Wrapper for Clustal Omega.

[jabaws.git] / binaries / src / clustalo / src / hhalign / Makefile.am

diff --git a/binaries/src/clustalo/src/hhalign/Makefile.am b/binaries/src/clustalo/src/hhalign/Makefile.am
new file mode 100644 (file)
index 0000000..e54211b
--- /dev/null
+++ b/binaries/src/clustalo/src/hhalign/Makefile.am
@@ -0,0 +1,26 @@
+# Some useful automake documentation:
+# http://www.openismus.com/documents/linux/automake/automake.shtml
+# http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
+
+#SUBDIRS = 
+#EXTRA_DIST =
+# LDADD = foofiles/libfoo.a
+
+AM_CXXFLAGS = -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 @OPENMP_CXXFLAGS@ @AM_CXXFLAGS@ 
+
+noinst_LTLIBRARIES = libhhalign.la
+
+libhhalign_la_SOURCES =  hhalign.cpp hhalign.h \
+       hash-C.h hash.h hhdecl-C.h hhfunc-C.h hhfunc.h \
+       hhmatrices-C.h hhutil-C.h \
+       hhalignment-C.h hhalignment.h \
+       hhfullalignment-C.h hhfullalignment.h \
+       hhhalfalignment-C.h hhhalfalignment.h \
+       hhhit-C.h hhhit.h hhhitlist-C.h hhhitlist.h \
+       hhhmm-C.h hhhmm.h \
+       util-C.h list-C.h list.h \
+       general.h
+
+library_includedir=$(includedir)/clustalo/hhalign
+
+library_include_HEADERS = general.h hhfunc.h