Wrapper for Clustal Omega.

[jabaws.git] / conf / Executable.properties

diff --git a/conf/Executable.properties b/conf/Executable.properties
index 4ce8e13..7471956 100644 (file)
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -48,7 +48,7 @@
 # iupred, jronn, globplot, disembl, aacon]\r
 \r
 \r
-####            Parameters specific to the JAVA Jar executables.        #### \r
+###  Parameters specific to the JAVA Jar executables.      ### \r
 \r
 ## Parameter supported by the executable Jar files, such as jronn and aacon, \r
 ## point to the location of the jar file. Also, local.<execname>.bin, \r
@@ -72,6 +72,17 @@ clustalw.parameters.file=conf/settings/ClustalParameters.xml
 #clustalw.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M\r
 \r
 \r
+######                 CLUSTAL OMEGA CONFIGURATION                ######\r
+local.clustalo.bin.windows=binaries/windows/clustalo/clustalo.exe\r
+local.clustalo.bin=binaries/src/clustalo/clustalo\r
+#cluster.clustalo.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/clustalo/clustalo\r
+## This parameters specifies the directory where the matrices files are stored   \r
+clustalo.presets.file=conf/settings/ClustalPresets.xml\r
+clustalo.parameters.file=conf/settings/ClustalParameters.xml\r
+#clustalo.limits.file=conf/settings/ClustalLimits.xml\r
+#clustalo.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M\r
+\r
+\r
 ######                 MUSCLE CONFIGURATION                 ######\r
 local.muscle.bin.windows=binaries/windows/muscle.exe\r
 local.muscle.bin=binaries/src/muscle/muscle\r