Wrapper for Clustal Omega.

[jabaws.git] / conf / settings / ClustaloLimits.xml

diff --git a/conf/settings/ClustaloLimits.xml b/conf/settings/ClustaloLimits.xml
new file mode 100644 (file)
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+++ b/conf/settings/ClustaloLimits.xml
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+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<limits>\r
+ <runnerClassName>compbio.runner.clustal.ClustalW</runnerClassName>\r
+       <limit isDefault="true">\r
+               <seqNumber>1000</seqNumber>\r
+               <seqLength>1000</seqLength>\r
+       </limit>\r
+       <limit isDefault="false">\r
+               <preset># LocalEngineExecutionLimit #</preset>\r
+               <seqNumber>30</seqNumber>\r
+               <seqLength>500</seqLength>\r
+       </limit>\r
+\r
+       <!-- Limits for presets -->\r
+       <limit isDefault="false">\r
+               <preset>Disable gap weighting (Speed-oriented)</preset>\r
+               <seqNumber>1000</seqNumber>\r
+               <seqLength>3000</seqLength>\r
+       </limit>\r
+\r
+</limits>\r