Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / gui / Desktop.java
2024-09-13 Ben SoaresJAL-4461 Adding in a number of properties that control...
2024-08-29 Jim ProcterMerge branch 'develop' into feature/JAL-4446_cancellabl...
2024-08-26 Jim ProcterJAL-4420 new drag'n'drop behaviour is now an 'Experimen...
2024-08-26 Jim ProcterJAL-4420 report exceptions raised during a drop rather...
2024-08-06 Jim ProcterJAL-4446 avoid NPE when progress bar message is null
2024-08-05 Jim ProcterJAL-4446 allow progress bar message to be changed whils...
2024-08-05 Jim ProcterJAL-1551 gradle spotlessApply and doc tweaks
2024-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem...
2024-06-06 Ben SoaresJAL-4358 Add the JALVIEW: CREATED DESKTOP line to java...
2024-06-05 Ben SoaresJAL-4420 Allow associated files to be dragged on separa...
2024-06-05 Ben SoaresJAL-4409 Small refactoring of ArgParserUtils to allow...
2024-06-05 Ben SoaresMerge branch 'develop' into bug/JAL-4421_customise_volu...
2024-06-04 Jim ProcterMerge branch 'improvement/JAL-4409_implement_extra_sche...
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4159_pasimap
2024-05-14 Ben SoaresJAL-4414 Add a FileNotFoundException when identifying...
2024-04-18 MorellThomasImplemented ProgressBar for PaSiMap
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more...
2023-11-15 James ProcterJAL-4090 blocker patch JAL-3772 tidy up groovy console...
2023-11-02 James ProcterJAL-4169 fix up urls to faq and documentation
2023-10-23 James ProcterJAL-4310 let the user know when model pages are not...
2023-10-21 James ProcterJAL-1332 JAL-4298 JAL-3772 rejig the quit handler so... jims/bug/JAL-4298_java_console_causing_hang_at_startup
2023-10-20 Ben SoaresJAL-4298 Remove a stray return in the processGroovyScri...
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from...
2023-10-13 Ben SoaresJAL-3783 Updated groovy jars. Requires javaparser...
2023-10-11 Ben SoaresJAL-629 correct a timeout. Correct passing html flag.
2023-10-11 Ben SoaresJAL-629 Add a timeout to modal dialogs for command...
2023-10-11 Ben SoaresJAL-4298 Added diagnostics and minor dimension changes...
2023-10-05 Ben SoaresJAL-4298 Fixed initial log level to see .jalview_proper...
2023-09-12 Ben SoaresJAL-4262 Allow HTML in the dialog box for link to CLI...
2023-09-12 Ben SoaresJAL-4285 Better checkFiles processing. Better dialog.
2023-09-12 Ben SoaresJAL-4285 JAL-4262 Added a scrollable dialog to display...
2023-09-08 Ben SoaresJAL-4262 Dialog for GUI and WARN for CLI of old style...
2023-08-24 Ben SoaresMerge branch 'bug/JAL-4214_system_freeze_when_opening_f...
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC...
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn...
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of...
2023-06-29 Ben SoaresJAL-4214 Linux only: Disable menus when internal modal... bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux
2023-06-26 Ben SoaresMerge branch 'develop' into improvement/JAL-4206_improv... improvement/JAL-4206_improve_JalviewFileChooser_for_flatlaf
2023-06-21 James ProcterMerge branch 'patch/JAL-4196_structure_viewer_synchroni... patch/JAL-4196_structure_viewer_synchronising
2023-06-15 Ben SoaresJAL-4206 Use All Known Alignment Files as default until...
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest...
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in...
2023-06-08 James ProcterJAL-4196 structure view cli tests wait using new jalvie...
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-07 James ProcterJAL-4195 add exception handling for all image output...
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin...
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them
2023-05-26 Ben SoaresJAL-4125 Fixed non-closing external viewers, also added...
2023-05-26 Ben SoaresMerge branch 'develop' into feature/JAL-3416_update_to_... feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to...
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers...
2023-05-19 James ProcterJAL-1551 spotlessApply
2023-05-05 Ben SoaresJAL-629 test fixes
2023-03-28 Ben SoaresJAL-629 Opening files in new windows. not working yet
2023-03-24 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-03-24 Ben SoaresJAL-629 Test tidyup
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to...
2023-03-20 James ProcterJAL-4150 test and quick patch copying code from AlignFr...
2023-03-17 Ben SoaresJAL-629 All applications System.exits going through...
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader...
2023-02-13 Ben SoaresMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
2023-02-13 Ben SoaresJAL-4125 Move confirmation of closing external viewer...
2023-02-09 Ben SoaresJAL-4125 Additions to JvOptionPane and QuitHandler...
2023-01-17 Ben SoaresJAL-3416 No longer needed
2023-01-16 Ben SoaresJAL-3416 More tweaking of FlatLaf. Problem with macOS...
2022-12-08 Ben SoaresJAL-629 fix opening files
2022-11-23 Ben SoaresJAL-629 Doing things with the command line arguments
2022-11-16 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
2022-11-16 Ben SoaresJAL-3416 make flatlaf default for linux improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf
2022-11-09 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
2022-11-09 Ben SoaresJAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Tidying of unspecified Callable decla...
2022-11-02 Ben SoaresJAL-1988 JAL-3772 Moving packages to somewhere more...
2022-11-01 Ben SoaresJAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
2022-09-23 Ben SoaresJAL-1988 JAL-3772 Quit confirmation dialog boxes with...
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a...
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called...
2022-04-06 Ben SoaresJAL-3991 Made info displayed only when needed (Java...
2022-04-06 Ben SoaresJAL-3991 Added information output about the slightly...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab...
2022-02-16 Jim ProcterJAL-3837 GPL license on splashscreen (finally !) and...
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still...
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2021-09-15 Jim ProcterJAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2021-09-14 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba...
2021-02-10 Ben SoaresJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas...
2021-02-10 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba...
2021-02-05 Jim ProcterJAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi...
2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference...
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