WSTester updated to work plus hopefully all the other changes that need to go into...

[jabaws.git] / binaries / src / ViennaRNA / misc / ViennaRNA.spec.in

diff --git a/binaries/src/ViennaRNA/misc/ViennaRNA.spec.in b/binaries/src/ViennaRNA/misc/ViennaRNA.spec.in
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+# ViennaRNA.spec
+#
+# Copyright (c) 2001 Ivo Hofacker, Peter Stadler, ivo@tbi.univie.ac.at
+#
+Name:           @PACKAGE_NAME@
+Version:        @PACKAGE_VERSION@
+Release:        1%{?dist}
+Summary:        RNA Secondary Structure Prediction and Comparison
+
+Vendor:         Ivo Hofacker, TBI - University of Vienna
+Packager:       Ronny Lorenz <ronny@tbi.univie.ac.at>
+
+Group:          Applications/Engineering
+License:        Free for non commercial use.
+URL:            @PACKAGE_URL@
+Source0:        http://www.tbi.univie.ac.at/~ronny/programs/%{name}-%{version}.tar.gz
+BuildRoot:      %(mktemp -ud %{_tmppath}/%{name}-%{version}-%{release}-XXXXXX)
+
+BuildRequires:  perl gcc glibc-devel gd-devel info
+Requires:       perl libstdc++ glibc gd info
+Provides:       libRNA.a = %{version}-%{release}
+Provides:       Kinfold
+
+%define manifest %{_builddir}/%{name}-%{version}-%{release}.manifest
+
+%description
+The ViennaRNA package consists of a library and several standalone
+programs for RNA secondary structure analysis. It includes algorithms
+for predicting optimal and suboptimal secondary structures, base pair
+probabilities and partition functions, for comparing secondary
+structures, and the design of RNA sequences with a desired structure.
+
+%prep
+%setup -q
+
+%build
+%configure --with-cluster --without-forester --prefix=/usr/
+cd Perl
+perl Makefile.PL INSTALLDIRS=vendor
+cd ..
+make %{?_smp_mflags}
+
+%install
+rm -rf $RPM_BUILD_ROOT
+make install DESTDIR=$RPM_BUILD_ROOT
+
+# crude bugfix for info clash
+rm -f $RPM_BUILD_ROOT/usr/share/info/dir
+
+# build filelist the lazy way
+rm -f %{manifest}
+cd %{buildroot}
+# crude sed bugfix due to man/info compression
+find . -type f \
+        | sed -e 's/^\.//' -e 's/\(.*\/man\/man.*\)/\1.gz/' -e 's/\(.*\/share\/info.*\)/\1.gz/'>> %{manifest}
+find . -type l \
+        | sed -e 's/^\.//' >> %{manifest}
+
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+
+%files -f %{manifest}
+%defattr(-,root,root,-)
+
+%docdir doc
+/usr/share/doc/ViennaRNA
+
+%changelog
+* Mon Mar 26 2012 Ronny Lorenz <ronny@tbi.univie.ac.at>
+- Restored z-score computation capabilities for RNALfold
+* Thu Mar 08 2012 Ronny Lorenz <ronny@tbi.univie.ac.at>
+- Introduced new threadsafety for several folding recursions
+- Boltzmann factor scaling for RNAfold, RNAsubopt, RNAalifold, RNAplfold and RNAcofold
+- Plugged several memory leaks
+- Fixed fastaheader to filename bug
+* Tue Jan 18 2011 Ronny Lorenz <ronny@tbi.univie.ac.at>
+- created first rpm version of Vienna RNA Package 2.0
+- Energy model for all secondary structure folding algorithms has changed!
+- More programs that interface the RNAlib included
+* Tue Jan 26 2010 Richard Neuboeck <hawk@tbi.univie.ac.at>
+- install perl stuff to vendor dir instead of default
+* Tue Jan 26 2010 Richard Neuboeck <hawk@tbi.univie.ac.at>
+- Removed forester from install due to compile problems in F12