WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / libsvm-2.91 / svm.h

diff --git a/binaries/src/ViennaRNA/libsvm-2.91/svm.h b/binaries/src/ViennaRNA/libsvm-2.91/svm.h
new file mode 100644 (file)
index 0000000..6a25981
--- /dev/null
+++ b/binaries/src/ViennaRNA/libsvm-2.91/svm.h
@@ -0,0 +1,76 @@
+#ifndef _LIBSVM_H
+#define _LIBSVM_H
+
+#define LIBSVM_VERSION 291
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+extern int libsvm_version;
+
+struct svm_node
+{
+       int index;
+       double value;
+};
+
+struct svm_problem
+{
+       int l;
+       double *y;
+       struct svm_node **x;
+};
+
+enum { C_SVC, NU_SVC, ONE_CLASS, EPSILON_SVR, NU_SVR };        /* svm_type */
+enum { LINEAR, POLY, RBF, SIGMOID, PRECOMPUTED }; /* kernel_type */
+
+struct svm_parameter
+{
+       int svm_type;
+       int kernel_type;
+       int degree;     /* for poly */
+       double gamma;   /* for poly/rbf/sigmoid */
+       double coef0;   /* for poly/sigmoid */
+
+       /* these are for training only */
+       double cache_size; /* in MB */
+       double eps;     /* stopping criteria */
+       double C;       /* for C_SVC, EPSILON_SVR and NU_SVR */
+       int nr_weight;          /* for C_SVC */
+       int *weight_label;      /* for C_SVC */
+       double* weight;         /* for C_SVC */
+       double nu;      /* for NU_SVC, ONE_CLASS, and NU_SVR */
+       double p;       /* for EPSILON_SVR */
+       int shrinking;  /* use the shrinking heuristics */
+       int probability; /* do probability estimates */
+};
+
+struct svm_model *svm_train(const struct svm_problem *prob, const struct svm_parameter *param);
+void svm_cross_validation(const struct svm_problem *prob, const struct svm_parameter *param, int nr_fold, double *target);
+
+int svm_save_model(const char *model_file_name, const struct svm_model *model);
+struct svm_model *svm_load_model(const char *model_file_name);
+
+int svm_get_svm_type(const struct svm_model *model);
+int svm_get_nr_class(const struct svm_model *model);
+void svm_get_labels(const struct svm_model *model, int *label);
+double svm_get_svr_probability(const struct svm_model *model);
+
+double svm_predict_values(const struct svm_model *model, const struct svm_node *x, double* dec_values);
+double svm_predict(const struct svm_model *model, const struct svm_node *x);
+double svm_predict_probability(const struct svm_model *model, const struct svm_node *x, double* prob_estimates);
+
+void svm_destroy_model(struct svm_model *model);
+void svm_destroy_param(struct svm_parameter *param);
+
+const char *svm_check_parameter(const struct svm_problem *prob, const struct svm_parameter *param);
+int svm_check_probability_model(const struct svm_model *model);
+
+void svm_set_print_string_function(void (*print_func)(const char *));
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _LIBSVM_H */