new version of muscle 3.8.31

[jabaws.git] / conf / settings / MusclePresets.xml

diff --git a/conf/settings/MusclePresets.xml b/conf/settings/MusclePresets.xml
index 190adad..6b63ac6 100644 (file)
--- a/conf/settings/MusclePresets.xml
+++ b/conf/settings/MusclePresets.xml
@@ -20,12 +20,13 @@
                </optlist>\r
        </preset>\r
        <preset>\r
-               <name>Huge alignments (speed-oriented)</name>\r
-               <description>Very large number of sequences (several thousand), or they are very long, </description>\r
+               <name>Large alignments (balanced)</name>\r
+               <description>A large number of sequences (a few thousand), or very long sequences, \r
+               then the default settings of may be too slow for practical use. \r
+               A good compromise between speed and accuracy is to run just the first two iterations of \r
+               the algorithm</description>\r
                <optlist>\r
-                       <option>-maxiters 1</option>\r
-                       <option>-diags1</option>\r
-                       <option>-sv</option>\r
+                       <option>-maxiters 2</option>\r
                </optlist>\r
        </preset>\r
 </presets>\r