Wrapper for Clustal Omega.

[jabaws.git] / conf / settings / ClustaloPresets.xml

diff --git a/conf/settings/ClustaloPresets.xml b/conf/settings/ClustaloPresets.xml
new file mode 100644 (file)
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+++ b/conf/settings/ClustaloPresets.xml
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+<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
+<presets>\r
+ <runnerClassName>compbio.runner.clustal.ClustalW</runnerClassName>\r
+       <preset>\r
+               <name>Disable gap weighting (Speed-oriented)</name>\r
+               <description></description>\r
+               <optlist>\r
+                       <option>-NOPGAP</option>\r
+                       <option>-NOWEIGHTS</option>\r
+                       <option>-NOHGAP</option>\r
+               </optlist>\r
+       </preset>\r
+</presets>\r