</optlist>\r
</preset>\r
<preset>\r
- <name>Huge alignments (speed-oriented)</name>\r
- <description>Very large number of sequences (several thousand), or they are very long, </description>\r
+ <name>Large alignments (balanced)</name>\r
+ <description>A large number of sequences (a few thousand), or very long sequences, \r
+ then the default settings of may be too slow for practical use. \r
+ A good compromise between speed and accuracy is to run just the first two iterations of \r
+ the algorithm</description>\r
<optlist>\r
- <option>-maxiters 1</option>\r
- <option>-diags1</option>\r
- <option>-sv</option>\r
+ <option>-maxiters 2</option>\r
</optlist>\r
</preset>\r
</presets>\r