Wrapper for Clustal Omega.

[jabaws.git] / binaries / src / clustalo / src / hhalign / hhfunc.h

diff --git a/binaries/src/clustalo/src/hhalign/hhfunc.h b/binaries/src/clustalo/src/hhalign/hhfunc.h
new file mode 100644 (file)
index 0000000..be2cd9a
--- /dev/null
+++ b/binaries/src/clustalo/src/hhalign/hhfunc.h
@@ -0,0 +1,25 @@
+/*********************************************************************
+ * Clustal Omega - Multiple sequence alignment
+ *
+ * Copyright (C) 2010 University College Dublin
+ *
+ * Clustal-Omega is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License as
+ * published by the Free Software Foundation; either version 2 of the
+ * License, or (at your option) any later version.
+ *
+ * This file is part of Clustal-Omega.
+ *
+ ********************************************************************/
+
+/*
+ *  RCS $Id: hhfunc.h 143 2010-10-14 13:11:14Z andreas $
+ */
+
+
+int readHMMWrapper(hmm_light *rHMM_p,
+                    char *pcHMM_input);
+void FreeHMMstruct(hmm_light *prHMM);
+int AlnToHMM2(hmm_light *rHMM_p,
+              char **ppcSeq, int iN);
+int HHMake_Wrapper(char *tmp_aln, char *hmm_out);