg2 = (short *) 0 ;
+ short *arg3 = (short *) 0 ;
+ int arg4 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:loop_energy",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "loop_energy" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "loop_energy" "', argument " "2"" of type '" "short *""'");
+ }
+ arg2 = (short *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "loop_energy" "', argument " "3"" of type '" "short *""'");
+ }
+ arg3 = (short *)(argp3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "loop_energy" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (int)loop_energy(arg1,arg2,arg3,arg4);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_fold_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int **arg1 = (int **) 0 ;
+ int **arg2 = (int **) 0 ;
+ int **arg3 = (int **) 0 ;
+ int **arg4 = (int **) 0 ;
+ int **arg5 = (int **) 0 ;
+ char **arg6 = (char **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOO:export_fold_arrays",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "export_fold_arrays" "', argument " "1"" of type '" "int **""'");
+ }
+ arg1 = (int **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "export_fold_arrays" "', argument " "2"" of type '" "int **""'");
+ }
+ arg2 = (int **)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "export_fold_arrays" "', argument " "3"" of type '" "int **""'");
+ }
+ arg3 = (int **)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "export_fold_arrays" "', argument " "4"" of type '" "int **""'");
+ }
+ arg4 = (int **)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "export_fold_arrays" "', argument " "5"" of type '" "int **""'");
+ }
+ arg5 = (int **)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "export_fold_arrays" "', argument " "6"" of type '" "char **""'");
+ }
+ arg6 = (char **)(argp6);
+ export_fold_arrays(arg1,arg2,arg3,arg4,arg5,arg6);
+ resultobj = SWIG_Py_Void();
+ {
+ free(arg6);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg6);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_fold_arrays_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int **arg1 = (int **) 0 ;
+ int **arg2 = (int **) 0 ;
+ int **arg3 = (int **) 0 ;
+ int **arg4 = (int **) 0 ;
+ int **arg5 = (int **) 0 ;
+ char **arg6 = (char **) 0 ;
+ paramT **arg7 = (paramT **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ void *argp7 = 0 ;
+ int res7 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOO:export_fold_arrays_par",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "export_fold_arrays_par" "', argument " "1"" of type '" "int **""'");
+ }
+ arg1 = (int **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "export_fold_arrays_par" "', argument " "2"" of type '" "int **""'");
+ }
+ arg2 = (int **)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "export_fold_arrays_par" "', argument " "3"" of type '" "int **""'");
+ }
+ arg3 = (int **)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "export_fold_arrays_par" "', argument " "4"" of type '" "int **""'");
+ }
+ arg4 = (int **)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "export_fold_arrays_par" "', argument " "5"" of type '" "int **""'");
+ }
+ arg5 = (int **)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "export_fold_arrays_par" "', argument " "6"" of type '" "char **""'");
+ }
+ arg6 = (char **)(argp6);
+ res7 = SWIG_ConvertPtr(obj6, &argp7,SWIGTYPE_p_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res7)) {
+ SWIG_exception_fail(SWIG_ArgError(res7), "in method '" "export_fold_arrays_par" "', argument " "7"" of type '" "paramT **""'");
+ }
+ arg7 = (paramT **)(argp7);
+ export_fold_arrays_par(arg1,arg2,arg3,arg4,arg5,arg6,arg7);
+ resultobj = SWIG_Py_Void();
+ {
+ free(arg6);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg6);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_circfold_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int *arg1 = (int *) 0 ;
+ int *arg2 = (int *) 0 ;
+ int *arg3 = (int *) 0 ;
+ int *arg4 = (int *) 0 ;
+ int **arg5 = (int **) 0 ;
+ int **arg6 = (int **) 0 ;
+ int **arg7 = (int **) 0 ;
+ int **arg8 = (int **) 0 ;
+ int **arg9 = (int **) 0 ;
+ int **arg10 = (int **) 0 ;
+ char **arg11 = (char **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ void *argp7 = 0 ;
+ int res7 = 0 ;
+ void *argp8 = 0 ;
+ int res8 = 0 ;
+ void *argp9 = 0 ;
+ int res9 = 0 ;
+ void *argp10 = 0 ;
+ int res10 = 0 ;
+ void *argp11 = 0 ;
+ int res11 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+ PyObject * obj7 = 0 ;
+ PyObject * obj8 = 0 ;
+ PyObject * obj9 = 0 ;
+ PyObject * obj10 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOOOOOO:export_circfold_arrays",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6,&obj7,&obj8,&obj9,&obj10)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "export_circfold_arrays" "', argument " "1"" of type '" "int *""'");
+ }
+ arg1 = (int *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "export_circfold_arrays" "', argument " "2"" of type '" "int *""'");
+ }
+ arg2 = (int *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "export_circfold_arrays" "', argument " "3"" of type '" "int *""'");
+ }
+ arg3 = (int *)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "export_circfold_arrays" "', argument " "4"" of type '" "int *""'");
+ }
+ arg4 = (int *)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "export_circfold_arrays" "', argument " "5"" of type '" "int **""'");
+ }
+ arg5 = (int **)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "export_circfold_arrays" "', argument " "6"" of type '" "int **""'");
+ }
+ arg6 = (int **)(argp6);
+ res7 = SWIG_ConvertPtr(obj6, &argp7,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res7)) {
+ SWIG_exception_fail(SWIG_ArgError(res7), "in method '" "export_circfold_arrays" "', argument " "7"" of type '" "int **""'");
+ }
+ arg7 = (int **)(argp7);
+ res8 = SWIG_ConvertPtr(obj7, &argp8,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res8)) {
+ SWIG_exception_fail(SWIG_ArgError(res8), "in method '" "export_circfold_arrays" "', argument " "8"" of type '" "int **""'");
+ }
+ arg8 = (int **)(argp8);
+ res9 = SWIG_ConvertPtr(obj8, &argp9,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res9)) {
+ SWIG_exception_fail(SWIG_ArgError(res9), "in method '" "export_circfold_arrays" "', argument " "9"" of type '" "int **""'");
+ }
+ arg9 = (int **)(argp9);
+ res10 = SWIG_ConvertPtr(obj9, &argp10,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res10)) {
+ SWIG_exception_fail(SWIG_ArgError(res10), "in method '" "export_circfold_arrays" "', argument " "10"" of type '" "int **""'");
+ }
+ arg10 = (int **)(argp10);
+ res11 = SWIG_ConvertPtr(obj10, &argp11,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res11)) {
+ SWIG_exception_fail(SWIG_ArgError(res11), "in method '" "export_circfold_arrays" "', argument " "11"" of type '" "char **""'");
+ }
+ arg11 = (char **)(argp11);
+ export_circfold_arrays(arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9,arg10,arg11);
+ resultobj = SWIG_Py_Void();
+ {
+ free(arg11);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg11);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_circfold_arrays_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int *arg1 = (int *) 0 ;
+ int *arg2 = (int *) 0 ;
+ int *arg3 = (int *) 0 ;
+ int *arg4 = (int *) 0 ;
+ int **arg5 = (int **) 0 ;
+ int **arg6 = (int **) 0 ;
+ int **arg7 = (int **) 0 ;
+ int **arg8 = (int **) 0 ;
+ int **arg9 = (int **) 0 ;
+ int **arg10 = (int **) 0 ;
+ char **arg11 = (char **) 0 ;
+ paramT **arg12 = (paramT **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ void *argp7 = 0 ;
+ int res7 = 0 ;
+ void *argp8 = 0 ;
+ int res8 = 0 ;
+ void *argp9 = 0 ;
+ int res9 = 0 ;
+ void *argp10 = 0 ;
+ int res10 = 0 ;
+ void *argp11 = 0 ;
+ int res11 = 0 ;
+ void *argp12 = 0 ;
+ int res12 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+ PyObject * obj7 = 0 ;
+ PyObject * obj8 = 0 ;
+ PyObject * obj9 = 0 ;
+ PyObject * obj10 = 0 ;
+ PyObject * obj11 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOOOOOOO:export_circfold_arrays_par",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6,&obj7,&obj8,&obj9,&obj10,&obj11)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "export_circfold_arrays_par" "', argument " "1"" of type '" "int *""'");
+ }
+ arg1 = (int *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "export_circfold_arrays_par" "', argument " "2"" of type '" "int *""'");
+ }
+ arg2 = (int *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "export_circfold_arrays_par" "', argument " "3"" of type '" "int *""'");
+ }
+ arg3 = (int *)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "export_circfold_arrays_par" "', argument " "4"" of type '" "int *""'");
+ }
+ arg4 = (int *)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "export_circfold_arrays_par" "', argument " "5"" of type '" "int **""'");
+ }
+ arg5 = (int **)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "export_circfold_arrays_par" "', argument " "6"" of type '" "int **""'");
+ }
+ arg6 = (int **)(argp6);
+ res7 = SWIG_ConvertPtr(obj6, &argp7,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res7)) {
+ SWIG_exception_fail(SWIG_ArgError(res7), "in method '" "export_circfold_arrays_par" "', argument " "7"" of type '" "int **""'");
+ }
+ arg7 = (int **)(argp7);
+ res8 = SWIG_ConvertPtr(obj7, &argp8,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res8)) {
+ SWIG_exception_fail(SWIG_ArgError(res8), "in method '" "export_circfold_arrays_par" "', argument " "8"" of type '" "int **""'");
+ }
+ arg8 = (int **)(argp8);
+ res9 = SWIG_ConvertPtr(obj8, &argp9,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res9)) {
+ SWIG_exception_fail(SWIG_ArgError(res9), "in method '" "export_circfold_arrays_par" "', argument " "9"" of type '" "int **""'");
+ }
+ arg9 = (int **)(argp9);
+ res10 = SWIG_ConvertPtr(obj9, &argp10,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res10)) {
+ SWIG_exception_fail(SWIG_ArgError(res10), "in method '" "export_circfold_arrays_par" "', argument " "10"" of type '" "int **""'");
+ }
+ arg10 = (int **)(argp10);
+ res11 = SWIG_ConvertPtr(obj10, &argp11,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res11)) {
+ SWIG_exception_fail(SWIG_ArgError(res11), "in method '" "export_circfold_arrays_par" "', argument " "11"" of type '" "char **""'");
+ }
+ arg11 = (char **)(argp11);
+ res12 = SWIG_ConvertPtr(obj11, &argp12,SWIGTYPE_p_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res12)) {
+ SWIG_exception_fail(SWIG_ArgError(res12), "in method '" "export_circfold_arrays_par" "', argument " "12"" of type '" "paramT **""'");
+ }
+ arg12 = (paramT **)(argp12);
+ export_circfold_arrays_par(arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9,arg10,arg11,arg12);
+ resultobj = SWIG_Py_Void();
+ {
+ free(arg11);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg11);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_assign_plist_from_db(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ plist **arg1 = (plist **) 0 ;
+ char *arg2 = (char *) 0 ;
+ float arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ float val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:assign_plist_from_db",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "assign_plist_from_db" "', argument " "1"" of type '" "plist **""'");
+ }
+ arg1 = (plist **)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "assign_plist_from_db" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_float(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "assign_plist_from_db" "', argument " "3"" of type '" "float""'");
+ }
+ arg3 = (float)(val3);
+ assign_plist_from_db(arg1,(char const *)arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_LoopEnergy(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int arg2 ;
+ int arg3 ;
+ int arg4 ;
+ int arg5 ;
+ int arg6 ;
+ int arg7 ;
+ int arg8 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ int val5 ;
+ int ecode5 = 0 ;
+ int val6 ;
+ int ecode6 = 0 ;
+ int val7 ;
+ int ecode7 = 0 ;
+ int val8 ;
+ int ecode8 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+ PyObject * obj7 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOOO:LoopEnergy",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6,&obj7)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "LoopEnergy" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "LoopEnergy" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "LoopEnergy" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "LoopEnergy" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ ecode5 = SWIG_AsVal_int(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "LoopEnergy" "', argument " "5"" of type '" "int""'");
+ }
+ arg5 = (int)(val5);
+ ecode6 = SWIG_AsVal_int(obj5, &val6);
+ if (!SWIG_IsOK(ecode6)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode6), "in method '" "LoopEnergy" "', argument " "6"" of type '" "int""'");
+ }
+ arg6 = (int)(val6);
+ ecode7 = SWIG_AsVal_int(obj6, &val7);
+ if (!SWIG_IsOK(ecode7)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode7), "in method '" "LoopEnergy" "', argument " "7"" of type '" "int""'");
+ }
+ arg7 = (int)(val7);
+ ecode8 = SWIG_AsVal_int(obj7, &val8);
+ if (!SWIG_IsOK(ecode8)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode8), "in method '" "LoopEnergy" "', argument " "8"" of type '" "int""'");
+ }
+ arg8 = (int)(val8);
+ result = (int)LoopEnergy(arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_HairpinE(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int arg2 ;
+ int arg3 ;
+ int arg4 ;
+ char *arg5 = (char *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ int res5 ;
+ char *buf5 = 0 ;
+ int alloc5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:HairpinE",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "HairpinE" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "HairpinE" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "HairpinE" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "HairpinE" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ res5 = SWIG_AsCharPtrAndSize(obj4, &buf5, NULL, &alloc5);
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "HairpinE" "', argument " "5"" of type '" "char const *""'");
+ }
+ arg5 = (char *)(buf5);
+ result = (int)HairpinE(arg1,arg2,arg3,arg4,(char const *)arg5);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return resultobj;
+fail:
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_initialize_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:initialize_fold",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "initialize_fold" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ initialize_fold(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_struct(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:energy_of_struct",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_struct" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_struct" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (float)energy_of_struct((char const *)arg1,(char const *)arg2);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_struct_pt(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ short *arg2 = (short *) 0 ;
+ short *arg3 = (short *) 0 ;
+ short *arg4 = (short *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:energy_of_struct_pt",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_struct_pt" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_struct_pt" "', argument " "2"" of type '" "short *""'");
+ }
+ arg2 = (short *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "energy_of_struct_pt" "', argument " "3"" of type '" "short *""'");
+ }
+ arg3 = (short *)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "energy_of_struct_pt" "', argument " "4"" of type '" "short *""'");
+ }
+ arg4 = (short *)(argp4);
+ result = (int)energy_of_struct_pt((char const *)arg1,arg2,arg3,arg4);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_circ_struct(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:energy_of_circ_struct",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_circ_struct" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_circ_struct" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (float)energy_of_circ_struct((char const *)arg1,(char const *)arg2);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_cofold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) NULL ;
+ float *arg3 = (float *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ float temp3 ;
+ int res3 = SWIG_TMPOBJ ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ arg3 = &temp3;
+ if (!PyArg_ParseTuple(args,(char *)"O|O:cofold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "cofold" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ if (obj1) {
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "cofold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ }
+ result = (char *)my_cofold(arg1,arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (SWIG_IsTmpObj(res3)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg3)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res3) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg3), SWIGTYPE_p_float, new_flags));
+ }
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_cofold_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ paramT *arg3 = (paramT *) 0 ;
+ int arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:cofold_par",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "cofold_par" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "cofold_par" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "cofold_par" "', argument " "3"" of type '" "paramT *""'");
+ }
+ arg3 = (paramT *)(argp3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "cofold_par" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (float)cofold_par((char const *)arg1,arg2,arg3,arg4);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_co_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":free_co_arrays")) SWIG_fail;
+ free_co_arrays();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_cofold_params(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":update_cofold_params")) SWIG_fail;
+ update_cofold_params();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_cofold_params_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ paramT *arg1 = (paramT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:update_cofold_params_par",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "update_cofold_params_par" "', argument " "1"" of type '" "paramT *""'");
+ }
+ arg1 = (paramT *)(argp1);
+ update_cofold_params_par(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_cofold_arrays_gq(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int **arg1 = (int **) 0 ;
+ int **arg2 = (int **) 0 ;
+ int **arg3 = (int **) 0 ;
+ int **arg4 = (int **) 0 ;
+ int **arg5 = (int **) 0 ;
+ int **arg6 = (int **) 0 ;
+ int **arg7 = (int **) 0 ;
+ char **arg8 = (char **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ void *argp7 = 0 ;
+ int res7 = 0 ;
+ void *argp8 = 0 ;
+ int res8 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+ PyObject * obj7 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOOO:export_cofold_arrays_gq",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6,&obj7)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "export_cofold_arrays_gq" "', argument " "1"" of type '" "int **""'");
+ }
+ arg1 = (int **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "export_cofold_arrays_gq" "', argument " "2"" of type '" "int **""'");
+ }
+ arg2 = (int **)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "export_cofold_arrays_gq" "', argument " "3"" of type '" "int **""'");
+ }
+ arg3 = (int **)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "export_cofold_arrays_gq" "', argument " "4"" of type '" "int **""'");
+ }
+ arg4 = (int **)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "export_cofold_arrays_gq" "', argument " "5"" of type '" "int **""'");
+ }
+ arg5 = (int **)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "export_cofold_arrays_gq" "', argument " "6"" of type '" "int **""'");
+ }
+ arg6 = (int **)(argp6);
+ res7 = SWIG_ConvertPtr(obj6, &argp7,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res7)) {
+ SWIG_exception_fail(SWIG_ArgError(res7), "in method '" "export_cofold_arrays_gq" "', argument " "7"" of type '" "int **""'");
+ }
+ arg7 = (int **)(argp7);
+ res8 = SWIG_ConvertPtr(obj7, &argp8,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res8)) {
+ SWIG_exception_fail(SWIG_ArgError(res8), "in method '" "export_cofold_arrays_gq" "', argument " "8"" of type '" "char **""'");
+ }
+ arg8 = (char **)(argp8);
+ export_cofold_arrays_gq(arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8);
+ resultobj = SWIG_Py_Void();
+ {
+ free(arg8);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg8);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_cofold_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int **arg1 = (int **) 0 ;
+ int **arg2 = (int **) 0 ;
+ int **arg3 = (int **) 0 ;
+ int **arg4 = (int **) 0 ;
+ int **arg5 = (int **) 0 ;
+ int **arg6 = (int **) 0 ;
+ char **arg7 = (char **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ void *argp7 = 0 ;
+ int res7 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOO:export_cofold_arrays",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "export_cofold_arrays" "', argument " "1"" of type '" "int **""'");
+ }
+ arg1 = (int **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "export_cofold_arrays" "', argument " "2"" of type '" "int **""'");
+ }
+ arg2 = (int **)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "export_cofold_arrays" "', argument " "3"" of type '" "int **""'");
+ }
+ arg3 = (int **)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "export_cofold_arrays" "', argument " "4"" of type '" "int **""'");
+ }
+ arg4 = (int **)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "export_cofold_arrays" "', argument " "5"" of type '" "int **""'");
+ }
+ arg5 = (int **)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "export_cofold_arrays" "', argument " "6"" of type '" "int **""'");
+ }
+ arg6 = (int **)(argp6);
+ res7 = SWIG_ConvertPtr(obj6, &argp7,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res7)) {
+ SWIG_exception_fail(SWIG_ArgError(res7), "in method '" "export_cofold_arrays" "', argument " "7"" of type '" "char **""'");
+ }
+ arg7 = (char **)(argp7);
+ export_cofold_arrays(arg1,arg2,arg3,arg4,arg5,arg6,arg7);
+ resultobj = SWIG_Py_Void();
+ {
+ free(arg7);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg7);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_zukersubopt(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ SOLUTION *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:zukersubopt",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "zukersubopt" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (SOLUTION *)zukersubopt((char const *)arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_SOLUTION, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_zukersubopt_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ paramT *arg2 = (paramT *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ SOLUTION *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:zukersubopt_par",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "zukersubopt_par" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "zukersubopt_par" "', argument " "2"" of type '" "paramT *""'");
+ }
+ arg2 = (paramT *)(argp2);
+ result = (SOLUTION *)zukersubopt_par((char const *)arg1,arg2);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_SOLUTION, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_monomere_mfes(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ float *arg2 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:get_monomere_mfes",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "get_monomere_mfes" "', argument " "1"" of type '" "float *""'");
+ }
+ arg1 = (float *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "get_monomere_mfes" "', argument " "2"" of type '" "float *""'");
+ }
+ arg2 = (float *)(argp2);
+ get_monomere_mfes(arg1,arg2);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_initialize_cofold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:initialize_cofold",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "initialize_cofold" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ initialize_cofold(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_pf_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) NULL ;
+ float *arg3 = (float *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ float temp3 ;
+ int res3 = SWIG_TMPOBJ ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ arg3 = &temp3;
+ if (!PyArg_ParseTuple(args,(char *)"O|O:pf_fold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "pf_fold" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ if (obj1) {
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "pf_fold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ }
+ result = (char *)my_pf_fold(arg1,arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (SWIG_IsTmpObj(res3)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg3)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res3) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg3), SWIGTYPE_p_float, new_flags));
+ }
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_st_back_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""st_back""' of type '""int""'");
+ }
+ st_back = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_st_back_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(st_back));
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_pf_fold_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ pf_paramT *arg3 = (pf_paramT *) 0 ;
+ int arg4 ;
+ int arg5 ;
+ int arg6 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ int val5 ;
+ int ecode5 = 0 ;
+ int val6 ;
+ int ecode6 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOO:pf_fold_par",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "pf_fold_par" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "pf_fold_par" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_pf_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "pf_fold_par" "', argument " "3"" of type '" "pf_paramT *""'");
+ }
+ arg3 = (pf_paramT *)(argp3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "pf_fold_par" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ ecode5 = SWIG_AsVal_int(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "pf_fold_par" "', argument " "5"" of type '" "int""'");
+ }
+ arg5 = (int)(val5);
+ ecode6 = SWIG_AsVal_int(obj5, &val6);
+ if (!SWIG_IsOK(ecode6)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode6), "in method '" "pf_fold_par" "', argument " "6"" of type '" "int""'");
+ }
+ arg6 = (int)(val6);
+ result = (float)pf_fold_par((char const *)arg1,arg2,arg3,arg4,arg5,arg6);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_pf_circ_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:pf_circ_fold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "pf_circ_fold" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "pf_circ_fold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (float)pf_circ_fold((char const *)arg1,arg2);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_pbacktrack(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:pbacktrack",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "pbacktrack" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)pbacktrack(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_pbacktrack_circ(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:pbacktrack_circ",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "pbacktrack_circ" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)pbacktrack_circ(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_pf_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":free_pf_arrays")) SWIG_fail;
+ free_pf_arrays();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_pf_params(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:update_pf_params",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "update_pf_params" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ update_pf_params(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_pf_params_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ pf_paramT *arg2 = (pf_paramT *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:update_pf_params_par",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "update_pf_params_par" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_pf_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "update_pf_params_par" "', argument " "2"" of type '" "pf_paramT *""'");
+ }
+ arg2 = (pf_paramT *)(argp2);
+ update_pf_params_par(arg1,arg2);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_bppm(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":export_bppm")) SWIG_fail;
+ result = (double *)export_bppm();
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_double, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_assign_plist_from_pr(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ plist **arg1 = (plist **) 0 ;
+ double *arg2 = (double *) 0 ;
+ int arg3 ;
+ double arg4 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ double val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:assign_plist_from_pr",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "assign_plist_from_pr" "', argument " "1"" of type '" "plist **""'");
+ }
+ arg1 = (plist **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "assign_plist_from_pr" "', argument " "2"" of type '" "double *""'");
+ }
+ arg2 = (double *)(argp2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "assign_plist_from_pr" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ ecode4 = SWIG_AsVal_double(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "assign_plist_from_pr" "', argument " "4"" of type '" "double""'");
+ }
+ arg4 = (double)(val4);
+ assign_plist_from_pr(arg1,arg2,arg3,arg4);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_assign_plist_gquad_from_pr(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ plist **arg1 = (plist **) 0 ;
+ int arg2 ;
+ double arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ double val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:assign_plist_gquad_from_pr",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "assign_plist_gquad_from_pr" "', argument " "1"" of type '" "plist **""'");
+ }
+ arg1 = (plist **)(argp1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "assign_plist_gquad_from_pr" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ ecode3 = SWIG_AsVal_double(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "assign_plist_gquad_from_pr" "', argument " "3"" of type '" "double""'");
+ }
+ arg3 = (double)(val3);
+ assign_plist_gquad_from_pr(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_centroid_struct_gquad_pr(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ double *arg2 = (double *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:get_centroid_struct_gquad_pr",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_centroid_struct_gquad_pr" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "get_centroid_struct_gquad_pr" "', argument " "2"" of type '" "double *""'");
+ }
+ arg2 = (double *)(argp2);
+ result = (char *)get_centroid_struct_gquad_pr(arg1,arg2);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_pf_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short **arg1 = (short **) 0 ;
+ short **arg2 = (short **) 0 ;
+ char **arg3 = (char **) 0 ;
+ double **arg4 = (double **) 0 ;
+ double **arg5 = (double **) 0 ;
+ double **arg6 = (double **) 0 ;
+ double **arg7 = (double **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ void *argp7 = 0 ;
+ int res7 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOO:get_pf_arrays",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "get_pf_arrays" "', argument " "1"" of type '" "short **""'");
+ }
+ arg1 = (short **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "get_pf_arrays" "', argument " "2"" of type '" "short **""'");
+ }
+ arg2 = (short **)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "get_pf_arrays" "', argument " "3"" of type '" "char **""'");
+ }
+ arg3 = (char **)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "get_pf_arrays" "', argument " "4"" of type '" "double **""'");
+ }
+ arg4 = (double **)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "get_pf_arrays" "', argument " "5"" of type '" "double **""'");
+ }
+ arg5 = (double **)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "get_pf_arrays" "', argument " "6"" of type '" "double **""'");
+ }
+ arg6 = (double **)(argp6);
+ res7 = SWIG_ConvertPtr(obj6, &argp7,SWIGTYPE_p_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res7)) {
+ SWIG_exception_fail(SWIG_ArgError(res7), "in method '" "get_pf_arrays" "', argument " "7"" of type '" "double **""'");
+ }
+ arg7 = (double **)(argp7);
+ result = (int)get_pf_arrays(arg1,arg2,arg3,arg4,arg5,arg6,arg7);
+ resultobj = SWIG_From_int((int)(result));
+ {
+ free(arg3);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg3);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_subseq_F(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int arg2 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:get_subseq_F",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_subseq_F" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "get_subseq_F" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ result = (double)get_subseq_F(arg1,arg2);
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_centroid_struct_pl(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ double *arg2 = (double *) 0 ;
+ plist *arg3 = (plist *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:get_centroid_struct_pl",&obj0,&obj1,&obj2)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_centroid_struct_pl" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "get_centroid_struct_pl" "', argument " "2"" of type '" "double *""'");
+ }
+ arg2 = (double *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "get_centroid_struct_pl" "', argument " "3"" of type '" "plist *""'");
+ }
+ arg3 = (plist *)(argp3);
+ result = (char *)get_centroid_struct_pl(arg1,arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_centroid_struct_pr(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ double *arg2 = (double *) 0 ;
+ double *arg3 = (double *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:get_centroid_struct_pr",&obj0,&obj1,&obj2)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_centroid_struct_pr" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "get_centroid_struct_pr" "', argument " "2"" of type '" "double *""'");
+ }
+ arg2 = (double *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "get_centroid_struct_pr" "', argument " "3"" of type '" "double *""'");
+ }
+ arg3 = (double *)(argp3);
+ result = (char *)get_centroid_struct_pr(arg1,arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_mean_bp_distance(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:mean_bp_distance",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "mean_bp_distance" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ result = (double)mean_bp_distance(arg1);
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_mean_bp_distance_pr(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ double *arg2 = (double *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:mean_bp_distance_pr",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "mean_bp_distance_pr" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "mean_bp_distance_pr" "', argument " "2"" of type '" "double *""'");
+ }
+ arg2 = (double *)(argp2);
+ result = (double)mean_bp_distance_pr(arg1,arg2);
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_bppm_to_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ double *arg2 = (double *) 0 ;
+ unsigned int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ unsigned int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:bppm_to_structure",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "bppm_to_structure" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "bppm_to_structure" "', argument " "2"" of type '" "double *""'");
+ }
+ arg2 = (double *)(argp2);
+ ecode3 = SWIG_AsVal_unsigned_SS_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "bppm_to_structure" "', argument " "3"" of type '" "unsigned int""'");
+ }
+ arg3 = (unsigned int)(val3);
+ bppm_to_structure(arg1,arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_stackProb(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double arg1 ;
+ double val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ plist *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:stackProb",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_double(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "stackProb" "', argument " "1"" of type '" "double""'");
+ }
+ arg1 = (double)(val1);
+ result = (plist *)stackProb(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_plist, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_bppm_symbol(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:bppm_symbol",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "bppm_symbol" "', argument " "1"" of type '" "float const *""'");
+ }
+ arg1 = (float *)(argp1);
+ result = (char)bppm_symbol((float const *)arg1);
+ resultobj = SWIG_From_char((char)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_init_pf_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:init_pf_fold",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "init_pf_fold" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ init_pf_fold(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_centroid(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ double *arg2 = (double *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:centroid",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "centroid" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "centroid" "', argument " "2"" of type '" "double *""'");
+ }
+ arg2 = (double *)(argp2);
+ result = (char *)centroid(arg1,arg2);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_mean_bp_dist(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:mean_bp_dist",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "mean_bp_dist" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ result = (double)mean_bp_dist(arg1);
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_expLoopEnergy(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int arg2 ;
+ int arg3 ;
+ int arg4 ;
+ short arg5 ;
+ short arg6 ;
+ short arg7 ;
+ short arg8 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ short val5 ;
+ int ecode5 = 0 ;
+ short val6 ;
+ int ecode6 = 0 ;
+ short val7 ;
+ int ecode7 = 0 ;
+ short val8 ;
+ int ecode8 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+ PyObject * obj7 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOOO:expLoopEnergy",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6,&obj7)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "expLoopEnergy" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "expLoopEnergy" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "expLoopEnergy" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "expLoopEnergy" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ ecode5 = SWIG_AsVal_short(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "expLoopEnergy" "', argument " "5"" of type '" "short""'");
+ }
+ arg5 = (short)(val5);
+ ecode6 = SWIG_AsVal_short(obj5, &val6);
+ if (!SWIG_IsOK(ecode6)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode6), "in method '" "expLoopEnergy" "', argument " "6"" of type '" "short""'");
+ }
+ arg6 = (short)(val6);
+ ecode7 = SWIG_AsVal_short(obj6, &val7);
+ if (!SWIG_IsOK(ecode7)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode7), "in method '" "expLoopEnergy" "', argument " "7"" of type '" "short""'");
+ }
+ arg7 = (short)(val7);
+ ecode8 = SWIG_AsVal_short(obj7, &val8);
+ if (!SWIG_IsOK(ecode8)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode8), "in method '" "expLoopEnergy" "', argument " "8"" of type '" "short""'");
+ }
+ arg8 = (short)(val8);
+ result = (double)expLoopEnergy(arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8);
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_expHairpinEnergy(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int arg2 ;
+ short arg3 ;
+ short arg4 ;
+ char *arg5 = (char *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ short val3 ;
+ int ecode3 = 0 ;
+ short val4 ;
+ int ecode4 = 0 ;
+ int res5 ;
+ char *buf5 = 0 ;
+ int alloc5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:expHairpinEnergy",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "expHairpinEnergy" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "expHairpinEnergy" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ ecode3 = SWIG_AsVal_short(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "expHairpinEnergy" "', argument " "3"" of type '" "short""'");
+ }
+ arg3 = (short)(val3);
+ ecode4 = SWIG_AsVal_short(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "expHairpinEnergy" "', argument " "4"" of type '" "short""'");
+ }
+ arg4 = (short)(val4);
+ res5 = SWIG_AsCharPtrAndSize(obj4, &buf5, NULL, &alloc5);
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "expHairpinEnergy" "', argument " "5"" of type '" "char const *""'");
+ }
+ arg5 = (char *)(buf5);
+ result = (double)expHairpinEnergy(arg1,arg2,arg3,arg4,(char const *)arg5);
+ resultobj = SWIG_From_double((double)(result));
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return resultobj;
+fail:
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_co_pf_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) NULL ;
+ float *arg3 = (float *) 0 ;
+ float *arg4 = (float *) 0 ;
+ float *arg5 = (float *) 0 ;
+ float *arg6 = (float *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ float temp3 ;
+ int res3 = SWIG_TMPOBJ ;
+ float temp4 ;
+ int res4 = SWIG_TMPOBJ ;
+ float temp5 ;
+ int res5 = SWIG_TMPOBJ ;
+ float temp6 ;
+ int res6 = SWIG_TMPOBJ ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ arg3 = &temp3;
+ arg4 = &temp4;
+ arg5 = &temp5;
+ arg6 = &temp6;
+ if (!PyArg_ParseTuple(args,(char *)"O|O:co_pf_fold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "co_pf_fold" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ if (obj1) {
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "co_pf_fold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ }
+ result = (char *)my_co_pf_fold(arg1,arg2,arg3,arg4,arg5,arg6);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (SWIG_IsTmpObj(res3)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg3)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res3) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg3), SWIGTYPE_p_float, new_flags));
+ }
+ if (SWIG_IsTmpObj(res4)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg4)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res4) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg4), SWIGTYPE_p_float, new_flags));
+ }
+ if (SWIG_IsTmpObj(res5)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg5)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res5) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg5), SWIGTYPE_p_float, new_flags));
+ }
+ if (SWIG_IsTmpObj(res6)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg6)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res6) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg6), SWIGTYPE_p_float, new_flags));
+ }
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_mirnatog_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""mirnatog""' of type '""int""'");
+ }
+ mirnatog = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_mirnatog_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(mirnatog));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_F_monomer_set(PyObject *_val) {
+ {
+ double *inp = 0;
+ int res = SWIG_ConvertPtr(_val, SWIG_as_voidptrptr(&inp), SWIGTYPE_p_double, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""F_monomer""' of type '""double [2]""'");
+ } else if (inp) {
+ size_t ii = 0;
+ for (; ii < (size_t)2; ++ii) F_monomer[ii] = inp[ii];
+ } else {
+ SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in variable '""F_monomer""' of type '""double [2]""'");
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_F_monomer_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(F_monomer), SWIGTYPE_p_double, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_co_pf_fold_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ pf_paramT *arg3 = (pf_paramT *) 0 ;
+ int arg4 ;
+ int arg5 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ int val5 ;
+ int ecode5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ cofoldF result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:co_pf_fold_par",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "co_pf_fold_par" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "co_pf_fold_par" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_pf_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "co_pf_fold_par" "', argument " "3"" of type '" "pf_paramT *""'");
+ }
+ arg3 = (pf_paramT *)(argp3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "co_pf_fold_par" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ ecode5 = SWIG_AsVal_int(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "co_pf_fold_par" "', argument " "5"" of type '" "int""'");
+ }
+ arg5 = (int)(val5);
+ result = co_pf_fold_par(arg1,arg2,arg3,arg4,arg5);
+ resultobj = SWIG_NewPointerObj((cofoldF *)memcpy((cofoldF *)malloc(sizeof(cofoldF)),&result,sizeof(cofoldF)), SWIGTYPE_p_cofoldF, SWIG_POINTER_OWN | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_co_bppm(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":export_co_bppm")) SWIG_fail;
+ result = (double *)export_co_bppm();
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_double, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_co_pf_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":free_co_pf_arrays")) SWIG_fail;
+ free_co_pf_arrays();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_co_pf_params(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:update_co_pf_params",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "update_co_pf_params" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ update_co_pf_params(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_co_pf_params_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ pf_paramT *arg2 = (pf_paramT *) 0 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:update_co_pf_params_par",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "update_co_pf_params_par" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_pf_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "update_co_pf_params_par" "', argument " "2"" of type '" "pf_paramT *""'");
+ }
+ arg2 = (pf_paramT *)(argp2);
+ update_co_pf_params_par(arg1,arg2);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_concentrations__SWIG_0(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double arg1 ;
+ double arg2 ;
+ double arg3 ;
+ double arg4 ;
+ double arg5 ;
+ double *arg6 = (double *) 0 ;
+ double val1 ;
+ int ecode1 = 0 ;
+ double val2 ;
+ int ecode2 = 0 ;
+ double val3 ;
+ int ecode3 = 0 ;
+ double val4 ;
+ int ecode4 = 0 ;
+ double val5 ;
+ int ecode5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ ConcEnt *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOO:get_concentrations",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5)) SWIG_fail;
+ ecode1 = SWIG_AsVal_double(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_concentrations" "', argument " "1"" of type '" "double""'");
+ }
+ arg1 = (double)(val1);
+ ecode2 = SWIG_AsVal_double(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "get_concentrations" "', argument " "2"" of type '" "double""'");
+ }
+ arg2 = (double)(val2);
+ ecode3 = SWIG_AsVal_double(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "get_concentrations" "', argument " "3"" of type '" "double""'");
+ }
+ arg3 = (double)(val3);
+ ecode4 = SWIG_AsVal_double(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "get_concentrations" "', argument " "4"" of type '" "double""'");
+ }
+ arg4 = (double)(val4);
+ ecode5 = SWIG_AsVal_double(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "get_concentrations" "', argument " "5"" of type '" "double""'");
+ }
+ arg5 = (double)(val5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "get_concentrations" "', argument " "6"" of type '" "double *""'");
+ }
+ arg6 = (double *)(argp6);
+ result = (ConcEnt *)get_concentrations(arg1,arg2,arg3,arg4,arg5,arg6);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_ConcEnt, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_concentrations__SWIG_1(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double arg1 ;
+ double arg2 ;
+ double arg3 ;
+ double arg4 ;
+ double arg5 ;
+ double arg6 ;
+ double arg7 ;
+ double *arg8 = (double *) 0 ;
+ double *arg9 = (double *) 0 ;
+ double *arg10 = (double *) 0 ;
+ double *arg11 = (double *) 0 ;
+ double *arg12 = (double *) 0 ;
+ double val1 ;
+ int ecode1 = 0 ;
+ double val2 ;
+ int ecode2 = 0 ;
+ double val3 ;
+ int ecode3 = 0 ;
+ double val4 ;
+ int ecode4 = 0 ;
+ double val5 ;
+ int ecode5 = 0 ;
+ double val6 ;
+ int ecode6 = 0 ;
+ double val7 ;
+ int ecode7 = 0 ;
+ double temp8 ;
+ int res8 = SWIG_TMPOBJ ;
+ double temp9 ;
+ int res9 = SWIG_TMPOBJ ;
+ double temp10 ;
+ int res10 = SWIG_TMPOBJ ;
+ double temp11 ;
+ int res11 = SWIG_TMPOBJ ;
+ double temp12 ;
+ int res12 = SWIG_TMPOBJ ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+
+ arg8 = &temp8;
+ arg9 = &temp9;
+ arg10 = &temp10;
+ arg11 = &temp11;
+ arg12 = &temp12;
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOO:get_concentrations",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6)) SWIG_fail;
+ ecode1 = SWIG_AsVal_double(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_concentrations" "', argument " "1"" of type '" "double""'");
+ }
+ arg1 = (double)(val1);
+ ecode2 = SWIG_AsVal_double(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "get_concentrations" "', argument " "2"" of type '" "double""'");
+ }
+ arg2 = (double)(val2);
+ ecode3 = SWIG_AsVal_double(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "get_concentrations" "', argument " "3"" of type '" "double""'");
+ }
+ arg3 = (double)(val3);
+ ecode4 = SWIG_AsVal_double(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "get_concentrations" "', argument " "4"" of type '" "double""'");
+ }
+ arg4 = (double)(val4);
+ ecode5 = SWIG_AsVal_double(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "get_concentrations" "', argument " "5"" of type '" "double""'");
+ }
+ arg5 = (double)(val5);
+ ecode6 = SWIG_AsVal_double(obj5, &val6);
+ if (!SWIG_IsOK(ecode6)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode6), "in method '" "get_concentrations" "', argument " "6"" of type '" "double""'");
+ }
+ arg6 = (double)(val6);
+ ecode7 = SWIG_AsVal_double(obj6, &val7);
+ if (!SWIG_IsOK(ecode7)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode7), "in method '" "get_concentrations" "', argument " "7"" of type '" "double""'");
+ }
+ arg7 = (double)(val7);
+ my_get_concentrations(arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9,arg10,arg11,arg12);
+ resultobj = SWIG_Py_Void();
+ if (SWIG_IsTmpObj(res8)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_double((*arg8)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res8) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg8), SWIGTYPE_p_double, new_flags));
+ }
+ if (SWIG_IsTmpObj(res9)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_double((*arg9)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res9) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg9), SWIGTYPE_p_double, new_flags));
+ }
+ if (SWIG_IsTmpObj(res10)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_double((*arg10)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res10) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg10), SWIGTYPE_p_double, new_flags));
+ }
+ if (SWIG_IsTmpObj(res11)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_double((*arg11)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res11) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg11), SWIGTYPE_p_double, new_flags));
+ }
+ if (SWIG_IsTmpObj(res12)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_double((*arg12)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res12) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg12), SWIGTYPE_p_double, new_flags));
+ }
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_concentrations(PyObject *self, PyObject *args) {
+ int argc;
+ PyObject *argv[8];
+ int ii;
+
+ if (!PyTuple_Check(args)) SWIG_fail;
+ argc = args ? (int)PyObject_Length(args) : 0;
+ for (ii = 0; (ii < 7) && (ii < argc); ii++) {
+ argv[ii] = PyTuple_GET_ITEM(args,ii);
+ }
+ if (argc == 6) {
+ int _v;
+ {
+ int res = SWIG_AsVal_double(argv[0], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[1], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[2], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[3], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[4], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ void *vptr = 0;
+ int res = SWIG_ConvertPtr(argv[5], &vptr, SWIGTYPE_p_double, 0);
+ _v = SWIG_CheckState(res);
+ if (_v) {
+ return _wrap_get_concentrations__SWIG_0(self, args);
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ if (argc == 7) {
+ int _v;
+ {
+ int res = SWIG_AsVal_double(argv[0], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[1], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[2], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[3], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[4], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[5], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ {
+ int res = SWIG_AsVal_double(argv[6], NULL);
+ _v = SWIG_CheckState(res);
+ }
+ if (_v) {
+ return _wrap_get_concentrations__SWIG_1(self, args);
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+
+fail:
+ SWIG_SetErrorMsg(PyExc_NotImplementedError,"Wrong number or type of arguments for overloaded function 'get_concentrations'.\n"
+ " Possible C/C++ prototypes are:\n"
+ " get_concentrations(double,double,double,double,double,double *)\n"
+ " my_get_concentrations(double,double,double,double,double,double,double,double *,double *,double *,double *,double *)\n");
+ return 0;
+}
+
+
+SWIGINTERN PyObject *_wrap_inverse_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ float *arg3 = (float *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ float temp3 ;
+ int res3 = SWIG_TMPOBJ ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ arg3 = &temp3;
+ if (!PyArg_ParseTuple(args,(char *)"OO:inverse_fold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "inverse_fold" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "inverse_fold" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (char *)my_inverse_fold(arg1,(char const *)arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (SWIG_IsTmpObj(res3)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg3)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res3) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg3), SWIGTYPE_p_float, new_flags));
+ }
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_inverse_pf_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ float *arg3 = (float *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ float temp3 ;
+ int res3 = SWIG_TMPOBJ ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ arg3 = &temp3;
+ if (!PyArg_ParseTuple(args,(char *)"OO:inverse_pf_fold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "inverse_pf_fold" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "inverse_pf_fold" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (char *)my_inverse_pf_fold(arg1,(char const *)arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (SWIG_IsTmpObj(res3)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg3)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res3) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg3), SWIGTYPE_p_float, new_flags));
+ }
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_symbolset_set(PyObject *_val) {
+ {
+ char *cptr = 0; size_t csize = 0; int alloc = SWIG_NEWOBJ;
+ int res = SWIG_AsCharPtrAndSize(_val, &cptr, &csize, &alloc);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""symbolset""' of type '""char *""'");
+ }
+ if (symbolset) free((char*)symbolset);
+ if (alloc == SWIG_NEWOBJ) {
+ symbolset = cptr;
+ } else {
+ symbolset = csize ? (char *)(char *)memcpy((char *)malloc((csize)*sizeof(char)), cptr, sizeof(char)*(csize)) : 0;
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_symbolset_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_FromCharPtr(symbolset);
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_final_cost_set(PyObject *_val) {
+ {
+ float val;
+ int res = SWIG_AsVal_float(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""final_cost""' of type '""float""'");
+ }
+ final_cost = (float)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_final_cost_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_float((float)(final_cost));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_give_up_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""give_up""' of type '""int""'");
+ }
+ give_up = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_give_up_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(give_up));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_inv_verbose_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""inv_verbose""' of type '""int""'");
+ }
+ inv_verbose = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_inv_verbose_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(inv_verbose));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_fold_constrained_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""fold_constrained""' of type '""int""'");
+ }
+ fold_constrained = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_fold_constrained_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(fold_constrained));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_noLonelyPairs_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""noLonelyPairs""' of type '""int""'");
+ }
+ noLonelyPairs = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_noLonelyPairs_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(noLonelyPairs));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_dangles_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""dangles""' of type '""int""'");
+ }
+ dangles = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_dangles_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(dangles));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_noGU_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""noGU""' of type '""int""'");
+ }
+ noGU = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_noGU_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(noGU));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_no_closingGU_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""no_closingGU""' of type '""int""'");
+ }
+ no_closingGU = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_no_closingGU_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(no_closingGU));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_tetra_loop_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""tetra_loop""' of type '""int""'");
+ }
+ tetra_loop = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_tetra_loop_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(tetra_loop));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_energy_set_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""energy_set""' of type '""int""'");
+ }
+ energy_set = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_energy_set_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(energy_set));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_circ_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""circ""' of type '""int""'");
+ }
+ circ = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_circ_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(circ));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_csv_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""csv""' of type '""int""'");
+ }
+ csv = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_csv_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(csv));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_oldAliEn_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""oldAliEn""' of type '""int""'");
+ }
+ oldAliEn = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_oldAliEn_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(oldAliEn));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_ribo_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""ribo""' of type '""int""'");
+ }
+ ribo = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_ribo_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(ribo));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_RibosumFile_set(PyObject *_val) {
+ {
+ char *cptr = 0; size_t csize = 0; int alloc = SWIG_NEWOBJ;
+ int res = SWIG_AsCharPtrAndSize(_val, &cptr, &csize, &alloc);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""RibosumFile""' of type '""char *""'");
+ }
+ if (RibosumFile) free((char*)RibosumFile);
+ if (alloc == SWIG_NEWOBJ) {
+ RibosumFile = cptr;
+ } else {
+ RibosumFile = csize ? (char *)(char *)memcpy((char *)malloc((csize)*sizeof(char)), cptr, sizeof(char)*(csize)) : 0;
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_RibosumFile_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_FromCharPtr(RibosumFile);
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_nonstandards_set(PyObject *_val) {
+ {
+ char *cptr = 0; size_t csize = 0; int alloc = SWIG_NEWOBJ;
+ int res = SWIG_AsCharPtrAndSize(_val, &cptr, &csize, &alloc);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""nonstandards""' of type '""char *""'");
+ }
+ if (nonstandards) free((char*)nonstandards);
+ if (alloc == SWIG_NEWOBJ) {
+ nonstandards = cptr;
+ } else {
+ nonstandards = csize ? (char *)(char *)memcpy((char *)malloc((csize)*sizeof(char)), cptr, sizeof(char)*(csize)) : 0;
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_nonstandards_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_FromCharPtr(nonstandards);
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_temperature_set(PyObject *_val) {
+ {
+ double val;
+ int res = SWIG_AsVal_double(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""temperature""' of type '""double""'");
+ }
+ temperature = (double)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_temperature_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_double((double)(temperature));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_james_rule_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""james_rule""' of type '""int""'");
+ }
+ james_rule = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_james_rule_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(james_rule));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_base_pair_set(PyObject *_val) {
+ {
+ void *argp = 0;
+ int res = SWIG_ConvertPtr(_val, &argp, SWIGTYPE_p_bondT, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""base_pair""' of type '""bondT *""'");
+ }
+ base_pair = (bondT *)(argp);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_base_pair_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(base_pair), SWIGTYPE_p_bondT, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_pr_set(PyObject *_val) {
+ {
+ void *argp = 0;
+ int res = SWIG_ConvertPtr(_val, &argp, SWIGTYPE_p_double, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""pr""' of type '""double *""'");
+ }
+ pr = (double *)(argp);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_pr_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(pr), SWIGTYPE_p_double, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_iindx_set(PyObject *_val) {
+ {
+ void *argp = 0;
+ int res = SWIG_ConvertPtr(_val, &argp, SWIGTYPE_p_int, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""iindx""' of type '""int *""'");
+ }
+ iindx = (int *)(argp);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_iindx_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(iindx), SWIGTYPE_p_int, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_pf_scale_set(PyObject *_val) {
+ {
+ double val;
+ int res = SWIG_AsVal_double(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""pf_scale""' of type '""double""'");
+ }
+ pf_scale = (double)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_pf_scale_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_double((double)(pf_scale));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_do_backtrack_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""do_backtrack""' of type '""int""'");
+ }
+ do_backtrack = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_do_backtrack_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(do_backtrack));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_backtrack_type_set(PyObject *_val) {
+ {
+ char val;
+ int res = SWIG_AsVal_char(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""backtrack_type""' of type '""char""'");
+ }
+ backtrack_type = (char)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_backtrack_type_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_char((char)(backtrack_type));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_gquad_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""gquad""' of type '""int""'");
+ }
+ gquad = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_gquad_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(gquad));
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_option_string(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":option_string")) SWIG_fail;
+ result = (char *)option_string();
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_set_model_details(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ model_detailsT *arg1 = (model_detailsT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:set_model_details",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_model_detailsT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "set_model_details" "', argument " "1"" of type '" "model_detailsT *""'");
+ }
+ arg1 = (model_detailsT *)(argp1);
+ set_model_details(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_cv_fact_set(PyObject *_val) {
+ {
+ double val;
+ int res = SWIG_AsVal_double(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""cv_fact""' of type '""double""'");
+ }
+ cv_fact = (double)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_cv_fact_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_double((double)(cv_fact));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_nc_fact_set(PyObject *_val) {
+ {
+ double val;
+ int res = SWIG_AsVal_double(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""nc_fact""' of type '""double""'");
+ }
+ nc_fact = (double)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_nc_fact_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_double((double)(nc_fact));
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_update_alifold_params(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":update_alifold_params")) SWIG_fail;
+ update_alifold_params();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_circalifold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char *arg2 = (char *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:circalifold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "circalifold" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "circalifold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (float)circalifold((char const **)arg1,arg2);
+ resultobj = SWIG_From_float((float)(result));
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_alifold_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":free_alifold_arrays")) SWIG_fail;
+ free_alifold_arrays();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_mpi(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 ;
+ int arg2 ;
+ int arg3 ;
+ int *arg4 = (int *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:get_mpi",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "get_mpi" "', argument " "1"" of type '" "char *[]""'");
+ }
+ arg1 = (char **)(argp1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "get_mpi" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "get_mpi" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "get_mpi" "', argument " "4"" of type '" "int *""'");
+ }
+ arg4 = (int *)(argp4);
+ result = (int)get_mpi(arg1,arg2,arg3,arg4);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_readribosum(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ float **result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:readribosum",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "readribosum" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (float **)readribosum(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_p_float, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_alistruct(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ float *arg4 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:energy_of_alistruct",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_alistruct" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_alistruct" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "energy_of_alistruct" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "energy_of_alistruct" "', argument " "4"" of type '" "float *""'");
+ }
+ arg4 = (float *)(argp4);
+ result = (float)energy_of_alistruct((char const **)arg1,(char const *)arg2,arg3,arg4);
+ resultobj = SWIG_From_float((float)(result));
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_energy_of_ali_gquad_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ float *arg4 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:energy_of_ali_gquad_structure",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "energy_of_ali_gquad_structure" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "energy_of_ali_gquad_structure" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "energy_of_ali_gquad_structure" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "energy_of_ali_gquad_structure" "', argument " "4"" of type '" "float *""'");
+ }
+ arg4 = (float *)(argp4);
+ result = (float)energy_of_ali_gquad_structure((char const **)arg1,(char const *)arg2,arg3,arg4);
+ resultobj = SWIG_From_float((float)(result));
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_encode_ali_sequence(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ short *arg2 = (short *) 0 ;
+ short *arg3 = (short *) 0 ;
+ short *arg4 = (short *) 0 ;
+ char *arg5 = (char *) 0 ;
+ unsigned short *arg6 = (unsigned short *) 0 ;
+ int arg7 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ int res5 ;
+ char *buf5 = 0 ;
+ int alloc5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ int val7 ;
+ int ecode7 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOO:encode_ali_sequence",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "encode_ali_sequence" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "encode_ali_sequence" "', argument " "2"" of type '" "short *""'");
+ }
+ arg2 = (short *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "encode_ali_sequence" "', argument " "3"" of type '" "short *""'");
+ }
+ arg3 = (short *)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "encode_ali_sequence" "', argument " "4"" of type '" "short *""'");
+ }
+ arg4 = (short *)(argp4);
+ res5 = SWIG_AsCharPtrAndSize(obj4, &buf5, NULL, &alloc5);
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "encode_ali_sequence" "', argument " "5"" of type '" "char *""'");
+ }
+ arg5 = (char *)(buf5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_unsigned_short, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "encode_ali_sequence" "', argument " "6"" of type '" "unsigned short *""'");
+ }
+ arg6 = (unsigned short *)(argp6);
+ ecode7 = SWIG_AsVal_int(obj6, &val7);
+ if (!SWIG_IsOK(ecode7)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode7), "in method '" "encode_ali_sequence" "', argument " "7"" of type '" "int""'");
+ }
+ arg7 = (int)(val7);
+ encode_ali_sequence((char const *)arg1,arg2,arg3,arg4,arg5,arg6,arg7);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_alloc_sequence_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ short ***arg2 = (short ***) 0 ;
+ short ***arg3 = (short ***) 0 ;
+ short ***arg4 = (short ***) 0 ;
+ unsigned short ***arg5 = (unsigned short ***) 0 ;
+ char ***arg6 = (char ***) 0 ;
+ int arg7 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ int val7 ;
+ int ecode7 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOO:alloc_sequence_arrays",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "alloc_sequence_arrays" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "alloc_sequence_arrays" "', argument " "2"" of type '" "short ***""'");
+ }
+ arg2 = (short ***)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "alloc_sequence_arrays" "', argument " "3"" of type '" "short ***""'");
+ }
+ arg3 = (short ***)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "alloc_sequence_arrays" "', argument " "4"" of type '" "short ***""'");
+ }
+ arg4 = (short ***)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_p_unsigned_short, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "alloc_sequence_arrays" "', argument " "5"" of type '" "unsigned short ***""'");
+ }
+ arg5 = (unsigned short ***)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "alloc_sequence_arrays" "', argument " "6"" of type '" "char ***""'");
+ }
+ arg6 = (char ***)(argp6);
+ ecode7 = SWIG_AsVal_int(obj6, &val7);
+ if (!SWIG_IsOK(ecode7)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode7), "in method '" "alloc_sequence_arrays" "', argument " "7"" of type '" "int""'");
+ }
+ arg7 = (int)(val7);
+ alloc_sequence_arrays((char const **)arg1,arg2,arg3,arg4,arg5,arg6,arg7);
+ resultobj = SWIG_Py_Void();
+ {
+ free(arg1);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_sequence_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ unsigned int arg1 ;
+ short ***arg2 = (short ***) 0 ;
+ short ***arg3 = (short ***) 0 ;
+ short ***arg4 = (short ***) 0 ;
+ unsigned short ***arg5 = (unsigned short ***) 0 ;
+ char ***arg6 = (char ***) 0 ;
+ unsigned int val1 ;
+ int ecode1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOO:free_sequence_arrays",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5)) SWIG_fail;
+ ecode1 = SWIG_AsVal_unsigned_SS_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "free_sequence_arrays" "', argument " "1"" of type '" "unsigned int""'");
+ }
+ arg1 = (unsigned int)(val1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "free_sequence_arrays" "', argument " "2"" of type '" "short ***""'");
+ }
+ arg2 = (short ***)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "free_sequence_arrays" "', argument " "3"" of type '" "short ***""'");
+ }
+ arg3 = (short ***)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "free_sequence_arrays" "', argument " "4"" of type '" "short ***""'");
+ }
+ arg4 = (short ***)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_p_unsigned_short, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "free_sequence_arrays" "', argument " "5"" of type '" "unsigned short ***""'");
+ }
+ arg5 = (unsigned short ***)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "free_sequence_arrays" "', argument " "6"" of type '" "char ***""'");
+ }
+ arg6 = (char ***)(argp6);
+ free_sequence_arrays(arg1,arg2,arg3,arg4,arg5,arg6);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_alipf_fold_par(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char *arg2 = (char *) 0 ;
+ plist **arg3 = (plist **) 0 ;
+ pf_paramT *arg4 = (pf_paramT *) 0 ;
+ int arg5 ;
+ int arg6 ;
+ int arg7 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ int val5 ;
+ int ecode5 = 0 ;
+ int val6 ;
+ int ecode6 = 0 ;
+ int val7 ;
+ int ecode7 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOO:alipf_fold_par",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "alipf_fold_par" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "alipf_fold_par" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "alipf_fold_par" "', argument " "3"" of type '" "plist **""'");
+ }
+ arg3 = (plist **)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_pf_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "alipf_fold_par" "', argument " "4"" of type '" "pf_paramT *""'");
+ }
+ arg4 = (pf_paramT *)(argp4);
+ ecode5 = SWIG_AsVal_int(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "alipf_fold_par" "', argument " "5"" of type '" "int""'");
+ }
+ arg5 = (int)(val5);
+ ecode6 = SWIG_AsVal_int(obj5, &val6);
+ if (!SWIG_IsOK(ecode6)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode6), "in method '" "alipf_fold_par" "', argument " "6"" of type '" "int""'");
+ }
+ arg6 = (int)(val6);
+ ecode7 = SWIG_AsVal_int(obj6, &val7);
+ if (!SWIG_IsOK(ecode7)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode7), "in method '" "alipf_fold_par" "', argument " "7"" of type '" "int""'");
+ }
+ arg7 = (int)(val7);
+ result = (float)alipf_fold_par((char const **)arg1,arg2,arg3,arg4,arg5,arg6,arg7);
+ resultobj = SWIG_From_float((float)(result));
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_alipf_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char *arg2 = (char *) 0 ;
+ plist **arg3 = (plist **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:alipf_fold",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "alipf_fold" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "alipf_fold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "alipf_fold" "', argument " "3"" of type '" "plist **""'");
+ }
+ arg3 = (plist **)(argp3);
+ result = (float)alipf_fold((char const **)arg1,arg2,arg3);
+ resultobj = SWIG_From_float((float)(result));
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_alipf_circ_fold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char *arg2 = (char *) 0 ;
+ plist **arg3 = (plist **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:alipf_circ_fold",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "alipf_circ_fold" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "alipf_circ_fold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "alipf_circ_fold" "', argument " "3"" of type '" "plist **""'");
+ }
+ arg3 = (plist **)(argp3);
+ result = (float)alipf_circ_fold((char const **)arg1,arg2,arg3);
+ resultobj = SWIG_From_float((float)(result));
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_export_ali_bppm(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":export_ali_bppm")) SWIG_fail;
+ result = (double *)export_ali_bppm();
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_double, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_alipf_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":free_alipf_arrays")) SWIG_fail;
+ free_alipf_arrays();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_alipbacktrack(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *arg1 = (double *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:alipbacktrack",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "alipbacktrack" "', argument " "1"" of type '" "double *""'");
+ }
+ arg1 = (double *)(argp1);
+ result = (char *)alipbacktrack(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_alipf_arrays(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short ***arg1 = (short ***) 0 ;
+ short ***arg2 = (short ***) 0 ;
+ short ***arg3 = (short ***) 0 ;
+ unsigned short ***arg4 = (unsigned short ***) 0 ;
+ char ***arg5 = (char ***) 0 ;
+ double **arg6 = (double **) 0 ;
+ double **arg7 = (double **) 0 ;
+ double **arg8 = (double **) 0 ;
+ double **arg9 = (double **) 0 ;
+ short **arg10 = (short **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ void *argp6 = 0 ;
+ int res6 = 0 ;
+ void *argp7 = 0 ;
+ int res7 = 0 ;
+ void *argp8 = 0 ;
+ int res8 = 0 ;
+ void *argp9 = 0 ;
+ int res9 = 0 ;
+ void *argp10 = 0 ;
+ int res10 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+ PyObject * obj6 = 0 ;
+ PyObject * obj7 = 0 ;
+ PyObject * obj8 = 0 ;
+ PyObject * obj9 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOOOOOO:get_alipf_arrays",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5,&obj6,&obj7,&obj8,&obj9)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "get_alipf_arrays" "', argument " "1"" of type '" "short ***""'");
+ }
+ arg1 = (short ***)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "get_alipf_arrays" "', argument " "2"" of type '" "short ***""'");
+ }
+ arg2 = (short ***)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "get_alipf_arrays" "', argument " "3"" of type '" "short ***""'");
+ }
+ arg3 = (short ***)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_p_unsigned_short, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "get_alipf_arrays" "', argument " "4"" of type '" "unsigned short ***""'");
+ }
+ arg4 = (unsigned short ***)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "get_alipf_arrays" "', argument " "5"" of type '" "char ***""'");
+ }
+ arg5 = (char ***)(argp5);
+ res6 = SWIG_ConvertPtr(obj5, &argp6,SWIGTYPE_p_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res6)) {
+ SWIG_exception_fail(SWIG_ArgError(res6), "in method '" "get_alipf_arrays" "', argument " "6"" of type '" "double **""'");
+ }
+ arg6 = (double **)(argp6);
+ res7 = SWIG_ConvertPtr(obj6, &argp7,SWIGTYPE_p_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res7)) {
+ SWIG_exception_fail(SWIG_ArgError(res7), "in method '" "get_alipf_arrays" "', argument " "7"" of type '" "double **""'");
+ }
+ arg7 = (double **)(argp7);
+ res8 = SWIG_ConvertPtr(obj7, &argp8,SWIGTYPE_p_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res8)) {
+ SWIG_exception_fail(SWIG_ArgError(res8), "in method '" "get_alipf_arrays" "', argument " "8"" of type '" "double **""'");
+ }
+ arg8 = (double **)(argp8);
+ res9 = SWIG_ConvertPtr(obj8, &argp9,SWIGTYPE_p_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res9)) {
+ SWIG_exception_fail(SWIG_ArgError(res9), "in method '" "get_alipf_arrays" "', argument " "9"" of type '" "double **""'");
+ }
+ arg9 = (double **)(argp9);
+ res10 = SWIG_ConvertPtr(obj9, &argp10,SWIGTYPE_p_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res10)) {
+ SWIG_exception_fail(SWIG_ArgError(res10), "in method '" "get_alipf_arrays" "', argument " "10"" of type '" "short **""'");
+ }
+ arg10 = (short **)(argp10);
+ result = (int)get_alipf_arrays(arg1,arg2,arg3,arg4,arg5,arg6,arg7,arg8,arg9,arg10);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_alifold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char *arg2 = (char *) NULL ;
+ float *arg3 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ float temp3 ;
+ int res3 = SWIG_TMPOBJ ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ arg3 = &temp3;
+ if (!PyArg_ParseTuple(args,(char *)"O|O:alifold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "alifold" "', argument " "1"" of type '" "char **""'");
+ }
+ arg1 = (char **)(argp1);
+ if (obj1) {
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "alifold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ }
+ result = (char *)my_alifold(arg1,arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (SWIG_IsTmpObj(res3)) {
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_From_float((*arg3)));
+ } else {
+ int new_flags = SWIG_IsNewObj(res3) ? (SWIG_POINTER_OWN | 0 ) : 0 ;
+ resultobj = SWIG_Python_AppendOutput(resultobj, SWIG_NewPointerObj((void*)(arg3), SWIGTYPE_p_float, new_flags));
+ }
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ free((char*)result);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_consensus(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:consensus",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "consensus" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ result = (char *)consensus((char const **)arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ {
+ free(arg1);
+ }
+ free((char*)result);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_consens_mis(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:consens_mis",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "consens_mis" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ result = (char *)consens_mis((char const **)arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ {
+ free(arg1);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_COORDINATE_X_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ COORDINATE *arg1 = (COORDINATE *) 0 ;
+ float arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ float val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:COORDINATE_X_set",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_COORDINATE, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "COORDINATE_X_set" "', argument " "1"" of type '" "COORDINATE *""'");
+ }
+ arg1 = (COORDINATE *)(argp1);
+ ecode2 = SWIG_AsVal_float(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "COORDINATE_X_set" "', argument " "2"" of type '" "float""'");
+ }
+ arg2 = (float)(val2);
+ if (arg1) (arg1)->X = arg2;
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_COORDINATE_X_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ COORDINATE *arg1 = (COORDINATE *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:COORDINATE_X_get",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_COORDINATE, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "COORDINATE_X_get" "', argument " "1"" of type '" "COORDINATE *""'");
+ }
+ arg1 = (COORDINATE *)(argp1);
+ result = (float) ((arg1)->X);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_COORDINATE_Y_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ COORDINATE *arg1 = (COORDINATE *) 0 ;
+ float arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ float val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:COORDINATE_Y_set",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_COORDINATE, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "COORDINATE_Y_set" "', argument " "1"" of type '" "COORDINATE *""'");
+ }
+ arg1 = (COORDINATE *)(argp1);
+ ecode2 = SWIG_AsVal_float(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "COORDINATE_Y_set" "', argument " "2"" of type '" "float""'");
+ }
+ arg2 = (float)(val2);
+ if (arg1) (arg1)->Y = arg2;
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_COORDINATE_Y_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ COORDINATE *arg1 = (COORDINATE *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:COORDINATE_Y_get",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_COORDINATE, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "COORDINATE_Y_get" "', argument " "1"" of type '" "COORDINATE *""'");
+ }
+ arg1 = (COORDINATE *)(argp1);
+ result = (float) ((arg1)->Y);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_COORDINATE_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ COORDINATE *arg1 = (COORDINATE *) 0 ;
+ int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ COORDINATE *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:COORDINATE_get",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_COORDINATE, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "COORDINATE_get" "', argument " "1"" of type '" "COORDINATE *""'");
+ }
+ arg1 = (COORDINATE *)(argp1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "COORDINATE_get" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ result = (COORDINATE *)COORDINATE_get(arg1,arg2);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_COORDINATE, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_new_COORDINATE(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ COORDINATE *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":new_COORDINATE")) SWIG_fail;
+ result = (COORDINATE *)calloc(1, sizeof(COORDINATE));
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_COORDINATE, SWIG_POINTER_NEW | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_COORDINATE(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ COORDINATE *arg1 = (COORDINATE *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_COORDINATE",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_COORDINATE, SWIG_POINTER_DISOWN | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_COORDINATE" "', argument " "1"" of type '" "COORDINATE *""'");
+ }
+ arg1 = (COORDINATE *)(argp1);
+ free((char *) arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *COORDINATE_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *obj;
+ if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
+ SWIG_TypeNewClientData(SWIGTYPE_p_COORDINATE, SWIG_NewClientData(obj));
+ return SWIG_Py_Void();
+}
+
+SWIGINTERN PyObject *_wrap_get_xy_coordinates(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ COORDINATE *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:get_xy_coordinates",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "get_xy_coordinates" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (COORDINATE *)get_xy_coordinates((char const *)arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_COORDINATE, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_SOLUTION_energy_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ SOLUTION *arg1 = (SOLUTION *) 0 ;
+ float arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ float val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:SOLUTION_energy_set",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_SOLUTION, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "SOLUTION_energy_set" "', argument " "1"" of type '" "SOLUTION *""'");
+ }
+ arg1 = (SOLUTION *)(argp1);
+ ecode2 = SWIG_AsVal_float(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "SOLUTION_energy_set" "', argument " "2"" of type '" "float""'");
+ }
+ arg2 = (float)(val2);
+ if (arg1) (arg1)->energy = arg2;
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_SOLUTION_energy_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ SOLUTION *arg1 = (SOLUTION *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:SOLUTION_energy_get",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_SOLUTION, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "SOLUTION_energy_get" "', argument " "1"" of type '" "SOLUTION *""'");
+ }
+ arg1 = (SOLUTION *)(argp1);
+ result = (float) ((arg1)->energy);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_SOLUTION_structure_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ SOLUTION *arg1 = (SOLUTION *) 0 ;
+ char *arg2 = (char *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:SOLUTION_structure_set",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_SOLUTION, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "SOLUTION_structure_set" "', argument " "1"" of type '" "SOLUTION *""'");
+ }
+ arg1 = (SOLUTION *)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "SOLUTION_structure_set" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ if (arg1->structure) free((char*)arg1->structure);
+ if (arg2) {
+ size_t size = strlen((const char *)(arg2)) + 1;
+ arg1->structure = (char *)(char *)memcpy((char *)malloc((size)*sizeof(char)), (const char *)(arg2), sizeof(char)*(size));
+ } else {
+ arg1->structure = 0;
+ }
+ resultobj = SWIG_Py_Void();
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_SOLUTION_structure_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ SOLUTION *arg1 = (SOLUTION *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:SOLUTION_structure_get",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_SOLUTION, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "SOLUTION_structure_get" "', argument " "1"" of type '" "SOLUTION *""'");
+ }
+ arg1 = (SOLUTION *)(argp1);
+ result = (char *) ((arg1)->structure);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_SOLUTION_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ SOLUTION *arg1 = (SOLUTION *) 0 ;
+ int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ SOLUTION *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:SOLUTION_get",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_SOLUTION, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "SOLUTION_get" "', argument " "1"" of type '" "SOLUTION *""'");
+ }
+ arg1 = (SOLUTION *)(argp1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "SOLUTION_get" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ result = (SOLUTION *)SOLUTION_get(arg1,arg2);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_SOLUTION, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_SOLUTION_size(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ SOLUTION *arg1 = (SOLUTION *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:SOLUTION_size",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_SOLUTION, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "SOLUTION_size" "', argument " "1"" of type '" "SOLUTION *""'");
+ }
+ arg1 = (SOLUTION *)(argp1);
+ result = (int)SOLUTION_size(arg1);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_SOLUTION(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ SOLUTION *arg1 = (SOLUTION *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_SOLUTION",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_SOLUTION, SWIG_POINTER_DISOWN | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_SOLUTION" "', argument " "1"" of type '" "SOLUTION *""'");
+ }
+ arg1 = (SOLUTION *)(argp1);
+ delete_SOLUTION(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_new_SOLUTION(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ SOLUTION *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":new_SOLUTION")) SWIG_fail;
+ result = (SOLUTION *)calloc(1, sizeof(SOLUTION));
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_SOLUTION, SWIG_POINTER_NEW | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *SOLUTION_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *obj;
+ if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
+ SWIG_TypeNewClientData(SWIGTYPE_p_SOLUTION, SWIG_NewClientData(obj));
+ return SWIG_Py_Void();
+}
+
+SWIGINTERN PyObject *_wrap_subopt(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ FILE *arg4 = (FILE *) NULL ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ SOLUTION *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO|O:subopt",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "subopt" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "subopt" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "subopt" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ if (obj3) {
+ {
+ if (PyFile_Check(obj3)) /* check for undef */
+ arg4 = PyFile_AsFile(obj3);
+ else arg4 = NULL;
+ }
+ }
+ result = (SOLUTION *)subopt(arg1,arg2,arg3,arg4);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_SOLUTION, SWIG_POINTER_OWN | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_subopt_sorted_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""subopt_sorted""' of type '""int""'");
+ }
+ subopt_sorted = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_subopt_sorted_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(subopt_sorted));
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_pr(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int arg2 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:get_pr",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_pr" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "get_pr" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ result = (double)get_pr(arg1,arg2);
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_b2HIT(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:b2HIT",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "b2HIT" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)b2HIT(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_b2C(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:b2C",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "b2C" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)b2C(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_b2Shapiro(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:b2Shapiro",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "b2Shapiro" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)b2Shapiro(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_add_root(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:add_root",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "add_root" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)add_root(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_expand_Shapiro(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:expand_Shapiro",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "expand_Shapiro" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)expand_Shapiro(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_expand_Full(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:expand_Full",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "expand_Full" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)expand_Full(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_unexpand_Full(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:unexpand_Full",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "unexpand_Full" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)unexpand_Full(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_unweight(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:unweight",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "unweight" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)unweight(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_unexpand_aligned_F(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:unexpand_aligned_F",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "unexpand_aligned_F" "', argument " "1"" of type '" "char *[2]""'");
+ }
+ arg1 = (char **)(argp1);
+ unexpand_aligned_F(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_parse_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:parse_structure",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "parse_structure" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ parse_structure(arg1);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_loop_size_set(PyObject *_val) {
+ {
+ int *inp = 0;
+ int res = SWIG_ConvertPtr(_val, SWIG_as_voidptrptr(&inp), SWIGTYPE_p_int, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""loop_size""' of type '""int [1000]""'");
+ } else if (inp) {
+ size_t ii = 0;
+ for (; ii < (size_t)1000; ++ii) loop_size[ii] = inp[ii];
+ } else {
+ SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in variable '""loop_size""' of type '""int [1000]""'");
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_loop_size_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(loop_size), SWIGTYPE_p_int, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_helix_size_set(PyObject *_val) {
+ {
+ int *inp = 0;
+ int res = SWIG_ConvertPtr(_val, SWIG_as_voidptrptr(&inp), SWIGTYPE_p_int, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""helix_size""' of type '""int [1000]""'");
+ } else if (inp) {
+ size_t ii = 0;
+ for (; ii < (size_t)1000; ++ii) helix_size[ii] = inp[ii];
+ } else {
+ SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in variable '""helix_size""' of type '""int [1000]""'");
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_helix_size_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(helix_size), SWIGTYPE_p_int, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_loop_degree_set(PyObject *_val) {
+ {
+ int *inp = 0;
+ int res = SWIG_ConvertPtr(_val, SWIG_as_voidptrptr(&inp), SWIGTYPE_p_int, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""loop_degree""' of type '""int [1000]""'");
+ } else if (inp) {
+ size_t ii = 0;
+ for (; ii < (size_t)1000; ++ii) loop_degree[ii] = inp[ii];
+ } else {
+ SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in variable '""loop_degree""' of type '""int [1000]""'");
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_loop_degree_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(loop_degree), SWIGTYPE_p_int, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_loops_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""loops""' of type '""int""'");
+ }
+ loops = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_loops_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(loops));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_unpaired_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""unpaired""' of type '""int""'");
+ }
+ unpaired = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_unpaired_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(unpaired));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_pairs_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""pairs""' of type '""int""'");
+ }
+ pairs = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_pairs_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(pairs));
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_make_tree(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ Tree *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:make_tree",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "make_tree" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (Tree *)make_tree(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_Tree, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_tree_edit_distance(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ Tree *arg1 = (Tree *) 0 ;
+ Tree *arg2 = (Tree *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:tree_edit_distance",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_Tree, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "tree_edit_distance" "', argument " "1"" of type '" "Tree *""'");
+ }
+ arg1 = (Tree *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_Tree, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "tree_edit_distance" "', argument " "2"" of type '" "Tree *""'");
+ }
+ arg2 = (Tree *)(argp2);
+ result = (float)tree_edit_distance(arg1,arg2);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_print_tree(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ Tree *arg1 = (Tree *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:print_tree",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_Tree, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "print_tree" "', argument " "1"" of type '" "Tree *""'");
+ }
+ arg1 = (Tree *)(argp1);
+ print_tree(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_tree(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ Tree *arg1 = (Tree *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:free_tree",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_Tree, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "free_tree" "', argument " "1"" of type '" "Tree *""'");
+ }
+ arg1 = (Tree *)(argp1);
+ free_tree(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_Make_swString(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ swString *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:Make_swString",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "Make_swString" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (swString *)Make_swString(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_swString, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_string_edit_distance(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ swString *arg1 = (swString *) 0 ;
+ swString *arg2 = (swString *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:string_edit_distance",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_swString, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "string_edit_distance" "', argument " "1"" of type '" "swString *""'");
+ }
+ arg1 = (swString *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_swString, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "string_edit_distance" "', argument " "2"" of type '" "swString *""'");
+ }
+ arg2 = (swString *)(argp2);
+ result = (float)string_edit_distance(arg1,arg2);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_profile_edit_distance(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ float *arg2 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:profile_edit_distance",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "profile_edit_distance" "', argument " "1"" of type '" "float const *""'");
+ }
+ arg1 = (float *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "profile_edit_distance" "', argument " "2"" of type '" "float const *""'");
+ }
+ arg2 = (float *)(argp2);
+ result = (float)profile_edit_distance((float const *)arg1,(float const *)arg2);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_Make_bp_profile_bppm(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double *arg1 = (double *) 0 ;
+ int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ float *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:Make_bp_profile_bppm",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_double, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "Make_bp_profile_bppm" "', argument " "1"" of type '" "double *""'");
+ }
+ arg1 = (double *)(argp1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "Make_bp_profile_bppm" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ result = (float *)Make_bp_profile_bppm(arg1,arg2);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_float, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_print_bppm(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:print_bppm",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "print_bppm" "', argument " "1"" of type '" "float const *""'");
+ }
+ arg1 = (float *)(argp1);
+ print_bppm((float const *)arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_profile(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ float *arg1 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:free_profile",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "free_profile" "', argument " "1"" of type '" "float *""'");
+ }
+ arg1 = (float *)(argp1);
+ free_profile(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_Make_bp_profile(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ float *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:Make_bp_profile",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "Make_bp_profile" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ result = (float *)Make_bp_profile(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_float, SWIG_POINTER_OWN | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_edit_backtrack_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""edit_backtrack""' of type '""int""'");
+ }
+ edit_backtrack = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_edit_backtrack_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(edit_backtrack));
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_aligned_line_set(PyObject *_val) {
+ {
+ char * *inp = 0;
+ int res = SWIG_ConvertPtr(_val, SWIG_as_voidptrptr(&inp), SWIGTYPE_p_p_char, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""aligned_line""' of type '""char *[2]""'");
+ } else if (inp) {
+ size_t ii = 0;
+ for (; ii < (size_t)2; ++ii) aligned_line[ii] = inp[ii];
+ } else {
+ SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in variable '""aligned_line""' of type '""char *[2]""'");
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_aligned_line_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(aligned_line), SWIGTYPE_p_p_char, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN int Swig_var_cost_matrix_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""cost_matrix""' of type '""int""'");
+ }
+ cost_matrix = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_cost_matrix_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(cost_matrix));
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_space(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ unsigned int arg1 ;
+ unsigned int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ void *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:space",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_unsigned_SS_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "space" "', argument " "1"" of type '" "unsigned int""'");
+ }
+ arg1 = (unsigned int)(val1);
+ result = (void *)space(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_void, SWIG_POINTER_OWN | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_xrealloc(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ void *arg1 = (void *) 0 ;
+ unsigned int arg2 ;
+ int res1 ;
+ unsigned int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ void *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:xrealloc",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0,SWIG_as_voidptrptr(&arg1), 0, 0);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "xrealloc" "', argument " "1"" of type '" "void *""'");
+ }
+ ecode2 = SWIG_AsVal_unsigned_SS_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "xrealloc" "', argument " "2"" of type '" "unsigned int""'");
+ }
+ arg2 = (unsigned int)(val2);
+ result = (void *)xrealloc(arg1,arg2);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_void, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_nrerror(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:nrerror",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "nrerror" "', argument " "1"" of type '" "char const []""'");
+ }
+ arg1 = (char *)(buf1);
+ nrerror((char const (*))arg1);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_warn_user(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:warn_user",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "warn_user" "', argument " "1"" of type '" "char const []""'");
+ }
+ arg1 = (char *)(buf1);
+ warn_user((char const (*))arg1);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_init_rand(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":init_rand")) SWIG_fail;
+ init_rand();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_xsubi_set(PyObject *_val) {
+ {
+ unsigned short *inp = 0;
+ int res = SWIG_ConvertPtr(_val, SWIG_as_voidptrptr(&inp), SWIGTYPE_p_unsigned_short, 0 );
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""xsubi""' of type '""unsigned short [3]""'");
+ } else if (inp) {
+ size_t ii = 0;
+ for (; ii < (size_t)3; ++ii) xsubi[ii] = inp[ii];
+ } else {
+ SWIG_exception_fail(SWIG_ValueError, "invalid null reference " "in variable '""xsubi""' of type '""unsigned short [3]""'");
+ }
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_xsubi_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_NewPointerObj(SWIG_as_voidptr(xsubi), SWIGTYPE_p_unsigned_short, 0 );
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_urn(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ double result;
+
+ if (!PyArg_ParseTuple(args,(char *)":urn")) SWIG_fail;
+ result = (double)urn();
+ resultobj = SWIG_From_double((double)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_int_urn(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int arg2 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:int_urn",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "int_urn" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "int_urn" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ result = (int)int_urn(arg1,arg2);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_filecopy(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ FILE *arg1 = (FILE *) 0 ;
+ FILE *arg2 = (FILE *) 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:filecopy",&obj0,&obj1)) SWIG_fail;
+ {
+ if (PyFile_Check(obj0)) /* check for undef */
+ arg1 = PyFile_AsFile(obj0);
+ else arg1 = NULL;
+ }
+ {
+ if (PyFile_Check(obj1)) /* check for undef */
+ arg2 = PyFile_AsFile(obj1);
+ else arg2 = NULL;
+ }
+ filecopy(arg1,arg2);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_time_stamp(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":time_stamp")) SWIG_fail;
+ result = (char *)time_stamp();
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ free((char*)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_random_string(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ char *arg2 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:random_string",&obj0,&obj1)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "random_string" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "random_string" "', argument " "2"" of type '" "char const []""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (char *)random_string(arg1,(char const (*))arg2);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_hamming(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:hamming",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "hamming" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "hamming" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (int)hamming((char const *)arg1,(char const *)arg2);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_hamming_bound(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:hamming_bound",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "hamming_bound" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "hamming_bound" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "hamming_bound" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ result = (int)hamming_bound((char const *)arg1,(char const *)arg2,arg3);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_line(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ FILE *arg1 = (FILE *) 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:get_line",&obj0)) SWIG_fail;
+ {
+ if (PyFile_Check(obj0)) /* check for undef */
+ arg1 = PyFile_AsFile(obj0);
+ else arg1 = NULL;
+ }
+ result = (char *)get_line(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ free((char*)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_skip_comment_lines(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:skip_comment_lines",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "skip_comment_lines" "', argument " "1"" of type '" "char **""'");
+ }
+ arg1 = (char **)(argp1);
+ result = (int)skip_comment_lines(arg1);
+ resultobj = SWIG_From_int((int)(result));
+ {
+ free(arg1);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_input_line(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ unsigned int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ unsigned int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ unsigned int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:get_input_line",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "get_input_line" "', argument " "1"" of type '" "char **""'");
+ }
+ arg1 = (char **)(argp1);
+ ecode2 = SWIG_AsVal_unsigned_SS_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "get_input_line" "', argument " "2"" of type '" "unsigned int""'");
+ }
+ arg2 = (unsigned int)(val2);
+ result = (unsigned int)get_input_line(arg1,arg2);
+ resultobj = SWIG_From_unsigned_SS_int((unsigned int)(result));
+ {
+ free(arg1);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_multi_input_line(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ unsigned int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ unsigned int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ unsigned int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:get_multi_input_line",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "get_multi_input_line" "', argument " "1"" of type '" "char **""'");
+ }
+ arg1 = (char **)(argp1);
+ ecode2 = SWIG_AsVal_unsigned_SS_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "get_multi_input_line" "', argument " "2"" of type '" "unsigned int""'");
+ }
+ arg2 = (unsigned int)(val2);
+ result = (unsigned int)get_multi_input_line(arg1,arg2);
+ resultobj = SWIG_From_unsigned_SS_int((unsigned int)(result));
+ {
+ free(arg1);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_read_record(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char **arg2 = (char **) 0 ;
+ char ***arg3 = (char ***) 0 ;
+ unsigned int arg4 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ unsigned int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ unsigned int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:read_record",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "read_record" "', argument " "1"" of type '" "char **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "read_record" "', argument " "2"" of type '" "char **""'");
+ }
+ arg2 = (char **)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "read_record" "', argument " "3"" of type '" "char ***""'");
+ }
+ arg3 = (char ***)(argp3);
+ ecode4 = SWIG_AsVal_unsigned_SS_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "read_record" "', argument " "4"" of type '" "unsigned int""'");
+ }
+ arg4 = (unsigned int)(val4);
+ result = (unsigned int)read_record(arg1,arg2,arg3,arg4);
+ resultobj = SWIG_From_unsigned_SS_int((unsigned int)(result));
+ {
+ free(arg1);
+ }
+ {
+ free(arg2);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ {
+ free(arg2);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_extract_record_rest_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ unsigned int arg2 ;
+ unsigned int arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ unsigned int val2 ;
+ int ecode2 = 0 ;
+ unsigned int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:extract_record_rest_structure",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "extract_record_rest_structure" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ ecode2 = SWIG_AsVal_unsigned_SS_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "extract_record_rest_structure" "', argument " "2"" of type '" "unsigned int""'");
+ }
+ arg2 = (unsigned int)(val2);
+ ecode3 = SWIG_AsVal_unsigned_SS_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "extract_record_rest_structure" "', argument " "3"" of type '" "unsigned int""'");
+ }
+ arg3 = (unsigned int)(val3);
+ result = (char *)extract_record_rest_structure((char const **)arg1,arg2,arg3);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ {
+ free(arg1);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_pack_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:pack_structure",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "pack_structure" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)pack_structure((char const *)arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_unpack_structure(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:unpack_structure",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "unpack_structure" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (char *)unpack_structure((char const *)arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ free((char*)result);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_make_pair_table(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:make_pair_table",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "make_pair_table" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (short *)make_pair_table((char const *)arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_short, SWIG_POINTER_OWN | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_make_pair_table_pk(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:make_pair_table_pk",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "make_pair_table_pk" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (short *)make_pair_table_pk((char const *)arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_short, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_copy_pair_table(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:copy_pair_table",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "copy_pair_table" "', argument " "1"" of type '" "short const *""'");
+ }
+ arg1 = (short *)(argp1);
+ result = (short *)copy_pair_table((short const *)arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_short, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_alimake_pair_table(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:alimake_pair_table",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "alimake_pair_table" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (short *)alimake_pair_table((char const *)arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_short, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_make_pair_table_snoop(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:make_pair_table_snoop",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "make_pair_table_snoop" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (short *)make_pair_table_snoop((char const *)arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_short, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_make_loop_index_pt(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:make_loop_index_pt",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "make_loop_index_pt" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ result = (int *)make_loop_index_pt(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_int, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_bp_distance(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:bp_distance",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "bp_distance" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "bp_distance" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (int)bp_distance((char const *)arg1,(char const *)arg2);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_print_tty_input_seq(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":print_tty_input_seq")) SWIG_fail;
+ print_tty_input_seq();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_print_tty_input_seq_str(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:print_tty_input_seq_str",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "print_tty_input_seq_str" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ print_tty_input_seq_str((char const *)arg1);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_print_tty_constraint_full(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+
+ if (!PyArg_ParseTuple(args,(char *)":print_tty_constraint_full")) SWIG_fail;
+ print_tty_constraint_full();
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_print_tty_constraint(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ unsigned int arg1 ;
+ unsigned int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:print_tty_constraint",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_unsigned_SS_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "print_tty_constraint" "', argument " "1"" of type '" "unsigned int""'");
+ }
+ arg1 = (unsigned int)(val1);
+ print_tty_constraint(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_str_DNA2RNA(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:str_DNA2RNA",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "str_DNA2RNA" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ str_DNA2RNA(arg1);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_str_uppercase(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:str_uppercase",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "str_uppercase" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ str_uppercase(arg1);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_iindx(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ unsigned int arg1 ;
+ unsigned int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:get_iindx",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_unsigned_SS_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_iindx" "', argument " "1"" of type '" "unsigned int""'");
+ }
+ arg1 = (unsigned int)(val1);
+ result = (int *)get_iindx(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_int, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_indx(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ unsigned int arg1 ;
+ unsigned int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:get_indx",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_unsigned_SS_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_indx" "', argument " "1"" of type '" "unsigned int""'");
+ }
+ arg1 = (unsigned int)(val1);
+ result = (int *)get_indx(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_int, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_getConstraint(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char **arg2 = (char **) 0 ;
+ unsigned int arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ unsigned int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:getConstraint",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "getConstraint" "', argument " "1"" of type '" "char **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "getConstraint" "', argument " "2"" of type '" "char const **""'");
+ }
+ arg2 = (char **)(argp2);
+ ecode3 = SWIG_AsVal_unsigned_SS_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "getConstraint" "', argument " "3"" of type '" "unsigned int""'");
+ }
+ arg3 = (unsigned int)(val3);
+ getConstraint(arg1,(char const **)arg2,arg3);
+ resultobj = SWIG_Py_Void();
+ {
+ free(arg1);
+ }
+ {
+ free(arg2);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ {
+ free(arg2);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_constrain_ptypes(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ unsigned int arg2 ;
+ char *arg3 = (char *) 0 ;
+ int *arg4 = (int *) 0 ;
+ int arg5 ;
+ unsigned int arg6 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ unsigned int val2 ;
+ int ecode2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ int val5 ;
+ int ecode5 = 0 ;
+ unsigned int val6 ;
+ int ecode6 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ PyObject * obj5 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOOO:constrain_ptypes",&obj0,&obj1,&obj2,&obj3,&obj4,&obj5)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "constrain_ptypes" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ ecode2 = SWIG_AsVal_unsigned_SS_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "constrain_ptypes" "', argument " "2"" of type '" "unsigned int""'");
+ }
+ arg2 = (unsigned int)(val2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "constrain_ptypes" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "constrain_ptypes" "', argument " "4"" of type '" "int *""'");
+ }
+ arg4 = (int *)(argp4);
+ ecode5 = SWIG_AsVal_int(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "constrain_ptypes" "', argument " "5"" of type '" "int""'");
+ }
+ arg5 = (int)(val5);
+ ecode6 = SWIG_AsVal_unsigned_SS_int(obj5, &val6);
+ if (!SWIG_IsOK(ecode6)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode6), "in method '" "constrain_ptypes" "', argument " "6"" of type '" "unsigned int""'");
+ }
+ arg6 = (unsigned int)(val6);
+ constrain_ptypes((char const *)arg1,arg2,arg3,arg4,arg5,arg6);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_make_referenceBP_array(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ unsigned int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ unsigned int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ unsigned int *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:make_referenceBP_array",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "make_referenceBP_array" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ ecode2 = SWIG_AsVal_unsigned_SS_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "make_referenceBP_array" "', argument " "2"" of type '" "unsigned int""'");
+ }
+ arg2 = (unsigned int)(val2);
+ result = (unsigned int *)make_referenceBP_array(arg1,arg2);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_unsigned_int, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_compute_BPdifferences(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ short *arg2 = (short *) 0 ;
+ unsigned int arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ unsigned int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ unsigned int *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:compute_BPdifferences",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "compute_BPdifferences" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "compute_BPdifferences" "', argument " "2"" of type '" "short *""'");
+ }
+ arg2 = (short *)(argp2);
+ ecode3 = SWIG_AsVal_unsigned_SS_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "compute_BPdifferences" "', argument " "3"" of type '" "unsigned int""'");
+ }
+ arg3 = (unsigned int)(val3);
+ result = (unsigned int *)compute_BPdifferences(arg1,arg2,arg3);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_unsigned_int, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_read_parameter_file(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:read_parameter_file",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "read_parameter_file" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ read_parameter_file(arg1);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_write_parameter_file(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:write_parameter_file",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "write_parameter_file" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ write_parameter_file(arg1);
+ resultobj = SWIG_Py_Void();
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_deref_any(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ void **arg1 = (void **) 0 ;
+ int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ void *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:deref_any",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_void, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "deref_any" "', argument " "1"" of type '" "void **""'");
+ }
+ arg1 = (void **)(argp1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "deref_any" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ result = (void *)deref_any(arg1,arg2);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_void, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_scale_parameters(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ paramT *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":scale_parameters")) SWIG_fail;
+ result = (paramT *)scale_parameters();
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_paramT, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_copy_parameters(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ paramT *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":copy_parameters")) SWIG_fail;
+ result = (paramT *)copy_parameters();
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_paramT, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_set_parameters(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ paramT *arg1 = (paramT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ paramT *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:set_parameters",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_paramT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "set_parameters" "', argument " "1"" of type '" "paramT *""'");
+ }
+ arg1 = (paramT *)(argp1);
+ result = (paramT *)set_parameters(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_paramT, 0 | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_aligned_line(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ int arg1 ;
+ int val1 ;
+ int ecode1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:get_aligned_line",&obj0)) SWIG_fail;
+ ecode1 = SWIG_AsVal_int(obj0, &val1);
+ if (!SWIG_IsOK(ecode1)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode1), "in method '" "get_aligned_line" "', argument " "1"" of type '" "int""'");
+ }
+ arg1 = (int)(val1);
+ result = (char *)get_aligned_line(arg1);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_make_loop_index(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:make_loop_index",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "make_loop_index" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (short *)make_loop_index((char const *)arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_short, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_duplexT_i_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:duplexT_i_set",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexT_i_set" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "duplexT_i_set" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ if (arg1) (arg1)->i = arg2;
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_duplexT_i_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:duplexT_i_get",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexT_i_get" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ result = (int) ((arg1)->i);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_duplexT_j_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ int arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:duplexT_j_set",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexT_j_set" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ ecode2 = SWIG_AsVal_int(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "duplexT_j_set" "', argument " "2"" of type '" "int""'");
+ }
+ arg2 = (int)(val2);
+ if (arg1) (arg1)->j = arg2;
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_duplexT_j_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:duplexT_j_get",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexT_j_get" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ result = (int) ((arg1)->j);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_duplexT_structure_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ char *arg2 = (char *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:duplexT_structure_set",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexT_structure_set" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "duplexT_structure_set" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ if (arg1->structure) free((char*)arg1->structure);
+ if (arg2) {
+ size_t size = strlen((const char *)(arg2)) + 1;
+ arg1->structure = (char *)(char *)memcpy((char *)malloc((size)*sizeof(char)), (const char *)(arg2), sizeof(char)*(size));
+ } else {
+ arg1->structure = 0;
+ }
+ resultobj = SWIG_Py_Void();
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_duplexT_structure_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ char *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:duplexT_structure_get",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexT_structure_get" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ result = (char *) ((arg1)->structure);
+ resultobj = SWIG_FromCharPtr((const char *)result);
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_duplexT_energy_set(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ float arg2 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ float val2 ;
+ int ecode2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:duplexT_energy_set",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexT_energy_set" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ ecode2 = SWIG_AsVal_float(obj1, &val2);
+ if (!SWIG_IsOK(ecode2)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode2), "in method '" "duplexT_energy_set" "', argument " "2"" of type '" "float""'");
+ }
+ arg2 = (float)(val2);
+ if (arg1) (arg1)->energy = arg2;
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_duplexT_energy_get(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:duplexT_energy_get",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexT_energy_get" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ result = (float) ((arg1)->energy);
+ resultobj = SWIG_From_float((float)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_new_duplexT(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)":new_duplexT")) SWIG_fail;
+ result = (duplexT *)calloc(1, sizeof(duplexT));
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_duplexT, SWIG_POINTER_NEW | 0 );
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_delete_duplexT(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ duplexT *arg1 = (duplexT *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:delete_duplexT",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_duplexT, SWIG_POINTER_DISOWN | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "delete_duplexT" "', argument " "1"" of type '" "duplexT *""'");
+ }
+ arg1 = (duplexT *)(argp1);
+ free((char *) arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *duplexT_swigregister(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *obj;
+ if (!PyArg_ParseTuple(args,(char*)"O:swigregister", &obj)) return NULL;
+ SWIG_TypeNewClientData(SWIGTYPE_p_duplexT, SWIG_NewClientData(obj));
+ return SWIG_Py_Void();
+}
+
+SWIGINTERN PyObject *_wrap_duplexfold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ duplexT result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:duplexfold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "duplexfold" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "duplexfold" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = duplexfold((char const *)arg1,(char const *)arg2);
+ resultobj = SWIG_NewPointerObj((duplexT *)memcpy((duplexT *)malloc(sizeof(duplexT)),&result,sizeof(duplexT)), SWIGTYPE_p_duplexT, SWIG_POINTER_OWN | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_aliduplexfold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char **arg2 = (char **) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ duplexT result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:aliduplexfold",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "aliduplexfold" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "aliduplexfold" "', argument " "2"" of type '" "char const **""'");
+ }
+ arg2 = (char **)(argp2);
+ result = aliduplexfold((char const **)arg1,(char const **)arg2);
+ resultobj = SWIG_NewPointerObj((duplexT *)memcpy((duplexT *)malloc(sizeof(duplexT)),&result,sizeof(duplexT)), SWIGTYPE_p_duplexT, SWIG_POINTER_OWN | 0 );
+ {
+ free(arg1);
+ }
+ {
+ free(arg2);
+ }
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ {
+ free(arg2);
+ }
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_encode_seq(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ PyObject * obj0 = 0 ;
+ short *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:encode_seq",&obj0)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "encode_seq" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ result = (short *)encode_seq(arg1);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_short, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_Lfold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:Lfold",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "Lfold" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "Lfold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "Lfold" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ result = (float)Lfold((char const *)arg1,arg2,arg3);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_Lfoldz(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ int arg4 ;
+ double arg5 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ double val5 ;
+ int ecode5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:Lfoldz",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "Lfoldz" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "Lfoldz" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "Lfoldz" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "Lfoldz" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ ecode5 = SWIG_AsVal_double(obj4, &val5);
+ if (!SWIG_IsOK(ecode5)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode5), "in method '" "Lfoldz" "', argument " "5"" of type '" "double""'");
+ }
+ arg5 = (double)(val5);
+ result = (float)Lfoldz((char const *)arg1,arg2,arg3,arg4,arg5);
+ resultobj = SWIG_From_float((float)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_aliLfold(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char **arg1 = (char **) 0 ;
+ char *arg2 = (char *) 0 ;
+ int arg3 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int val3 ;
+ int ecode3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ float result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:aliLfold",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "aliLfold" "', argument " "1"" of type '" "char const **""'");
+ }
+ arg1 = (char **)(argp1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "aliLfold" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ ecode3 = SWIG_AsVal_int(obj2, &val3);
+ if (!SWIG_IsOK(ecode3)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode3), "in method '" "aliLfold" "', argument " "3"" of type '" "int""'");
+ }
+ arg3 = (int)(val3);
+ result = (float)aliLfold((char const **)arg1,arg2,arg3);
+ resultobj = SWIG_From_float((float)(result));
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ {
+ free(arg1);
+ }
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN int Swig_var_rna_plot_type_set(PyObject *_val) {
+ {
+ int val;
+ int res = SWIG_AsVal_int(_val, &val);
+ if (!SWIG_IsOK(res)) {
+ SWIG_exception_fail(SWIG_ArgError(res), "in variable '""rna_plot_type""' of type '""int""'");
+ }
+ rna_plot_type = (int)(val);
+ }
+ return 0;
+fail:
+ return 1;
+}
+
+
+SWIGINTERN PyObject *Swig_var_rna_plot_type_get(void) {
+ PyObject *pyobj = 0;
+
+ pyobj = SWIG_From_int((int)(rna_plot_type));
+ return pyobj;
+}
+
+
+SWIGINTERN PyObject *_wrap_simple_xy_coordinates(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ float *arg2 = (float *) 0 ;
+ float *arg3 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:simple_xy_coordinates",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "simple_xy_coordinates" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "simple_xy_coordinates" "', argument " "2"" of type '" "float *""'");
+ }
+ arg2 = (float *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "simple_xy_coordinates" "', argument " "3"" of type '" "float *""'");
+ }
+ arg3 = (float *)(argp3);
+ result = (int)simple_xy_coordinates(arg1,arg2,arg3);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_simple_circplot_coordinates(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ short *arg1 = (short *) 0 ;
+ float *arg2 = (float *) 0 ;
+ float *arg3 = (float *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:simple_circplot_coordinates",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_short, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "simple_circplot_coordinates" "', argument " "1"" of type '" "short *""'");
+ }
+ arg1 = (short *)(argp1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "simple_circplot_coordinates" "', argument " "2"" of type '" "float *""'");
+ }
+ arg2 = (float *)(argp2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_float, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "simple_circplot_coordinates" "', argument " "3"" of type '" "float *""'");
+ }
+ arg3 = (float *)(argp3);
+ result = (int)simple_circplot_coordinates(arg1,arg2,arg3);
+ resultobj = SWIG_From_int((int)(result));
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_rna_plot_snoop_a(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int *arg4 = (int *) 0 ;
+ char **arg5 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ void *argp5 = 0 ;
+ int res5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:PS_rna_plot_snoop_a",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_rna_plot_snoop_a" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_rna_plot_snoop_a" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_rna_plot_snoop_a" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_int, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "PS_rna_plot_snoop_a" "', argument " "4"" of type '" "int *""'");
+ }
+ arg4 = (int *)(argp4);
+ res5 = SWIG_ConvertPtr(obj4, &argp5,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "PS_rna_plot_snoop_a" "', argument " "5"" of type '" "char const *[]""'");
+ }
+ arg5 = (char **)(argp5);
+ result = (int)PS_rna_plot_snoop_a(arg1,arg2,arg3,arg4,(char const *(*))arg5);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_rna_plot(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:PS_rna_plot",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_rna_plot" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_rna_plot" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_rna_plot" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ result = (int)PS_rna_plot(arg1,arg2,arg3);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_rna_plot_a(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ char *arg4 = (char *) 0 ;
+ char *arg5 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ int res4 ;
+ char *buf4 = 0 ;
+ int alloc4 = 0 ;
+ int res5 ;
+ char *buf5 = 0 ;
+ int alloc5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:PS_rna_plot_a",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_rna_plot_a" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_rna_plot_a" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_rna_plot_a" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ res4 = SWIG_AsCharPtrAndSize(obj3, &buf4, NULL, &alloc4);
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "PS_rna_plot_a" "', argument " "4"" of type '" "char *""'");
+ }
+ arg4 = (char *)(buf4);
+ res5 = SWIG_AsCharPtrAndSize(obj4, &buf5, NULL, &alloc5);
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "PS_rna_plot_a" "', argument " "5"" of type '" "char *""'");
+ }
+ arg5 = (char *)(buf5);
+ result = (int)PS_rna_plot_a(arg1,arg2,arg3,arg4,arg5);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ if (alloc4 == SWIG_NEWOBJ) free((char*)buf4);
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ if (alloc4 == SWIG_NEWOBJ) free((char*)buf4);
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_rna_plot_a_gquad(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ char *arg4 = (char *) 0 ;
+ char *arg5 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ int res4 ;
+ char *buf4 = 0 ;
+ int alloc4 = 0 ;
+ int res5 ;
+ char *buf5 = 0 ;
+ int alloc5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:PS_rna_plot_a_gquad",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_rna_plot_a_gquad" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_rna_plot_a_gquad" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_rna_plot_a_gquad" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ res4 = SWIG_AsCharPtrAndSize(obj3, &buf4, NULL, &alloc4);
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "PS_rna_plot_a_gquad" "', argument " "4"" of type '" "char *""'");
+ }
+ arg4 = (char *)(buf4);
+ res5 = SWIG_AsCharPtrAndSize(obj4, &buf5, NULL, &alloc5);
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "PS_rna_plot_a_gquad" "', argument " "5"" of type '" "char *""'");
+ }
+ arg5 = (char *)(buf5);
+ result = (int)PS_rna_plot_a_gquad(arg1,arg2,arg3,arg4,arg5);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ if (alloc4 == SWIG_NEWOBJ) free((char*)buf4);
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ if (alloc4 == SWIG_NEWOBJ) free((char*)buf4);
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_gmlRNA(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ char arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ char val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:gmlRNA",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "gmlRNA" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "gmlRNA" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "gmlRNA" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ ecode4 = SWIG_AsVal_char(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "gmlRNA" "', argument " "4"" of type '" "char""'");
+ }
+ arg4 = (char)(val4);
+ result = (int)gmlRNA(arg1,arg2,arg3,arg4);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_ssv_rna_plot(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:ssv_rna_plot",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "ssv_rna_plot" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "ssv_rna_plot" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "ssv_rna_plot" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ result = (int)ssv_rna_plot(arg1,arg2,arg3);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_svg_rna_plot(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:svg_rna_plot",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "svg_rna_plot" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "svg_rna_plot" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "svg_rna_plot" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ result = (int)svg_rna_plot(arg1,arg2,arg3);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_xrna_plot(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:xrna_plot",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "xrna_plot" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "xrna_plot" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "xrna_plot" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ result = (int)xrna_plot(arg1,arg2,arg3);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_color_dot_plot(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ cpair *arg2 = (cpair *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOO:PS_color_dot_plot",&obj0,&obj1,&obj2)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_color_dot_plot" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_cpair, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_color_dot_plot" "', argument " "2"" of type '" "cpair *""'");
+ }
+ arg2 = (cpair *)(argp2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_color_dot_plot" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ result = (int)PS_color_dot_plot(arg1,arg2,arg3);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_color_dot_plot_turn(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ cpair *arg2 = (cpair *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:PS_color_dot_plot_turn",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_color_dot_plot_turn" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_cpair, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_color_dot_plot_turn" "', argument " "2"" of type '" "cpair *""'");
+ }
+ arg2 = (cpair *)(argp2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_color_dot_plot_turn" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "PS_color_dot_plot_turn" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (int)PS_color_dot_plot_turn(arg1,arg2,arg3,arg4);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_dot_plot_list(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ plist *arg3 = (plist *) 0 ;
+ plist *arg4 = (plist *) 0 ;
+ char *arg5 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ int res5 ;
+ char *buf5 = 0 ;
+ int alloc5 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ PyObject * obj4 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOOO:PS_dot_plot_list",&obj0,&obj1,&obj2,&obj3,&obj4)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_dot_plot_list" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_dot_plot_list" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_dot_plot_list" "', argument " "3"" of type '" "plist *""'");
+ }
+ arg3 = (plist *)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "PS_dot_plot_list" "', argument " "4"" of type '" "plist *""'");
+ }
+ arg4 = (plist *)(argp4);
+ res5 = SWIG_AsCharPtrAndSize(obj4, &buf5, NULL, &alloc5);
+ if (!SWIG_IsOK(res5)) {
+ SWIG_exception_fail(SWIG_ArgError(res5), "in method '" "PS_dot_plot_list" "', argument " "5"" of type '" "char *""'");
+ }
+ arg5 = (char *)(buf5);
+ result = (int)PS_dot_plot_list(arg1,arg2,arg3,arg4,arg5);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc5 == SWIG_NEWOBJ) free((char*)buf5);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_dot_plot_turn(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ struct plist *arg2 = (struct plist *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ void *argp2 = 0 ;
+ int res2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:PS_dot_plot_turn",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_dot_plot_turn" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_ConvertPtr(obj1, &argp2,SWIGTYPE_p_plist, 0 | 0 );
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_dot_plot_turn" "', argument " "2"" of type '" "struct plist *""'");
+ }
+ arg2 = (struct plist *)(argp2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_dot_plot_turn" "', argument " "3"" of type '" "char *""'");
+ }
+ arg3 = (char *)(buf3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "PS_dot_plot_turn" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (int)PS_dot_plot_turn(arg1,arg2,arg3,arg4);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_color_aln(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char **arg3 ;
+ char **arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:PS_color_aln",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_color_aln" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_color_aln" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "PS_color_aln" "', argument " "3"" of type '" "char const *[]""'");
+ }
+ arg3 = (char **)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "PS_color_aln" "', argument " "4"" of type '" "char const *[]""'");
+ }
+ arg4 = (char **)(argp4);
+ result = (int)PS_color_aln((char const *)arg1,(char const *)arg2,(char const *(*))arg3,(char const *(*))arg4);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_aliPS_color_aln(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char **arg3 ;
+ char **arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ void *argp3 = 0 ;
+ int res3 = 0 ;
+ void *argp4 = 0 ;
+ int res4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:aliPS_color_aln",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "aliPS_color_aln" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "aliPS_color_aln" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_ConvertPtr(obj2, &argp3,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "aliPS_color_aln" "', argument " "3"" of type '" "char const *[]""'");
+ }
+ arg3 = (char **)(argp3);
+ res4 = SWIG_ConvertPtr(obj3, &argp4,SWIGTYPE_p_p_char, 0 | 0 );
+ if (!SWIG_IsOK(res4)) {
+ SWIG_exception_fail(SWIG_ArgError(res4), "in method '" "aliPS_color_aln" "', argument " "4"" of type '" "char const *[]""'");
+ }
+ arg4 = (char **)(argp4);
+ result = (int)aliPS_color_aln((char const *)arg1,(char const *)arg2,(char const *(*))arg3,(char const *(*))arg4);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_PS_dot_plot(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OO:PS_dot_plot",&obj0,&obj1)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "PS_dot_plot" "', argument " "1"" of type '" "char *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "PS_dot_plot" "', argument " "2"" of type '" "char *""'");
+ }
+ arg2 = (char *)(buf2);
+ result = (int)PS_dot_plot(arg1,arg2);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_find_saddle(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ int result;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:find_saddle",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "find_saddle" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "find_saddle" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "find_saddle" "', argument " "3"" of type '" "char const *""'");
+ }
+ arg3 = (char *)(buf3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "find_saddle" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (int)find_saddle((char const *)arg1,(char const *)arg2,(char const *)arg3,arg4);
+ resultobj = SWIG_From_int((int)(result));
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_get_path(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ char *arg1 = (char *) 0 ;
+ char *arg2 = (char *) 0 ;
+ char *arg3 = (char *) 0 ;
+ int arg4 ;
+ int res1 ;
+ char *buf1 = 0 ;
+ int alloc1 = 0 ;
+ int res2 ;
+ char *buf2 = 0 ;
+ int alloc2 = 0 ;
+ int res3 ;
+ char *buf3 = 0 ;
+ int alloc3 = 0 ;
+ int val4 ;
+ int ecode4 = 0 ;
+ PyObject * obj0 = 0 ;
+ PyObject * obj1 = 0 ;
+ PyObject * obj2 = 0 ;
+ PyObject * obj3 = 0 ;
+ path_t *result = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"OOOO:get_path",&obj0,&obj1,&obj2,&obj3)) SWIG_fail;
+ res1 = SWIG_AsCharPtrAndSize(obj0, &buf1, NULL, &alloc1);
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "get_path" "', argument " "1"" of type '" "char const *""'");
+ }
+ arg1 = (char *)(buf1);
+ res2 = SWIG_AsCharPtrAndSize(obj1, &buf2, NULL, &alloc2);
+ if (!SWIG_IsOK(res2)) {
+ SWIG_exception_fail(SWIG_ArgError(res2), "in method '" "get_path" "', argument " "2"" of type '" "char const *""'");
+ }
+ arg2 = (char *)(buf2);
+ res3 = SWIG_AsCharPtrAndSize(obj2, &buf3, NULL, &alloc3);
+ if (!SWIG_IsOK(res3)) {
+ SWIG_exception_fail(SWIG_ArgError(res3), "in method '" "get_path" "', argument " "3"" of type '" "char const *""'");
+ }
+ arg3 = (char *)(buf3);
+ ecode4 = SWIG_AsVal_int(obj3, &val4);
+ if (!SWIG_IsOK(ecode4)) {
+ SWIG_exception_fail(SWIG_ArgError(ecode4), "in method '" "get_path" "', argument " "4"" of type '" "int""'");
+ }
+ arg4 = (int)(val4);
+ result = (path_t *)get_path((char const *)arg1,(char const *)arg2,(char const *)arg3,arg4);
+ resultobj = SWIG_NewPointerObj(SWIG_as_voidptr(result), SWIGTYPE_p_path_t, 0 | 0 );
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return resultobj;
+fail:
+ if (alloc1 == SWIG_NEWOBJ) free((char*)buf1);
+ if (alloc2 == SWIG_NEWOBJ) free((char*)buf2);
+ if (alloc3 == SWIG_NEWOBJ) free((char*)buf3);
+ return NULL;
+}
+
+
+SWIGINTERN PyObject *_wrap_free_path(PyObject *SWIGUNUSEDPARM(self), PyObject *args) {
+ PyObject *resultobj = 0;
+ path_t *arg1 = (path_t *) 0 ;
+ void *argp1 = 0 ;
+ int res1 = 0 ;
+ PyObject * obj0 = 0 ;
+
+ if (!PyArg_ParseTuple(args,(char *)"O:free_path",&obj0)) SWIG_fail;
+ res1 = SWIG_ConvertPtr(obj0, &argp1,SWIGTYPE_p_path_t, 0 | 0 );
+ if (!SWIG_IsOK(res1)) {
+ SWIG_exception_fail(SWIG_ArgError(res1), "in method '" "free_path" "', argument " "1"" of type '" "path_t *""'");
+ }
+ arg1 = (path_t *)(argp1);
+ free_path(arg1);
+ resultobj = SWIG_Py_Void();
+ return resultobj;
+fail:
+ return NULL;
+}
+
+
+static PyMethodDef SwigMethods[] = {
+ { (char *)"SWIG_PyInstanceMethod_New", (PyCFunction)SWIG_PyInstanceMethod_New, METH_O, NULL},
+ { (char *)"new_intP", _wrap_new_intP, METH_VARARGS, NULL},
+ { (char *)"delete_intP", _wrap_delete_intP, METH_VARARGS, NULL},
+ { (char *)"intP_getitem", _wrap_intP_getitem, METH_VARARGS, NULL},
+ { (char *)"intP_setitem", _wrap_intP_setitem, METH_VARARGS, NULL},
+ { (char *)"new_intArray", _wrap_new_intArray, METH_VARARGS, NULL},
+ { (char *)"delete_intArray", _wrap_delete_intArray, METH_VARARGS, NULL},
+ { (char *)"intArray___getitem__", _wrap_intArray___getitem__, METH_VARARGS, NULL},
+ { (char *)"intArray___setitem__", _wrap_intArray___setitem__, METH_VARARGS, NULL},
+ { (char *)"intArray_cast", _wrap_intArray_cast, METH_VARARGS, NULL},
+ { (char *)"intArray_frompointer", _wrap_intArray_frompointer, METH_VARARGS, NULL},
+ { (char *)"intArray_swigregister", intArray_swigregister, METH_VARARGS, NULL},
+ { (char *)"new_floatP", _wrap_new_floatP, METH_VARARGS, NULL},
+ { (char *)"delete_floatP", _wrap_delete_floatP, METH_VARARGS, NULL},
+ { (char *)"floatP_getitem", _wrap_floatP_getitem, METH_VARARGS, NULL},
+ { (char *)"floatP_setitem", _wrap_floatP_setitem, METH_VARARGS, NULL},
+ { (char *)"new_floatArray", _wrap_new_floatArray, METH_VARARGS, NULL},
+ { (char *)"delete_floatArray", _wrap_delete_floatArray, METH_VARARGS, NULL},
+ { (char *)"floatArray___getitem__", _wrap_floatArray___getitem__, METH_VARARGS, NULL},
+ { (char *)"floatArray___setitem__", _wrap_floatArray___setitem__, METH_VARARGS, NULL},
+ { (char *)"floatArray_cast", _wrap_floatArray_cast, METH_VARARGS, NULL},
+ { (char *)"floatArray_frompointer", _wrap_floatArray_frompointer, METH_VARARGS, NULL},
+ { (char *)"floatArray_swigregister", floatArray_swigregister, METH_VARARGS, NULL},
+ { (char *)"new_doubleP", _wrap_new_doubleP, METH_VARARGS, NULL},
+ { (char *)"delete_doubleP", _wrap_delete_doubleP, METH_VARARGS, NULL},
+ { (char *)"doubleP_getitem", _wrap_doubleP_getitem, METH_VARARGS, NULL},
+ { (char *)"doubleP_setitem", _wrap_doubleP_setitem, METH_VARARGS, NULL},
+ { (char *)"new_doubleArray", _wrap_new_doubleArray, METH_VARARGS, NULL},
+ { (char *)"delete_doubleArray", _wrap_delete_doubleArray, METH_VARARGS, NULL},
+ { (char *)"doubleArray___getitem__", _wrap_doubleArray___getitem__, METH_VARARGS, NULL},
+ { (char *)"doubleArray___setitem__", _wrap_doubleArray___setitem__, METH_VARARGS, NULL},
+ { (char *)"doubleArray_cast", _wrap_doubleArray_cast, METH_VARARGS, NULL},
+ { (char *)"doubleArray_frompointer", _wrap_doubleArray_frompointer, METH_VARARGS, NULL},
+ { (char *)"doubleArray_swigregister", doubleArray_swigregister, METH_VARARGS, NULL},
+ { (char *)"new_ushortP", _wrap_new_ushortP, METH_VARARGS, NULL},
+ { (char *)"delete_ushortP", _wrap_delete_ushortP, METH_VARARGS, NULL},
+ { (char *)"ushortP_getitem", _wrap_ushortP_getitem, METH_VARARGS, NULL},
+ { (char *)"ushortP_setitem", _wrap_ushortP_setitem, METH_VARARGS, NULL},
+ { (char *)"new_shortP", _wrap_new_shortP, METH_VARARGS, NULL},
+ { (char *)"delete_shortP", _wrap_delete_shortP, METH_VARARGS, NULL},
+ { (char *)"shortP_getitem", _wrap_shortP_getitem, METH_VARARGS, NULL},
+ { (char *)"shortP_setitem", _wrap_shortP_setitem, METH_VARARGS, NULL},
+ { (char *)"cdata", _wrap_cdata, METH_VARARGS, NULL},
+ { (char *)"memmove", _wrap_memmove, METH_VARARGS, NULL},
+ { (char *)"fold", _wrap_fold, METH_VARARGS, NULL},
+ { (char *)"fold_par", _wrap_fold_par, METH_VARARGS, NULL},
+ { (char *)"circfold", _wrap_circfold, METH_VARARGS, NULL},
+ { (char *)"energy_of_structure", _wrap_energy_of_structure, METH_VARARGS, NULL},
+ { (char *)"energy_of_struct_par", _wrap_energy_of_struct_par, METH_VARARGS, NULL},
+ { (char *)"energy_of_circ_structure", _wrap_energy_of_circ_structure, METH_VARARGS, NULL},
+ { (char *)"energy_of_circ_struct_par", _wrap_energy_of_circ_struct_par, METH_VARARGS, NULL},
+ { (char *)"energy_of_gquad_structure", _wrap_energy_of_gquad_structure, METH_VARARGS, NULL},
+ { (char *)"energy_of_structure_pt", _wrap_energy_of_structure_pt, METH_VARARGS, NULL},
+ { (char *)"energy_of_struct_pt_par", _wrap_energy_of_struct_pt_par, METH_VARARGS, NULL},
+ { (char *)"free_arrays", _wrap_free_arrays, METH_VARARGS, NULL},
+ { (char *)"parenthesis_structure", _wrap_parenthesis_structure, METH_VARARGS, NULL},
+ { (char *)"parenthesis_zuker", _wrap_parenthesis_zuker, METH_VARARGS, NULL},
+ { (char *)"letter_structure", _wrap_letter_structure, METH_VARARGS, NULL},
+ { (char *)"update_fold_params", _wrap_update_fold_params, METH_VARARGS, NULL},
+ { (char *)"update_fold_params_par", _wrap_update_fold_params_par, METH_VARARGS, NULL},
+ { (char *)"backtrack_fold_from_pair", _wrap_backtrack_fold_from_pair, METH_VARARGS, NULL},
+ { (char *)"energy_of_move", _wrap_energy_of_move, METH_VARARGS, NULL},
+ { (char *)"energy_of_move_pt", _wrap_energy_of_move_pt, METH_VARARGS, NULL},
+ { (char *)"loop_energy", _wrap_loop_energy, METH_VARARGS, NULL},
+ { (char *)"export_fold_arrays", _wrap_export_fold_arrays, METH_VARARGS, NULL},
+ { (char *)"export_fold_arrays_par", _wrap_export_fold_arrays_par, METH_VARARGS, NULL},
+ { (char *)"export_circfold_arrays", _wrap_export_circfold_arrays, METH_VARARGS, NULL},
+ { (char *)"export_circfold_arrays_par", _wrap_export_circfold_arrays_par, METH_VARARGS, NULL},
+ { (char *)"assign_plist_from_db", _wrap_assign_plist_from_db, METH_VARARGS, NULL},
+ { (char *)"LoopEnergy", _wrap_LoopEnergy, METH_VARARGS, NULL},
+ { (char *)"HairpinE", _wrap_HairpinE, METH_VARARGS, NULL},
+ { (char *)"initialize_fold", _wrap_initialize_fold, METH_VARARGS, NULL},
+ { (char *)"energy_of_struct", _wrap_energy_of_struct, METH_VARARGS, NULL},
+ { (char *)"energy_of_struct_pt", _wrap_energy_of_struct_pt, METH_VARARGS, NULL},
+ { (char *)"energy_of_circ_struct", _wrap_energy_of_circ_struct, METH_VARARGS, NULL},
+ { (char *)"cofold", _wrap_cofold, METH_VARARGS, NULL},
+ { (char *)"cofold_par", _wrap_cofold_par, METH_VARARGS, NULL},
+ { (char *)"free_co_arrays", _wrap_free_co_arrays, METH_VARARGS, NULL},
+ { (char *)"update_cofold_params", _wrap_update_cofold_params, METH_VARARGS, NULL},
+ { (char *)"update_cofold_params_par", _wrap_update_cofold_params_par, METH_VARARGS, NULL},
+ { (char *)"export_cofold_arrays_gq", _wrap_export_cofold_arrays_gq, METH_VARARGS, NULL},
+ { (char *)"export_cofold_arrays", _wrap_export_cofold_arrays, METH_VARARGS, NULL},
+ { (char *)"zukersubopt", _wrap_zukersubopt, METH_VARARGS, NULL},
+ { (char *)"zukersubopt_par", _wrap_zukersubopt_par, METH_VARARGS, NULL},
+ { (char *)"get_monomere_mfes", _wrap_get_monomere_mfes, METH_VARARGS, NULL},
+ { (char *)"initialize_cofold", _wrap_initialize_cofold, METH_VARARGS, NULL},
+ { (char *)"pf_fold", _wrap_pf_fold, METH_VARARGS, NULL},
+ { (char *)"pf_fold_par", _wrap_pf_fold_par, METH_VARARGS, NULL},
+ { (char *)"pf_circ_fold", _wrap_pf_circ_fold, METH_VARARGS, NULL},
+ { (char *)"pbacktrack", _wrap_pbacktrack, METH_VARARGS, NULL},
+ { (char *)"pbacktrack_circ", _wrap_pbacktrack_circ, METH_VARARGS, NULL},
+ { (char *)"free_pf_arrays", _wrap_free_pf_arrays, METH_VARARGS, NULL},
+ { (char *)"update_pf_params", _wrap_update_pf_params, METH_VARARGS, NULL},
+ { (char *)"update_pf_params_par", _wrap_update_pf_params_par, METH_VARARGS, NULL},
+ { (char *)"export_bppm", _wrap_export_bppm, METH_VARARGS, NULL},
+ { (char *)"assign_plist_from_pr", _wrap_assign_plist_from_pr, METH_VARARGS, NULL},
+ { (char *)"assign_plist_gquad_from_pr", _wrap_assign_plist_gquad_from_pr, METH_VARARGS, NULL},
+ { (char *)"get_centroid_struct_gquad_pr", _wrap_get_centroid_struct_gquad_pr, METH_VARARGS, NULL},
+ { (char *)"get_pf_arrays", _wrap_get_pf_arrays, METH_VARARGS, NULL},
+ { (char *)"get_subseq_F", _wrap_get_subseq_F, METH_VARARGS, NULL},
+ { (char *)"get_centroid_struct_pl", _wrap_get_centroid_struct_pl, METH_VARARGS, NULL},
+ { (char *)"get_centroid_struct_pr", _wrap_get_centroid_struct_pr, METH_VARARGS, NULL},
+ { (char *)"mean_bp_distance", _wrap_mean_bp_distance, METH_VARARGS, NULL},
+ { (char *)"mean_bp_distance_pr", _wrap_mean_bp_distance_pr, METH_VARARGS, NULL},
+ { (char *)"bppm_to_structure", _wrap_bppm_to_structure, METH_VARARGS, NULL},
+ { (char *)"stackProb", _wrap_stackProb, METH_VARARGS, NULL},
+ { (char *)"bppm_symbol", _wrap_bppm_symbol, METH_VARARGS, NULL},
+ { (char *)"init_pf_fold", _wrap_init_pf_fold, METH_VARARGS, NULL},
+ { (char *)"centroid", _wrap_centroid, METH_VARARGS, NULL},
+ { (char *)"mean_bp_dist", _wrap_mean_bp_dist, METH_VARARGS, NULL},
+ { (char *)"expLoopEnergy", _wrap_expLoopEnergy, METH_VARARGS, NULL},
+ { (char *)"expHairpinEnergy", _wrap_expHairpinEnergy, METH_VARARGS, NULL},
+ { (char *)"co_pf_fold", _wrap_co_pf_fold, METH_VARARGS, NULL},
+ { (char *)"co_pf_fold_par", _wrap_co_pf_fold_par, METH_VARARGS, NULL},
+ { (char *)"export_co_bppm", _wrap_export_co_bppm, METH_VARARGS, NULL},
+ { (char *)"free_co_pf_arrays", _wrap_free_co_pf_arrays, METH_VARARGS, NULL},
+ { (char *)"update_co_pf_params", _wrap_update_co_pf_params, METH_VARARGS, NULL},
+ { (char *)"update_co_pf_params_par", _wrap_update_co_pf_params_par, METH_VARARGS, NULL},
+ { (char *)"get_concentrations", _wrap_get_concentrations, METH_VARARGS, NULL},
+ { (char *)"inverse_fold", _wrap_inverse_fold, METH_VARARGS, NULL},
+ { (char *)"inverse_pf_fold", _wrap_inverse_pf_fold, METH_VARARGS, NULL},
+ { (char *)"option_string", _wrap_option_string, METH_VARARGS, NULL},
+ { (char *)"set_model_details", _wrap_set_model_details, METH_VARARGS, NULL},
+ { (char *)"update_alifold_params", _wrap_update_alifold_params, METH_VARARGS, NULL},
+ { (char *)"circalifold", _wrap_circalifold, METH_VARARGS, NULL},
+ { (char *)"free_alifold_arrays", _wrap_free_alifold_arrays, METH_VARARGS, NULL},
+ { (char *)"get_mpi", _wrap_get_mpi, METH_VARARGS, NULL},
+ { (char *)"readribosum", _wrap_readribosum, METH_VARARGS, NULL},
+ { (char *)"energy_of_alistruct", _wrap_energy_of_alistruct, METH_VARARGS, NULL},
+ { (char *)"energy_of_ali_gquad_structure", _wrap_energy_of_ali_gquad_structure, METH_VARARGS, NULL},
+ { (char *)"encode_ali_sequence", _wrap_encode_ali_sequence, METH_VARARGS, NULL},
+ { (char *)"alloc_sequence_arrays", _wrap_alloc_sequence_arrays, METH_VARARGS, NULL},
+ { (char *)"free_sequence_arrays", _wrap_free_sequence_arrays, METH_VARARGS, NULL},
+ { (char *)"alipf_fold_par", _wrap_alipf_fold_par, METH_VARARGS, NULL},
+ { (char *)"alipf_fold", _wrap_alipf_fold, METH_VARARGS, NULL},
+ { (char *)"alipf_circ_fold", _wrap_alipf_circ_fold, METH_VARARGS, NULL},
+ { (char *)"export_ali_bppm", _wrap_export_ali_bppm, METH_VARARGS, NULL},
+ { (char *)"free_alipf_arrays", _wrap_free_alipf_arrays, METH_VARARGS, NULL},
+ { (char *)"alipbacktrack", _wrap_alipbacktrack, METH_VARARGS, NULL},
+ { (char *)"get_alipf_arrays", _wrap_get_alipf_arrays, METH_VARARGS, NULL},
+ { (char *)"alifold", _wrap_alifold, METH_VARARGS, NULL},
+ { (char *)"consensus", _wrap_consensus, METH_VARARGS, NULL},
+ { (char *)"consens_mis", _wrap_consens_mis, METH_VARARGS, NULL},
+ { (char *)"COORDINATE_X_set", _wrap_COORDINATE_X_set, METH_VARARGS, NULL},
+ { (char *)"COORDINATE_X_get", _wrap_COORDINATE_X_get, METH_VARARGS, NULL},
+ { (char *)"COORDINATE_Y_set", _wrap_COORDINATE_Y_set, METH_VARARGS, NULL},
+ { (char *)"COORDINATE_Y_get", _wrap_COORDINATE_Y_get, METH_VARARGS, NULL},
+ { (char *)"COORDINATE_get", _wrap_COORDINATE_get, METH_VARARGS, NULL},
+ { (char *)"new_COORDINATE", _wrap_new_COORDINATE, METH_VARARGS, NULL},
+ { (char *)"delete_COORDINATE", _wrap_delete_COORDINATE, METH_VARARGS, NULL},
+ { (char *)"COORDINATE_swigregister", COORDINATE_swigregister, METH_VARARGS, NULL},
+ { (char *)"get_xy_coordinates", _wrap_get_xy_coordinates, METH_VARARGS, NULL},
+ { (char *)"SOLUTION_energy_set", _wrap_SOLUTION_energy_set, METH_VARARGS, NULL},
+ { (char *)"SOLUTION_energy_get", _wrap_SOLUTION_energy_get, METH_VARARGS, NULL},
+ { (char *)"SOLUTION_structure_set", _wrap_SOLUTION_structure_set, METH_VARARGS, NULL},
+ { (char *)"SOLUTION_structure_get", _wrap_SOLUTION_structure_get, METH_VARARGS, NULL},
+ { (char *)"SOLUTION_get", _wrap_SOLUTION_get, METH_VARARGS, NULL},
+ { (char *)"SOLUTION_size", _wrap_SOLUTION_size, METH_VARARGS, NULL},
+ { (char *)"delete_SOLUTION", _wrap_delete_SOLUTION, METH_VARARGS, NULL},
+ { (char *)"new_SOLUTION", _wrap_new_SOLUTION, METH_VARARGS, NULL},
+ { (char *)"SOLUTION_swigregister", SOLUTION_swigregister, METH_VARARGS, NULL},
+ { (char *)"subopt", _wrap_subopt, METH_VARARGS, NULL},
+ { (char *)"get_pr", _wrap_get_pr, METH_VARARGS, NULL},
+ { (char *)"b2HIT", _wrap_b2HIT, METH_VARARGS, NULL},
+ { (char *)"b2C", _wrap_b2C, METH_VARARGS, NULL},
+ { (char *)"b2Shapiro", _wrap_b2Shapiro, METH_VARARGS, NULL},
+ { (char *)"add_root", _wrap_add_root, METH_VARARGS, NULL},
+ { (char *)"expand_Shapiro", _wrap_expand_Shapiro, METH_VARARGS, NULL},
+ { (char *)"expand_Full", _wrap_expand_Full, METH_VARARGS, NULL},
+ { (char *)"unexpand_Full", _wrap_unexpand_Full, METH_VARARGS, NULL},
+ { (char *)"unweight", _wrap_unweight, METH_VARARGS, NULL},
+ { (char *)"unexpand_aligned_F", _wrap_unexpand_aligned_F, METH_VARARGS, NULL},
+ { (char *)"parse_structure", _wrap_parse_structure, METH_VARARGS, NULL},
+ { (char *)"make_tree", _wrap_make_tree, METH_VARARGS, NULL},
+ { (char *)"tree_edit_distance", _wrap_tree_edit_distance, METH_VARARGS, NULL},
+ { (char *)"print_tree", _wrap_print_tree, METH_VARARGS, NULL},
+ { (char *)"free_tree", _wrap_free_tree, METH_VARARGS, NULL},
+ { (char *)"Make_swString", _wrap_Make_swString, METH_VARARGS, NULL},
+ { (char *)"string_edit_distance", _wrap_string_edit_distance, METH_VARARGS, NULL},
+ { (char *)"profile_edit_distance", _wrap_profile_edit_distance, METH_VARARGS, NULL},
+ { (char *)"Make_bp_profile_bppm", _wrap_Make_bp_profile_bppm, METH_VARARGS, NULL},
+ { (char *)"print_bppm", _wrap_print_bppm, METH_VARARGS, NULL},
+ { (char *)"free_profile", _wrap_free_profile, METH_VARARGS, NULL},
+ { (char *)"Make_bp_profile", _wrap_Make_bp_profile, METH_VARARGS, NULL},
+ { (char *)"space", _wrap_space, METH_VARARGS, NULL},
+ { (char *)"xrealloc", _wrap_xrealloc, METH_VARARGS, NULL},
+ { (char *)"nrerror", _wrap_nrerror, METH_VARARGS, NULL},
+ { (char *)"warn_user", _wrap_warn_user, METH_VARARGS, NULL},
+ { (char *)"init_rand", _wrap_init_rand, METH_VARARGS, NULL},
+ { (char *)"urn", _wrap_urn, METH_VARARGS, NULL},
+ { (char *)"int_urn", _wrap_int_urn, METH_VARARGS, NULL},
+ { (char *)"filecopy", _wrap_filecopy, METH_VARARGS, NULL},
+ { (char *)"time_stamp", _wrap_time_stamp, METH_VARARGS, NULL},
+ { (char *)"random_string", _wrap_random_string, METH_VARARGS, NULL},
+ { (char *)"hamming", _wrap_hamming, METH_VARARGS, NULL},
+ { (char *)"hamming_bound", _wrap_hamming_bound, METH_VARARGS, NULL},
+ { (char *)"get_line", _wrap_get_line, METH_VARARGS, NULL},
+ { (char *)"skip_comment_lines", _wrap_skip_comment_lines, METH_VARARGS, NULL},
+ { (char *)"get_input_line", _wrap_get_input_line, METH_VARARGS, NULL},
+ { (char *)"get_multi_input_line", _wrap_get_multi_input_line, METH_VARARGS, NULL},
+ { (char *)"read_record", _wrap_read_record, METH_VARARGS, NULL},
+ { (char *)"extract_record_rest_structure", _wrap_extract_record_rest_structure, METH_VARARGS, NULL},
+ { (char *)"pack_structure", _wrap_pack_structure, METH_VARARGS, NULL},
+ { (char *)"unpack_structure", _wrap_unpack_structure, METH_VARARGS, NULL},
+ { (char *)"make_pair_table", _wrap_make_pair_table, METH_VARARGS, NULL},
+ { (char *)"make_pair_table_pk", _wrap_make_pair_table_pk, METH_VARARGS, NULL},
+ { (char *)"copy_pair_table", _wrap_copy_pair_table, METH_VARARGS, NULL},
+ { (char *)"alimake_pair_table", _wrap_alimake_pair_table, METH_VARARGS, NULL},
+ { (char *)"make_pair_table_snoop", _wrap_make_pair_table_snoop, METH_VARARGS, NULL},
+ { (char *)"make_loop_index_pt", _wrap_make_loop_index_pt, METH_VARARGS, NULL},
+ { (char *)"bp_distance", _wrap_bp_distance, METH_VARARGS, NULL},
+ { (char *)"print_tty_input_seq", _wrap_print_tty_input_seq, METH_VARARGS, NULL},
+ { (char *)"print_tty_input_seq_str", _wrap_print_tty_input_seq_str, METH_VARARGS, NULL},
+ { (char *)"print_tty_constraint_full", _wrap_print_tty_constraint_full, METH_VARARGS, NULL},
+ { (char *)"print_tty_constraint", _wrap_print_tty_constraint, METH_VARARGS, NULL},
+ { (char *)"str_DNA2RNA", _wrap_str_DNA2RNA, METH_VARARGS, NULL},
+ { (char *)"str_uppercase", _wrap_str_uppercase, METH_VARARGS, NULL},
+ { (char *)"get_iindx", _wrap_get_iindx, METH_VARARGS, NULL},
+ { (char *)"get_indx", _wrap_get_indx, METH_VARARGS, NULL},
+ { (char *)"getConstraint", _wrap_getConstraint, METH_VARARGS, NULL},
+ { (char *)"constrain_ptypes", _wrap_constrain_ptypes, METH_VARARGS, NULL},
+ { (char *)"make_referenceBP_array", _wrap_make_referenceBP_array, METH_VARARGS, NULL},
+ { (char *)"compute_BPdifferences", _wrap_compute_BPdifferences, METH_VARARGS, NULL},
+ { (char *)"read_parameter_file", _wrap_read_parameter_file, METH_VARARGS, NULL},
+ { (char *)"write_parameter_file", _wrap_write_parameter_file, METH_VARARGS, NULL},
+ { (char *)"deref_any", _wrap_deref_any, METH_VARARGS, NULL},
+ { (char *)"scale_parameters", _wrap_scale_parameters, METH_VARARGS, NULL},
+ { (char *)"copy_parameters", _wrap_copy_parameters, METH_VARARGS, NULL},
+ { (char *)"set_parameters", _wrap_set_parameters, METH_VARARGS, NULL},
+ { (char *)"get_aligned_line", _wrap_get_aligned_line, METH_VARARGS, NULL},
+ { (char *)"make_loop_index", _wrap_make_loop_index, METH_VARARGS, NULL},
+ { (char *)"duplexT_i_set", _wrap_duplexT_i_set, METH_VARARGS, NULL},
+ { (char *)"duplexT_i_get", _wrap_duplexT_i_get, METH_VARARGS, NULL},
+ { (char *)"duplexT_j_set", _wrap_duplexT_j_set, METH_VARARGS, NULL},
+ { (char *)"duplexT_j_get", _wrap_duplexT_j_get, METH_VARARGS, NULL},
+ { (char *)"duplexT_structure_set", _wrap_duplexT_structure_set, METH_VARARGS, NULL},
+ { (char *)"duplexT_structure_get", _wrap_duplexT_structure_get, METH_VARARGS, NULL},
+ { (char *)"duplexT_energy_set", _wrap_duplexT_energy_set, METH_VARARGS, NULL},
+ { (char *)"duplexT_energy_get", _wrap_duplexT_energy_get, METH_VARARGS, NULL},
+ { (char *)"new_duplexT", _wrap_new_duplexT, METH_VARARGS, NULL},
+ { (char *)"delete_duplexT", _wrap_delete_duplexT, METH_VARARGS, NULL},
+ { (char *)"duplexT_swigregister", duplexT_swigregister, METH_VARARGS, NULL},
+ { (char *)"duplexfold", _wrap_duplexfold, METH_VARARGS, NULL},
+ { (char *)"aliduplexfold", _wrap_aliduplexfold, METH_VARARGS, NULL},
+ { (char *)"encode_seq", _wrap_encode_seq, METH_VARARGS, NULL},
+ { (char *)"Lfold", _wrap_Lfold, METH_VARARGS, NULL},
+ { (char *)"Lfoldz", _wrap_Lfoldz, METH_VARARGS, NULL},
+ { (char *)"aliLfold", _wrap_aliLfold, METH_VARARGS, NULL},
+ { (char *)"simple_xy_coordinates", _wrap_simple_xy_coordinates, METH_VARARGS, NULL},
+ { (char *)"simple_circplot_coordinates", _wrap_simple_circplot_coordinates, METH_VARARGS, NULL},
+ { (char *)"PS_rna_plot_snoop_a", _wrap_PS_rna_plot_snoop_a, METH_VARARGS, NULL},
+ { (char *)"PS_rna_plot", _wrap_PS_rna_plot, METH_VARARGS, NULL},
+ { (char *)"PS_rna_plot_a", _wrap_PS_rna_plot_a, METH_VARARGS, NULL},
+ { (char *)"PS_rna_plot_a_gquad", _wrap_PS_rna_plot_a_gquad, METH_VARARGS, NULL},
+ { (char *)"gmlRNA", _wrap_gmlRNA, METH_VARARGS, NULL},
+ { (char *)"ssv_rna_plot", _wrap_ssv_rna_plot, METH_VARARGS, NULL},
+ { (char *)"svg_rna_plot", _wrap_svg_rna_plot, METH_VARARGS, NULL},
+ { (char *)"xrna_plot", _wrap_xrna_plot, METH_VARARGS, NULL},
+ { (char *)"PS_color_dot_plot", _wrap_PS_color_dot_plot, METH_VARARGS, NULL},
+ { (char *)"PS_color_dot_plot_turn", _wrap_PS_color_dot_plot_turn, METH_VARARGS, NULL},
+ { (char *)"PS_dot_plot_list", _wrap_PS_dot_plot_list, METH_VARARGS, NULL},
+ { (char *)"PS_dot_plot_turn", _wrap_PS_dot_plot_turn, METH_VARARGS, NULL},
+ { (char *)"PS_color_aln", _wrap_PS_color_aln, METH_VARARGS, NULL},
+ { (char *)"aliPS_color_aln", _wrap_aliPS_color_aln, METH_VARARGS, NULL},
+ { (char *)"PS_dot_plot", _wrap_PS_dot_plot, METH_VARARGS, NULL},
+ { (char *)"find_saddle", _wrap_find_saddle, METH_VARARGS, NULL},
+ { (char *)"get_path", _wrap_get_path, METH_VARARGS, NULL},
+ { (char *)"free_path", _wrap_free_path, METH_VARARGS, NULL},
+ { NULL, NULL, 0, NULL }
+};
+
+
+/* -------- TYPE CONVERSION AND EQUIVALENCE RULES (BEGIN) -------- */
+
+static void *_p_p_floatArrayTo_p_p_float(void *x, int *SWIGUNUSEDPARM(newmemory)) {
+ return (void *)((float **) ((floatArray **) x));
+}
+static void *_p_floatArrayTo_p_float(void *x, int *SWIGUNUSEDPARM(newmemory)) {
+ return (void *)((float *) ((floatArray *) x));
+}
+static void *_p_intArrayTo_p_int(void *x, int *SWIGUNUSEDPARM(newmemory)) {
+ return (void *)((int *) ((intArray *) x));
+}
+static void *_p_doubleArrayTo_p_double(void *x, int *SWIGUNUSEDPARM(newmemory)) {
+ return (void *)((double *) ((doubleArray *) x));
+}
+static void *_p_p_doubleArrayTo_p_p_double(void *x, int *SWIGUNUSEDPARM(newmemory)) {
+ return (void *)((double **) ((doubleArray **) x));
+}
+static void *_p_p_intArrayTo_p_p_int(void *x, int *SWIGUNUSEDPARM(newmemory)) {
+ return (void *)((int **) ((intArray **) x));
+}
+static swig_type_info _swigt__p_COORDINATE = {"_p_COORDINATE", "COORDINATE *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_ConcEnt = {"_p_ConcEnt", "ConcEnt *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_FILE = {"_p_FILE", "FILE *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_SOLUTION = {"_p_SOLUTION", "SOLUTION *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_Tree = {"_p_Tree", "Tree *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_bondT = {"_p_bondT", "bondT *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_char = {"_p_char", "char *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_cofoldF = {"_p_cofoldF", "cofoldF *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_cpair = {"_p_cpair", "cpair *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_double = {"_p_double", "double *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_doubleArray = {"_p_doubleArray", "doubleArray *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_duplexT = {"_p_duplexT", "duplexT *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_float = {"_p_float", "float *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_floatArray = {"_p_floatArray", "floatArray *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_int = {"_p_int", "int *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_intArray = {"_p_intArray", "intArray *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_model_detailsT = {"_p_model_detailsT", "model_detailsT *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_char = {"_p_p_char", "char **", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_double = {"_p_p_double", "double **", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_doubleArray = {"_p_p_doubleArray", 0, 0, 0, 0, 0};
+static swig_type_info _swigt__p_p_float = {"_p_p_float", "float **", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_floatArray = {"_p_p_floatArray", 0, 0, 0, 0, 0};
+static swig_type_info _swigt__p_p_int = {"_p_p_int", "int **", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_intArray = {"_p_p_intArray", 0, 0, 0, 0, 0};
+static swig_type_info _swigt__p_p_p_char = {"_p_p_p_char", "char ***", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_p_short = {"_p_p_p_short", "short ***", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_p_unsigned_short = {"_p_p_p_unsigned_short", "unsigned short ***", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_paramT = {"_p_p_paramT", "paramT **", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_plist = {"_p_p_plist", "plist **", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_short = {"_p_p_short", "short **", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_p_void = {"_p_p_void", "void **", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_paramT = {"_p_paramT", "paramT *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_path_t = {"_p_path_t", "path_t *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_pf_paramT = {"_p_pf_paramT", "pf_paramT *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_plist = {"_p_plist", "plist *|struct plist *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_short = {"_p_short", "short *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_swString = {"_p_swString", "swString *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_unsigned_int = {"_p_unsigned_int", "unsigned int *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_unsigned_short = {"_p_unsigned_short", "unsigned short *", 0, 0, (void*)0, 0};
+static swig_type_info _swigt__p_void = {"_p_void", "void *", 0, 0, (void*)0, 0};
+
+static swig_type_info *swig_type_initial[] = {
+ &_swigt__p_COORDINATE,
+ &_swigt__p_ConcEnt,
+ &_swigt__p_FILE,
+ &_swigt__p_SOLUTION,
+ &_swigt__p_Tree,
+ &_swigt__p_bondT,
+ &_swigt__p_char,
+ &_swigt__p_cofoldF,
+ &_swigt__p_cpair,
+ &_swigt__p_double,
+ &_swigt__p_doubleArray,
+ &_swigt__p_duplexT,
+ &_swigt__p_float,
+ &_swigt__p_floatArray,
+ &_swigt__p_int,
+ &_swigt__p_intArray,
+ &_swigt__p_model_detailsT,
+ &_swigt__p_p_char,
+ &_swigt__p_p_double,
+ &_swigt__p_p_doubleArray,
+ &_swigt__p_p_float,
+ &_swigt__p_p_floatArray,
+ &_swigt__p_p_int,
+ &_swigt__p_p_intArray,
+ &_swigt__p_p_p_char,
+ &_swigt__p_p_p_short,
+ &_swigt__p_p_p_unsigned_short,
+ &_swigt__p_p_paramT,
+ &_swigt__p_p_plist,
+ &_swigt__p_p_short,
+ &_swigt__p_p_void,
+ &_swigt__p_paramT,
+ &_swigt__p_path_t,
+ &_swigt__p_pf_paramT,
+ &_swigt__p_plist,
+ &_swigt__p_short,
+ &_swigt__p_swString,
+ &_swigt__p_unsigned_int,
+ &_swigt__p_unsigned_short,
+ &_swigt__p_void,
+};
+
+static swig_cast_info _swigc__p_COORDINATE[] = { {&_swigt__p_COORDINATE, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_ConcEnt[] = { {&_swigt__p_ConcEnt, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_FILE[] = { {&_swigt__p_FILE, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_SOLUTION[] = { {&_swigt__p_SOLUTION, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_Tree[] = { {&_swigt__p_Tree, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_bondT[] = { {&_swigt__p_bondT, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_char[] = { {&_swigt__p_char, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_cofoldF[] = { {&_swigt__p_cofoldF, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_cpair[] = { {&_swigt__p_cpair, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_double[] = { {&_swigt__p_doubleArray, _p_doubleArrayTo_p_double, 0, 0}, {&_swigt__p_double, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_doubleArray[] = { {&_swigt__p_doubleArray, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_duplexT[] = { {&_swigt__p_duplexT, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_float[] = { {&_swigt__p_float, 0, 0, 0}, {&_swigt__p_floatArray, _p_floatArrayTo_p_float, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_floatArray[] = { {&_swigt__p_floatArray, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_int[] = { {&_swigt__p_intArray, _p_intArrayTo_p_int, 0, 0}, {&_swigt__p_int, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_intArray[] = { {&_swigt__p_intArray, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_model_detailsT[] = { {&_swigt__p_model_detailsT, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_char[] = { {&_swigt__p_p_char, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_doubleArray[] = {{&_swigt__p_p_doubleArray, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_double[] = { {&_swigt__p_p_doubleArray, _p_p_doubleArrayTo_p_p_double, 0, 0}, {&_swigt__p_p_double, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_floatArray[] = {{&_swigt__p_p_floatArray, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_float[] = { {&_swigt__p_p_float, 0, 0, 0}, {&_swigt__p_p_floatArray, _p_p_floatArrayTo_p_p_float, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_intArray[] = {{&_swigt__p_p_intArray, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_int[] = { {&_swigt__p_p_intArray, _p_p_intArrayTo_p_p_int, 0, 0}, {&_swigt__p_p_int, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_p_char[] = { {&_swigt__p_p_p_char, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_p_short[] = { {&_swigt__p_p_p_short, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_p_unsigned_short[] = { {&_swigt__p_p_p_unsigned_short, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_paramT[] = { {&_swigt__p_p_paramT, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_plist[] = { {&_swigt__p_p_plist, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_short[] = { {&_swigt__p_p_short, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_p_void[] = { {&_swigt__p_p_void, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_paramT[] = { {&_swigt__p_paramT, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_path_t[] = { {&_swigt__p_path_t, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_pf_paramT[] = { {&_swigt__p_pf_paramT, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_plist[] = { {&_swigt__p_plist, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_short[] = { {&_swigt__p_short, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_swString[] = { {&_swigt__p_swString, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_unsigned_int[] = { {&_swigt__p_unsigned_int, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_unsigned_short[] = { {&_swigt__p_unsigned_short, 0, 0, 0},{0, 0, 0, 0}};
+static swig_cast_info _swigc__p_void[] = { {&_swigt__p_void, 0, 0, 0},{0, 0, 0, 0}};
+
+static swig_cast_info *swig_cast_initial[] = {
+ _swigc__p_COORDINATE,
+ _swigc__p_ConcEnt,
+ _swigc__p_FILE,
+ _swigc__p_SOLUTION,
+ _swigc__p_Tree,
+ _swigc__p_bondT,
+ _swigc__p_char,
+ _swigc__p_cofoldF,
+ _swigc__p_cpair,
+ _swigc__p_double,
+ _swigc__p_doubleArray,
+ _swigc__p_duplexT,
+ _swigc__p_float,
+ _swigc__p_floatArray,
+ _swigc__p_int,
+ _swigc__p_intArray,
+ _swigc__p_model_detailsT,
+ _swigc__p_p_char,
+ _swigc__p_p_double,
+ _swigc__p_p_doubleArray,
+ _swigc__p_p_float,
+ _swigc__p_p_floatArray,
+ _swigc__p_p_int,
+ _swigc__p_p_intArray,
+ _swigc__p_p_p_char,
+ _swigc__p_p_p_short,
+ _swigc__p_p_p_unsigned_short,
+ _swigc__p_p_paramT,
+ _swigc__p_p_plist,
+ _swigc__p_p_short,
+ _swigc__p_p_void,
+ _swigc__p_paramT,
+ _swigc__p_path_t,
+ _swigc__p_pf_paramT,
+ _swigc__p_plist,
+ _swigc__p_short,
+ _swigc__p_swString,
+ _swigc__p_unsigned_int,
+ _swigc__p_unsigned_short,
+ _swigc__p_void,
+};
+
+
+/* -------- TYPE CONVERSION AND EQUIVALENCE RULES (END) -------- */
+
+static swig_const_info swig_const_table[] = {
+{0, 0, 0, 0.0, 0, 0}};
+
+#ifdef __cplusplus
+}
+#endif
+/* -----------------------------------------------------------------------------
+ * Type initialization:
+ * This problem is tough by the requirement that no dynamic
+ * memory is used. Also, since swig_type_info structures store pointers to
+ * swig_cast_info structures and swig_cast_info structures store pointers back
+ * to swig_type_info structures, we need some lookup code at initialization.
+ * The idea is that swig generates all the structures that are needed.
+ * The runtime then collects these partially filled structures.
+ * The SWIG_InitializeModule function takes these initial arrays out of
+ * swig_module, and does all the lookup, filling in the swig_module.types
+ * array with the correct data and linking the correct swig_cast_info
+ * structures together.
+ *
+ * The generated swig_type_info structures are assigned staticly to an initial
+ * array. We just loop through that array, and handle each type individually.
+ * First we lookup if this type has been already loaded, and if so, use the
+ * loaded structure instead of the generated one. Then we have to fill in the
+ * cast linked list. The cast data is initially stored in something like a
+ * two-dimensional array. Each row corresponds to a type (there are the same
+ * number of rows as there are in the swig_type_initial array). Each entry in
+ * a column is one of the swig_cast_info structures for that type.
+ * The cast_initial array is actually an array of arrays, because each row has
+ * a variable number of columns. So to actually build the cast linked list,
+ * we find the array of casts associated with the type, and loop through it
+ * adding the casts to the list. The one last trick we need to do is making
+ * sure the type pointer in the swig_cast_info struct is correct.
+ *
+ * First off, we lookup the cast->type name to see if it is already loaded.
+ * There are three cases to handle:
+ * 1) If the cast->type has already been loaded AND the type we are adding
+ * casting info to has not been loaded (it is in this module), THEN we
+ * replace the cast->type pointer with the type pointer that has already
+ * been loaded.
+ * 2) If BOTH types (the one we are adding casting info to, and the
+ * cast->type) are loaded, THEN the cast info has already been loaded by
+ * the previous module so we just ignore it.
+ * 3) Finally, if cast->type has not already been loaded, then we add that
+ * swig_cast_info to the linked list (because the cast->type) pointer will
+ * be correct.
+ * ----------------------------------------------------------------------------- */
+
+#ifdef __cplusplus
+extern "C" {
+#if 0
+} /* c-mode */
+#endif
+#endif
+
+#if 0
+#define SWIGRUNTIME_DEBUG
+#endif
+
+
+SWIGRUNTIME void
+SWIG_InitializeModule(void *clientdata) {
+ size_t i;
+ swig_module_info *module_head, *iter;
+ int found, init;
+ (void *)clientdata;
+
+ /* check to see if the circular list has been setup, if not, set it up */
+ if (swig_module.next==0) {
+ /* Initialize the swig_module */
+ swig_module.type_initial = swig_type_initial;
+ swig_module.cast_initial = swig_cast_initial;
+ swig_module.next = &swig_module;
+ init = 1;
+ } else {
+ init = 0;
+ }
+
+ /* Try and load any already created modules */
+ module_head = SWIG_GetModule(clientdata);
+ if (!module_head) {
+ /* This is the first module loaded for this interpreter */
+ /* so set the swig module into the interpreter */
+ SWIG_SetModule(clientdata, &swig_module);
+ module_head = &swig_module;
+ } else {
+ /* the interpreter has loaded a SWIG module, but has it loaded this one? */
+ found=0;
+ iter=module_head;
+ do {
+ if (iter==&swig_module) {
+ found=1;
+ break;
+ }
+ iter=iter->next;
+ } while (iter!= module_head);
+
+ /* if the is found in the list, then all is done and we may leave */
+ if (found) return;
+ /* otherwise we must add out module into the list */
+ swig_module.next = module_head->next;
+ module_head->next = &swig_module;
+ }
+
+ /* When multiple interpeters are used, a module could have already been initialized in
+ a different interpreter, but not yet have a pointer in this interpreter.
+ In this case, we do not want to continue adding types... everything should be
+ set up already */
+ if (init == 0) return;
+
+ /* Now work on filling in swig_module.types */
+#ifdef SWIGRUNTIME_DEBUG
+ printf("SWIG_InitializeModule: size %d\n", swig_module.size);
+#endif
+ for (i = 0; i < swig_module.size; ++i) {
+ swig_type_info *type = 0;
+ swig_type_info *ret;
+ swig_cast_info *cast;
+
+#ifdef SWIGRUNTIME_DEBUG
+ printf("SWIG_InitializeModule: type %d %s\n", i, swig_module.type_initial[i]->name);
+#endif
+
+ /* if there is another module already loaded */
+ if (swig_module.next != &swig_module) {
+ type = SWIG_MangledTypeQueryModule(swig_module.next, &swig_module, swig_module.type_initial[i]->name);
+ }
+ if (type) {
+ /* Overwrite clientdata field */
+#ifdef SWIGRUNTIME_DEBUG
+ printf("SWIG_InitializeModule: found type %s\n", type->name);
+#endif
+ if (swig_module.type_initial[i]->clientdata) {
+ type->clientdata = swig_module.type_initial[i]->clientdata;
+#ifdef SWIGRUNTIME_DEBUG
+ printf("SWIG_InitializeModule: found and overwrite type %s \n", type->name);
+#endif
+ }
+ } else {
+ type = swig_module.type_initial[i];
+ }
+
+ /* Insert casting types */
+ cast = swig_module.cast_initial[i];
+ while (cast->type) {
+ /* Don't need to add information already in the list */
+ ret = 0;
+#ifdef SWIGRUNTIME_DEBUG
+ printf("SWIG_InitializeModule: look cast %s\n", cast->type->name);
+#endif
+ if (swig_module.next != &swig_module) {
+ ret = SWIG_MangledTypeQueryModule(swig_module.next, &swig_module, cast->type->name);
+#ifdef SWIGRUNTIME_DEBUG
+ if (ret) printf("SWIG_InitializeModule: found cast %s\n", ret->name);
+#endif
+ }
+ if (ret) {
+ if (type == swig_module.type_initial[i]) {
+#ifdef SWIGRUNTIME_DEBUG
+ printf("SWIG_InitializeModule: skip old type %s\n", ret->name);
+#endif
+ cast->type = ret;
+ ret = 0;
+ } else {
+ /* Check for casting already in the list */
+ swig_cast_info *ocast = SWIG_TypeCheck(ret->name, type);
+#ifdef SWIGRUNTIME_DEBUG
+ if (ocast) printf("SWIG_InitializeModule: skip old cast %s\n", ret->name);
+#endif
+ if (!ocast) ret = 0;
+ }
+ }
+
+ if (!ret) {
+#ifdef SWIGRUNTIME_DEBUG
+ printf("SWIG_InitializeModule: adding cast %s\n", cast->type->name);
+#endif
+ if (type->cast) {
+ type->cast->prev = cast;
+ cast->next = type->cast;
+ }
+ type->cast = cast;
+ }
+ cast++;
+ }
+ /* Set entry in modules->types array equal to the type */
+ swig_module.types[i] = type;
+ }
+ swig_module.types[i] = 0;
+
+#ifdef SWIGRUNTIME_DEBUG
+ printf("**** SWIG_InitializeModule: Cast List ******\n");
+ for (i = 0; i < swig_module.size; ++i) {
+ int j = 0;
+ swig_cast_info *cast = swig_module.cast_initial[i];
+ printf("SWIG_InitializeModule: type %d %s\n", i, swig_module.type_initial[i]->name);
+ while (cast->type) {
+ printf("SWIG_InitializeModule: cast type %s\n", cast->type->name);
+ cast++;
+ ++j;
+ }
+ printf("---- Total casts: %d\n",j);
+ }
+ printf("**** SWIG_InitializeModule: Cast List ******\n");
+#endif
+}
+
+/* This function will propagate the clientdata field of type to
+* any new swig_type_info structures that have been added into the list
+* of equivalent types. It is like calling
+* SWIG_TypeClientData(type, clientdata) a second time.
+*/
+SWIGRUNTIME void
+SWIG_PropagateClientData(void) {
+ size_t i;
+ swig_cast_info *equiv;
+ static int init_run = 0;
+
+ if (init_run) return;
+ init_run = 1;
+
+ for (i = 0; i < swig_module.size; i++) {
+ if (swig_module.types[i]->clientdata) {
+ equiv = swig_module.types[i]->cast;
+ while (equiv) {
+ if (!equiv->converter) {
+ if (equiv->type && !equiv->type->clientdata)
+ SWIG_TypeClientData(equiv->type, swig_module.types[i]->clientdata);
+ }
+ equiv = equiv->next;
+ }
+ }
+ }
+}
+
+#ifdef __cplusplus
+#if 0
+{
+ /* c-mode */
+#endif
+}
+#endif
+
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+ /* Python-specific SWIG API */
+#define SWIG_newvarlink() SWIG_Python_newvarlink()
+#define SWIG_addvarlink(p, name, get_attr, set_attr) SWIG_Python_addvarlink(p, name, get_attr, set_attr)
+#define SWIG_InstallConstants(d, constants) SWIG_Python_InstallConstants(d, constants)
+
+ /* -----------------------------------------------------------------------------
+ * global variable support code.
+ * ----------------------------------------------------------------------------- */
+
+ typedef struct swig_globalvar {
+ char *name; /* Name of global variable */
+ PyObject *(*get_attr)(void); /* Return the current value */
+ int (*set_attr)(PyObject *); /* Set the value */
+ struct swig_globalvar *next;
+ } swig_globalvar;
+
+ typedef struct swig_varlinkobject {
+ PyObject_HEAD
+ swig_globalvar *vars;
+ } swig_varlinkobject;
+
+ SWIGINTERN PyObject *
+ swig_varlink_repr(swig_varlinkobject *SWIGUNUSEDPARM(v)) {
+#if PY_VERSION_HEX >= 0x03000000
+ return PyUnicode_InternFromString("<Swig global variables>");
+#else
+ return PyString_FromString("<Swig global variables>");
+#endif
+ }
+
+ SWIGINTERN PyObject *
+ swig_varlink_str(swig_varlinkobject *v) {
+#if PY_VERSION_HEX >= 0x03000000
+ PyObject *str = PyUnicode_InternFromString("(");
+ PyObject *tail;
+ PyObject *joined;
+ swig_globalvar *var;
+ for (var = v->vars; var; var=var->next) {
+ tail = PyUnicode_FromString(var->name);
+ joined = PyUnicode_Concat(str, tail);
+ Py_DecRef(str);
+ Py_DecRef(tail);
+ str = joined;
+ if (var->next) {
+ tail = PyUnicode_InternFromString(", ");
+ joined = PyUnicode_Concat(str, tail);
+ Py_DecRef(str);
+ Py_DecRef(tail);
+ str = joined;
+ }
+ }
+ tail = PyUnicode_InternFromString(")");
+ joined = PyUnicode_Concat(str, tail);
+ Py_DecRef(str);
+ Py_DecRef(tail);
+ str = joined;
+#else
+ PyObject *str = PyString_FromString("(");
+ swig_globalvar *var;
+ for (var = v->vars; var; var=var->next) {
+ PyString_ConcatAndDel(&str,PyString_FromString(var->name));
+ if (var->next) PyString_ConcatAndDel(&str,PyString_FromString(", "));
+ }
+ PyString_ConcatAndDel(&str,PyString_FromString(")"));
+#endif
+ return str;
+ }
+
+ SWIGINTERN int
+ swig_varlink_print(swig_varlinkobject *v, FILE *fp, int SWIGUNUSEDPARM(flags)) {
+ char *tmp;
+ PyObject *str = swig_varlink_str(v);
+ fprintf(fp,"Swig global variables ");
+ fprintf(fp,"%s\n", tmp = SWIG_Python_str_AsChar(str));
+ SWIG_Python_str_DelForPy3(tmp);
+ Py_DECREF(str);
+ return 0;
+ }
+
+ SWIGINTERN void
+ swig_varlink_dealloc(swig_varlinkobject *v) {
+ swig_globalvar *var = v->vars;
+ while (var) {
+ swig_globalvar *n = var->next;
+ free(var->name);
+ free(var);
+ var = n;
+ }
+ }
+
+ SWIGINTERN PyObject *
+ swig_varlink_getattr(swig_varlinkobject *v, char *n) {
+ PyObject *res = NULL;
+ swig_globalvar *var = v->vars;
+ while (var) {
+ if (strcmp(var->name,n) == 0) {
+ res = (*var->get_attr)();
+ break;
+ }
+ var = var->next;
+ }
+ if (res == NULL && !PyErr_Occurred()) {
+ PyErr_SetString(PyExc_NameError,"Unknown C global variable");
+ }
+ return res;
+ }
+
+ SWIGINTERN int
+ swig_varlink_setattr(swig_varlinkobject *v, char *n, PyObject *p) {
+ int res = 1;
+ swig_globalvar *var = v->vars;
+ while (var) {
+ if (strcmp(var->name,n) == 0) {
+ res = (*var->set_attr)(p);
+ break;
+ }
+ var = var->next;
+ }
+ if (res == 1 && !PyErr_Occurred()) {
+ PyErr_SetString(PyExc_NameError,"Unknown C global variable");
+ }
+ return res;
+ }
+
+ SWIGINTERN PyTypeObject*
+ swig_varlink_type(void) {
+ static char varlink__doc__[] = "Swig var link object";
+ static PyTypeObject varlink_type;
+ static int type_init = 0;
+ if (!type_init) {
+ const PyTypeObject tmp = {
+ /* PyObject header changed in Python 3 */
+#if PY_VERSION_HEX >= 0x03000000
+ PyVarObject_HEAD_INIT(NULL, 0)
+#else
+ PyObject_HEAD_INIT(NULL)
+ 0, /* ob_size */
+#endif
+ (char *)"swigvarlink", /* tp_name */
+ sizeof(swig_varlinkobject), /* tp_basicsize */
+ 0, /* tp_itemsize */
+ (destructor) swig_varlink_dealloc, /* tp_dealloc */
+ (printfunc) swig_varlink_print, /* tp_print */
+ (getattrfunc) swig_varlink_getattr, /* tp_getattr */
+ (setattrfunc) swig_varlink_setattr, /* tp_setattr */
+ 0, /* tp_compare */
+ (reprfunc) swig_varlink_repr, /* tp_repr */
+ 0, /* tp_as_number */
+ 0, /* tp_as_sequence */
+ 0, /* tp_as_mapping */
+ 0, /* tp_hash */
+ 0, /* tp_call */
+ (reprfunc) swig_varlink_str, /* tp_str */
+ 0, /* tp_getattro */
+ 0, /* tp_setattro */
+ 0, /* tp_as_buffer */
+ 0, /* tp_flags */
+ varlink__doc__, /* tp_doc */
+ 0, /* tp_traverse */
+ 0, /* tp_clear */
+ 0, /* tp_richcompare */
+ 0, /* tp_weaklistoffset */
+#if PY_VERSION_HEX >= 0x02020000
+ 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0, /* tp_iter -> tp_weaklist */
+#endif
+#if PY_VERSION_HEX >= 0x02030000
+ 0, /* tp_del */
+#endif
+#if PY_VERSION_HEX >= 0x02060000
+ 0, /* tp_version */
+#endif
+#ifdef COUNT_ALLOCS
+ 0,0,0,0 /* tp_alloc -> tp_next */
+#endif
+ };
+ varlink_type = tmp;
+ type_init = 1;
+#if PY_VERSION_HEX < 0x02020000
+ varlink_type.ob_type = &PyType_Type;
+#else
+ if (PyType_Ready(&varlink_type) < 0)
+ return NULL;
+#endif
+ }
+ return &varlink_type;
+ }
+
+ /* Create a variable linking object for use later */
+ SWIGINTERN PyObject *
+ SWIG_Python_newvarlink(void) {
+ swig_varlinkobject *result = PyObject_NEW(swig_varlinkobject, swig_varlink_type());
+ if (result) {
+ result->vars = 0;
+ }
+ return ((PyObject*) result);
+ }
+
+ SWIGINTERN void
+ SWIG_Python_addvarlink(PyObject *p, char *name, PyObject *(*get_attr)(void), int (*set_attr)(PyObject *p)) {
+ swig_varlinkobject *v = (swig_varlinkobject *) p;
+ swig_globalvar *gv = (swig_globalvar *) malloc(sizeof(swig_globalvar));
+ if (gv) {
+ size_t size = strlen(name)+1;
+ gv->name = (char *)malloc(size);
+ if (gv->name) {
+ strncpy(gv->name,name,size);
+ gv->get_attr = get_attr;
+ gv->set_attr = set_attr;
+ gv->next = v->vars;
+ }
+ }
+ v->vars = gv;
+ }
+
+ SWIGINTERN PyObject *
+ SWIG_globals(void) {
+ static PyObject *_SWIG_globals = 0;
+ if (!_SWIG_globals) _SWIG_globals = SWIG_newvarlink();
+ return _SWIG_globals;
+ }
+
+ /* -----------------------------------------------------------------------------
+ * constants/methods manipulation
+ * ----------------------------------------------------------------------------- */
+
+ /* Install Constants */
+ SWIGINTERN void
+ SWIG_Python_InstallConstants(PyObject *d, swig_const_info constants[]) {
+ PyObject *obj = 0;
+ size_t i;
+ for (i = 0; constants[i].type; ++i) {
+ switch(constants[i].type) {
+ case SWIG_PY_POINTER:
+ obj = SWIG_InternalNewPointerObj(constants[i].pvalue, *(constants[i]).ptype,0);
+ break;
+ case SWIG_PY_BINARY:
+ obj = SWIG_NewPackedObj(constants[i].pvalue, constants[i].lvalue, *(constants[i].ptype));
+ break;
+ default:
+ obj = 0;
+ break;
+ }
+ if (obj) {
+ PyDict_SetItemString(d, constants[i].name, obj);
+ Py_DECREF(obj);
+ }
+ }
+ }
+
+ /* -----------------------------------------------------------------------------*/
+ /* Fix SwigMethods to carry the callback ptrs when needed */
+ /* -----------------------------------------------------------------------------*/
+
+ SWIGINTERN void
+ SWIG_Python_FixMethods(PyMethodDef *methods,
+ swig_const_info *const_table,
+ swig_type_info **types,
+ swig_type_info **types_initial) {
+ size_t i;
+ for (i = 0; methods[i].ml_name; ++i) {
+ const char *c = methods[i].ml_doc;
+ if (c && (c = strstr(c, "swig_ptr: "))) {
+ int j;
+ swig_const_info *ci = 0;
+ const char *name = c + 10;
+ for (j = 0; const_table[j].type; ++j) {
+ if (strncmp(const_table[j].name, name,
+ strlen(const_table[j].name)) == 0) {
+ ci = &(const_table[j]);
+ break;
+ }
+ }
+ if (ci) {
+ void *ptr = (ci->type == SWIG_PY_POINTER) ? ci->pvalue : 0;
+ if (ptr) {
+ size_t shift = (ci->ptype) - types;
+ swig_type_info *ty = types_initial[shift];
+ size_t ldoc = (c - methods[i].ml_doc);
+ size_t lptr = strlen(ty->name)+2*sizeof(void*)+2;
+ char *ndoc = (char*)malloc(ldoc + lptr + 10);
+ if (ndoc) {
+ char *buff = ndoc;
+ strncpy(buff, methods[i].ml_doc, ldoc);
+ buff += ldoc;
+ strncpy(buff, "swig_ptr: ", 10);
+ buff += 10;
+ SWIG_PackVoidPtr(buff, ptr, ty->name, lptr);
+ methods[i].ml_doc = ndoc;
+ }
+ }
+ }
+ }
+ }
+ }
+
+#ifdef __cplusplus
+}
+#endif
+
+/* -----------------------------------------------------------------------------*
+ * Partial Init method
+ * -----------------------------------------------------------------------------*/
+
+#ifdef __cplusplus
+extern "C"
+#endif
+
+SWIGEXPORT
+#if PY_VERSION_HEX >= 0x03000000
+PyObject*
+#else
+void
+#endif
+SWIG_init(void) {
+ PyObject *m, *d, *md;
+#if PY_VERSION_HEX >= 0x03000000
+ static struct PyModuleDef SWIG_module = {
+# if PY_VERSION_HEX >= 0x03020000
+ PyModuleDef_HEAD_INIT,
+# else
+ {
+ PyObject_HEAD_INIT(NULL)
+ NULL, /* m_init */
+ 0, /* m_index */
+ NULL, /* m_copy */
+ },
+# endif
+ (char *) SWIG_name,
+ NULL,
+ -1,
+ SwigMethods,
+ NULL,
+ NULL,
+ NULL,
+ NULL
+ };
+#endif
+
+#if defined(SWIGPYTHON_BUILTIN)
+ static SwigPyClientData SwigPyObject_clientdata = {
+ 0, 0, 0, 0, 0, 0, 0
+ };
+ static PyGetSetDef this_getset_def = {
+ (char *)"this", &SwigPyBuiltin_ThisClosure, NULL, NULL, NULL
+ };
+ static SwigPyGetSet thisown_getset_closure = {
+ (PyCFunction) SwigPyObject_own,
+ (PyCFunction) SwigPyObject_own
+ };
+ static PyGetSetDef thisown_getset_def = {
+ (char *)"thisown", SwigPyBuiltin_GetterClosure, SwigPyBuiltin_SetterClosure, NULL, &thisown_getset_closure
+ };
+ PyObject *metatype_args;
+ PyTypeObject *builtin_pytype;
+ int builtin_base_count;
+ swig_type_info *builtin_basetype;
+ PyObject *tuple;
+ PyGetSetDescrObject *static_getset;
+ PyTypeObject *metatype;
+ SwigPyClientData *cd;
+ PyObject *public_interface, *public_symbol;
+ PyObject *this_descr;
+ PyObject *thisown_descr;
+ int i;
+
+ (void)builtin_pytype;
+ (void)builtin_base_count;
+ (void)builtin_basetype;
+ (void)tuple;
+ (void)static_getset;
+
+ /* metatype is used to implement static member variables. */
+ metatype_args = Py_BuildValue("(s(O){})", "SwigPyObjectType", &PyType_Type);
+ assert(metatype_args);
+ metatype = (PyTypeObject *) PyType_Type.tp_call((PyObject *) &PyType_Type, metatype_args, NULL);
+ assert(metatype);
+ Py_DECREF(metatype_args);
+ metatype->tp_setattro = (setattrofunc) &SwigPyObjectType_setattro;
+ assert(PyType_Ready(metatype) >= 0);
+#endif
+
+ /* Fix SwigMethods to carry the callback ptrs when needed */
+ SWIG_Python_FixMethods(SwigMethods, swig_const_table, swig_types, swig_type_initial);
+
+#if PY_VERSION_HEX >= 0x03000000
+ m = PyModule_Create(&SWIG_module);
+#else
+ m = Py_InitModule((char *) SWIG_name, SwigMethods);
+#endif
+ md = d = PyModule_GetDict(m);
+ (void)md;
+
+ SWIG_InitializeModule(0);
+
+#ifdef SWIGPYTHON_BUILTIN
+ SwigPyObject_stype = SWIG_MangledTypeQuery("_p_SwigPyObject");
+ assert(SwigPyObject_stype);
+ cd = (SwigPyClientData*) SwigPyObject_stype->clientdata;
+ if (!cd) {
+ SwigPyObject_stype->clientdata = &SwigPyObject_clientdata;
+ SwigPyObject_clientdata.pytype = SwigPyObject_TypeOnce();
+ } else if (SwigPyObject_TypeOnce()->tp_basicsize != cd->pytype->tp_basicsize) {
+ PyErr_SetString(PyExc_RuntimeError, "Import error: attempted to load two incompatible swig-generated modules.");
+# if PY_VERSION_HEX >= 0x03000000
+ return NULL;
+# else
+ return;
+# endif
+ }
+
+ /* All objects have a 'this' attribute */
+ this_descr = PyDescr_NewGetSet(SwigPyObject_type(), &this_getset_def);
+ (void)this_descr;
+
+ /* All objects have a 'thisown' attribute */
+ thisown_descr = PyDescr_NewGetSet(SwigPyObject_type(), &thisown_getset_def);
+ (void)thisown_descr;
+
+ public_interface = PyList_New(0);
+ public_symbol = 0;
+ (void)public_symbol;
+
+ PyDict_SetItemString(md, "__all__", public_interface);
+ Py_DECREF(public_interface);
+ for (i = 0; SwigMethods[i].ml_name != NULL; ++i)
+ SwigPyBuiltin_AddPublicSymbol(public_interface, SwigMethods[i].ml_name);
+ for (i = 0; swig_const_table[i].name != 0; ++i)
+ SwigPyBuiltin_AddPublicSymbol(public_interface, swig_const_table[i].name);
+#endif
+
+ SWIG_InstallConstants(d,swig_const_table);
+
+ SWIG_Python_SetConstant(d, "VERSION",SWIG_From_double((double)(0.3)));
+ PyDict_SetItemString(md,(char*)"cvar", SWIG_globals());
+ SWIG_addvarlink(SWIG_globals(),(char*)"logML",Swig_var_logML_get, Swig_var_logML_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"uniq_ML",Swig_var_uniq_ML_get, Swig_var_uniq_ML_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"cut_point",Swig_var_cut_point_get, Swig_var_cut_point_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"eos_debug",Swig_var_eos_debug_get, Swig_var_eos_debug_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"st_back",Swig_var_st_back_get, Swig_var_st_back_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"mirnatog",Swig_var_mirnatog_get, Swig_var_mirnatog_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"F_monomer",Swig_var_F_monomer_get, Swig_var_F_monomer_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"symbolset",Swig_var_symbolset_get, Swig_var_symbolset_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"final_cost",Swig_var_final_cost_get, Swig_var_final_cost_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"give_up",Swig_var_give_up_get, Swig_var_give_up_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"inv_verbose",Swig_var_inv_verbose_get, Swig_var_inv_verbose_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"fold_constrained",Swig_var_fold_constrained_get, Swig_var_fold_constrained_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"noLonelyPairs",Swig_var_noLonelyPairs_get, Swig_var_noLonelyPairs_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"dangles",Swig_var_dangles_get, Swig_var_dangles_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"noGU",Swig_var_noGU_get, Swig_var_noGU_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"no_closingGU",Swig_var_no_closingGU_get, Swig_var_no_closingGU_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"tetra_loop",Swig_var_tetra_loop_get, Swig_var_tetra_loop_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"energy_set",Swig_var_energy_set_get, Swig_var_energy_set_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"circ",Swig_var_circ_get, Swig_var_circ_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"csv",Swig_var_csv_get, Swig_var_csv_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"oldAliEn",Swig_var_oldAliEn_get, Swig_var_oldAliEn_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"ribo",Swig_var_ribo_get, Swig_var_ribo_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"RibosumFile",Swig_var_RibosumFile_get, Swig_var_RibosumFile_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"nonstandards",Swig_var_nonstandards_get, Swig_var_nonstandards_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"temperature",Swig_var_temperature_get, Swig_var_temperature_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"james_rule",Swig_var_james_rule_get, Swig_var_james_rule_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"base_pair",Swig_var_base_pair_get, Swig_var_base_pair_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"pr",Swig_var_pr_get, Swig_var_pr_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"iindx",Swig_var_iindx_get, Swig_var_iindx_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"pf_scale",Swig_var_pf_scale_get, Swig_var_pf_scale_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"do_backtrack",Swig_var_do_backtrack_get, Swig_var_do_backtrack_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"backtrack_type",Swig_var_backtrack_type_get, Swig_var_backtrack_type_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"gquad",Swig_var_gquad_get, Swig_var_gquad_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"cv_fact",Swig_var_cv_fact_get, Swig_var_cv_fact_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"nc_fact",Swig_var_nc_fact_get, Swig_var_nc_fact_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"subopt_sorted",Swig_var_subopt_sorted_get, Swig_var_subopt_sorted_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"loop_size",Swig_var_loop_size_get, Swig_var_loop_size_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"helix_size",Swig_var_helix_size_get, Swig_var_helix_size_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"loop_degree",Swig_var_loop_degree_get, Swig_var_loop_degree_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"loops",Swig_var_loops_get, Swig_var_loops_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"unpaired",Swig_var_unpaired_get, Swig_var_unpaired_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"pairs",Swig_var_pairs_get, Swig_var_pairs_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"edit_backtrack",Swig_var_edit_backtrack_get, Swig_var_edit_backtrack_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"aligned_line",Swig_var_aligned_line_get, Swig_var_aligned_line_set);
+ SWIG_addvarlink(SWIG_globals(),(char*)"cost_matrix",Swig_var_cost_matrix_get, Swig_var_cost_matrix_set);
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_ERROR",SWIG_From_unsigned_SS_int((unsigned int)(1U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_QUIT",SWIG_From_unsigned_SS_int((unsigned int)(2U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_MISC",SWIG_From_unsigned_SS_int((unsigned int)(4U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_FASTA_HEADER",SWIG_From_unsigned_SS_int((unsigned int)(8U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_SEQUENCE",SWIG_From_unsigned_SS_int((unsigned int)(16U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_CONSTRAINT",SWIG_From_unsigned_SS_int((unsigned int)(32U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_NO_TRUNCATION",SWIG_From_unsigned_SS_int((unsigned int)(256U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_NO_REST",SWIG_From_unsigned_SS_int((unsigned int)(512U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_NO_SPAN",SWIG_From_unsigned_SS_int((unsigned int)(1024U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_NOSKIP_BLANK_LINES",SWIG_From_unsigned_SS_int((unsigned int)(2048U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_BLANK_LINE",SWIG_From_unsigned_SS_int((unsigned int)(4096U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_NOSKIP_COMMENTS",SWIG_From_unsigned_SS_int((unsigned int)(128U)));
+ SWIG_Python_SetConstant(d, "VRNA_INPUT_COMMENT",SWIG_From_unsigned_SS_int((unsigned int)(8192U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_PIPE",SWIG_From_unsigned_SS_int((unsigned int)(1U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_DOT",SWIG_From_unsigned_SS_int((unsigned int)(2U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_X",SWIG_From_unsigned_SS_int((unsigned int)(4U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_ANG_BRACK",SWIG_From_unsigned_SS_int((unsigned int)(8U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_RND_BRACK",SWIG_From_unsigned_SS_int((unsigned int)(16U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_MULTILINE",SWIG_From_unsigned_SS_int((unsigned int)(32U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_NO_HEADER",SWIG_From_unsigned_SS_int((unsigned int)(64U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_ALL",SWIG_From_unsigned_SS_int((unsigned int)(128U)));
+ SWIG_Python_SetConstant(d, "VRNA_CONSTRAINT_G",SWIG_From_unsigned_SS_int((unsigned int)(256U)));
+ SWIG_Python_SetConstant(d, "VRNA_OPTION_MULTILINE",SWIG_From_unsigned_SS_int((unsigned int)(32U)));
+ SWIG_Python_SetConstant(d, "FILENAME_MAX_LENGTH",SWIG_From_int((int)(80)));
+ SWIG_Python_SetConstant(d, "FILENAME_ID_LENGTH",SWIG_From_int((int)(42)));
+ SWIG_addvarlink(SWIG_globals(),(char*)"xsubi",Swig_var_xsubi_get, Swig_var_xsubi_set);
+
+ /* work around segfault when script tries to free symbolset */
+
+ symbolset = (char *) space(21);
+ strcpy(symbolset, "AUGC");
+
+
+ SWIG_Python_SetConstant(d, "PI",SWIG_From_double((double)(3.141592654)));
+ SWIG_Python_SetConstant(d, "PIHALF",SWIG_From_double((double)(3.141592654/2.)));
+ SWIG_Python_SetConstant(d, "VRNA_PLOT_TYPE_SIMPLE",SWIG_From_int((int)(0)));
+ SWIG_Python_SetConstant(d, "VRNA_PLOT_TYPE_NAVIEW",SWIG_From_int((int)(1)));
+ SWIG_Python_SetConstant(d, "VRNA_PLOT_TYPE_CIRCULAR",SWIG_From_int((int)(2)));
+ SWIG_addvarlink(SWIG_globals(),(char*)"rna_plot_type",Swig_var_rna_plot_type_get, Swig_var_rna_plot_type_set);
+#if PY_VERSION_HEX >= 0x03000000
+ return m;
+#else
+ return;
+#endif
+}
+
git://source.jalview.org / jabaws.git / blobdiff