Wrapper for Clustal Omega.

[jabaws.git] / binaries / src / clustalo / src / Makefile.am

diff --git a/binaries/src/clustalo/src/Makefile.am b/binaries/src/clustalo/src/Makefile.am
new file mode 100644 (file)
index 0000000..9eb57b9
--- /dev/null
+++ b/binaries/src/clustalo/src/Makefile.am
@@ -0,0 +1,31 @@
+EXTRA_DIST = clustalo-api-test.c
+
+SUBDIRS = hhalign squid kmpp clustal
+
+AM_LDFLAGS = @AM_LDFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @OPENMP_CXXFLAGS@
+AM_CFLAGS = @AM_CFLAGS@ @OPENMP_CFLAGS@
+
+
+# the following is the clustalo convenience library which wraps all
+# the other noinst libraries
+
+lib_LTLIBRARIES = libclustalo.la
+
+libclustalo_la_SOURCES = clustal-omega.c
+libclustalo_la_LIBADD = clustal/libclustal.la \
+       hhalign/libhhalign.la \
+       squid/libsquid.la       \
+       kmpp/libkmpp.la 
+libclustalo_la_LDFLAGS = -static
+library_includedir=$(includedir)/clustalo/
+library_include_HEADERS = clustal-omega-config.h clustal-omega.h
+
+
+
+bin_PROGRAMS = clustalo
+
+clustalo_SOURCES =  main.cpp \
+       mymain.c mymain.h
+
+clustalo_LDADD = libclustalo.la