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[jalview.git] / src / jalview / ext / jmol /
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser... tree | commitdiff
2016-09-14 Jim ProcterJAL-2164 create RESNUM features with padding the same... tree | commitdiff
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 tree | commitdiff
2016-09-07 Jim ProcterJAL-1803 JAL-1919 set type when structure file is parsed tree | commitdiff
2016-08-31 tcofoegbuJAL-2148 further enhancment to CA HETATM processing tree | commitdiff
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of... tree | commitdiff
2016-08-01 tcofoegbuJAL-2164 bugfix to convert insCodes of '\000' to '... tree | commitdiff
2016-07-22 tcofoegbuJAL-2148 Bugfix in structureImportSettings string-to... tree | commitdiff
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings tree | commitdiff
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati... tree | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop tree | commitdiff
2016-07-20 Jim ProcterJAL-1926 JAL-2106 fix name for flag controlling additio... tree | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... tree | commitdiff
2016-07-13 tcofoegbuJAL-2135 minor house-keeping tree | commitdiff
2016-07-12 tcofoegbuJAL-2135 NPE bugfix when parsing a structure file with... tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-07-01 tcofoegbuJAL-2135 bugfix for error preventing processing of... tree | commitdiff
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser... tree | commitdiff
2016-06-23 gmungocJAL-2130 now simply viewer.dispose() to close down... tree | commitdiff
2016-06-20 gmungocJAL-2130 call viewer.dispose() on closing Jmol tree | commitdiff
2016-04-06 tcofoegbuJAL-2047 JAL-1919 fixed empty tooltip text when a cell... tree | commitdiff
2016-03-24 tcofoegbuJAL-1919 Added ability to generate temprature factor... tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... tree | commitdiff
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi... tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2015-12-03 gmungocJAL-1827 code and comment tidy up tree | commitdiff
2015-12-02 gmungocJAL-1827 refactored to handle missing residues better tree | commitdiff
2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous... tree | commitdiff
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not... tree | commitdiff
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... tree | commitdiff
2015-08-28 gmungocJAL-1836 temporary workaround for negative resNumIns... tree | commitdiff
2015-08-26 gmungocJAL-1759 corrected syntax for 'atom picked' callback... tree | commitdiff
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull... tree | commitdiff
2015-08-05 Jim ProcterJAL-1821 patch for completeness - first model number... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 JAL-1759 reinstate rotation speed configuratio... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 JAL-1759 updated Jmol has different model... tree | commitdiff
2015-08-03 Jim ProcterJAL-1821 avoid race condition when multiple structures... tree | commitdiff
2015-06-30 gmungocJAL=1759 fix Jmol state command bug; remove debug output tree | commitdiff
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics tree | commitdiff
2015-06-30 gmungocJAL-1759 JMol now Jmol ! tree | commitdiff
2015-06-29 gmungocJAL-1759 correct conversion of Jmol Chain.chainId ... tree | commitdiff
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11 tree | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... tree | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... tree | commitdiff
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... tree | commitdiff
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... tree | commitdiff
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... tree | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... tree | commitdiff
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code tree | commitdiff
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondar... tree | commitdiff
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-674 futzing with bugs tree | commitdiff
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure... tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when... tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-07-07 Jim ProcterMerge branch 'structures/JAL-1016' into develop tree | commitdiff
2013-07-07 Jim ProcterJAL-1345 - set nSeconds arg for chemapps.stolaf.edu... tree | commitdiff
2013-07-07 Jim ProcterJAL-1016 Instruct user to report situations where the... tree | commitdiff
2013-07-07 Jim ProcterJAL-583 refactor todo about separating code to construc... tree | commitdiff
2013-07-07 Jim Procterfix for JAL-1016 - wait around until we have a complete... tree | commitdiff
2013-07-07 Jim ProcterJAL-1016 - do our assertions immediatly tree | commitdiff
2013-05-21 Jim ProcterJAL-674 ensure annotation is properly annotated tree | commitdiff
2013-05-21 Jim ProcterJAL-1231 add chain ID tree | commitdiff
2013-05-21 Jim ProcterJAL-1231 allow Jmol file handler to read from a stream tree | commitdiff
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... tree | commitdiff
2013-02-13 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data... tree | commitdiff
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep... tree | commitdiff
2012-12-04 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data... tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-24 jprocterJAL-1193 patch prevents JalviewJmolBinding from handlin... tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-05 jprocterJAL-1162 catch security exception and just use bare... tree | commitdiff
2012-03-01 jprocterMerge branch 'Release_2_7_Branch' into develop tree | commitdiff
2012-02-12 Jim Procter(JAL-1016) noted position where race condition occurs tree | commitdiff
2012-02-12 Jim Procter(JAL-1022) ensure all Jmol model filenames are normalis... tree | commitdiff
2012-02-12 Jim ProcterJAL-1025 JAL-1022 use File based equivalence to map... tree | commitdiff
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