new version of muscle 3.8.31

[jabaws.git] / runner / compbio / runner / msa / Muscle.java

diff --git a/runner/compbio/runner/msa/Muscle.java b/runner/compbio/runner/msa/Muscle.java
index f3ac1c7..1d3b827 100644 (file)
--- a/runner/compbio/runner/msa/Muscle.java
+++ b/runner/compbio/runner/msa/Muscle.java
@@ -60,7 +60,8 @@ public class Muscle extends SkeletalExecutable<Muscle> {
                 * completes. So –quiet and –verbose are not contradictory."-quiet",\r
                 * "-verbose"\r
                 */\r
-               addParameters(Arrays.asList("-clwstrict", "-quiet", "-verbose"));\r
+               addParameters(Arrays.asList("-clwstrict", "-quiet", "-verbose",\r
+                               "-nocore"));\r
                cbuilder.setParam("-log", EXEC_STAT_FILE);\r
        }\r
 \r