WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / lib / Makefile.am

diff --git a/binaries/src/ViennaRNA/lib/Makefile.am b/binaries/src/ViennaRNA/lib/Makefile.am
new file mode 100644 (file)
index 0000000..9fb44d6
--- /dev/null
+++ b/binaries/src/ViennaRNA/lib/Makefile.am
@@ -0,0 +1,32 @@
+lib_LIBRARIES = libRNA.a
+
+
+if WITH_LIBSVM
+  SVM_SRC     = ../@LIBSVM_DIR@/svm.cpp
+  SVM_INC     = -I${srcdir}/../@LIBSVM_DIR@
+  SVM_H       = ../@LIBSVM_DIR@/svm.h
+  SVM_UTILS   = svm_utils.c
+endif
+
+libRNA_a_SOURCES  = dist_vars.c fold_vars.c part_func.c read_epars.c\
+                    treedist.c energy_par.c inverse.c ProfileDist.c \
+                    RNAstruct.c utils.c fold.c naview.c PS_dot.c \
+                    stringdist.c params.c subopt.c list.c Lfold.c \
+                    cofold.c part_func_co.c ProfileAln.c duplex.c \
+                    alifold.c alipfold.c aln_util.c LPfold.c \
+                    part_func_up.c ribo.c findpath.c convert_epars.c\
+                    MEA.c aliLfold.c mm.c 2Dfold.c 2Dpfold.c plex_functions.c\
+                    plot_layouts.c ali_plex.c c_plex.c plex.c snofold.c\
+                    snoop.c move_set.c gquad.c ${SVM_SRC} ${SVM_UTILS}
+
+libRNA_a_CFLAGS = $(AM_CFLAGS) $(OPENMP_CFLAGS) @FPIC@
+
+
+noinst_HEADERS  = intl11.h intl11dH.h intl21.h intl21dH.h \
+                  intl22.h intl22dH.h list.h\
+                  1.8.4_epars.h 1.8.4_intloops.h
+
+EXTRA_DIST = circfold.inc alicircfold.inc model_avg.inc model_sd.inc ${SVM_H}
+
+AM_CPPFLAGS = -I$(srcdir)/../H ${SVM_INC} @FPIC@
+