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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
io
/ AnnotationFile.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2021-09-16
gmungoc
JAL-3779 apply properties to all groups with given...
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commitdiff
2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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commitdiff
2019-04-17
gmungoc
JAL-3026 fix bug loading Jalview Project (in Java)
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2018-10-09
Jim Procter
JAL-3127 TODO - resolve reference to Viewport for group...
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commitdiff
2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
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commitdiff
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
2017-06-07
kiramt
JAL-2591 Hidden columns regions can be output to string...
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commitdiff
2017-06-07
kiramt
JAL-2591 simplifying hidden columns usage
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
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commitdiff
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
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commitdiff
2017-04-25
kiramt
JAL-2388 Working hidden regions hide/show in desktop
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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commitdiff
2017-01-06
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
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commitdiff
2017-01-06
gmungoc
JAL-2360 findColour() with no args removed from ColourS...
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
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commitdiff
2016-12-16
Jim Procter
JAL-2360 report line number when threshold cannot be...
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commitdiff
2016-12-16
gmungoc
JAL-2360 getColour() renamed to getColourScheme(),...
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
2016-06-22
gmungoc
JAL-1982 defensive checks for null annotations array
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-09-03
Jim Procter
JAL-1863 allow RNA secondary structure rows exported...
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commitdiff
2015-08-10
Jim Procter
Merge branch 'release/2_9_documentation' into develop
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commitdiff
2015-07-23
Jim Procter
JAL-1819 commented out debugging message to stderr
bug/JAL-1819_isNaN
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commitdiff
2015-07-23
Jim Procter
JAL-1819 use Float.isNaN() to check for NaNs!
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commitdiff
2015-06-30
Jim Procter
JAL-1682 JAL-1645 remove references to 2.8.3
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2015-03-06
Jim Procter
reassign features already created/documented for 2...
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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commitdiff
2015-01-23
Jim Procter
JAL-1628 tweak signature of core annotation printer...
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new entry point for reading annotation files...
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commitdiff
2015-01-18
Jim Procter
JAL-1628 formatting and javadoc
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-04-21
Jim Procter
fix for JAL-1478
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2013-06-21
Jim Procter
JAL-1325 JAL-1294 resolve SEQUENCE_REF and GROUP_REF...
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commitdiff
2013-06-21
Jim Procter
JAL-1294 JAL-1325 store graphline for individual annota...
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commitdiff
2013-05-24
Jim Procter
patch for JAL-1300 fixes JAL-1294: read and write COMBI...
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commitdiff
2013-05-24
Jim Procter
JAL-1299 fix: ensure a new graphGroup is created if...
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commitdiff
2013-05-24
Jim Procter
fix for JAL-1297: COMBINE output now follows specificat...
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commitdiff
2013-05-24
Jim Procter
JAL-1070 - [ not a real patch ] - include offending...
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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commitdiff
2011-10-21
jprocter
todo
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2011-07-25
janengelhardt
JAL-841; Structure trigger token in jalview.io.Alignmen...
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commitdiff
2011-01-05
jprocter
JAL-727
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commitdiff
2010-12-15
jprocter
more accurate determination of annotation modification
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commitdiff
2010-12-15
jprocter
refactored key calc for hash to separate function
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commitdiff
2010-11-14
jprocter
import annotation file from datasource
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commitdiff
2010-09-23
jprocter
apply jalview code style
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-06-06
jprocter
patch for JAL-542
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commitdiff
2010-06-03
jprocter
patch and error reports re JAL-554
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
2010-04-28
jprocter
group/annotation association
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commitdiff
2010-04-23
jprocter
skips any annotation that appears to be identical to...
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commitdiff
2010-04-23
jprocter
next attempt for Bug #36198 - appears to work reproducibly
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commitdiff
2010-04-16
jprocter
patch for bug #36198 - more to follow on Monday.
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commitdiff
2010-03-22
jprocter
See note in Mantis bug #55537 : inconsistency between...
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commitdiff
2010-03-12
jprocter
1.1 compatibility
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commitdiff
2010-03-11
jprocter
new ROWPROPERTIES statement for setting an individual...
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commitdiff
2010-01-28
jprocter
quick fix for very broken checkin - see Mantis bug...
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commitdiff
2010-01-28
jprocter
more rigorous annotation row content check to limit...
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commitdiff
2009-09-22
jprocter
allow the display character below a graph to be explici...
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commitdiff
2009-07-24
jprocter
todo
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2009-02-06
jprocter
showUnconserved IO
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commitdiff
2008-11-04
jprocter
beginning of implementation of new properties for hide...
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commitdiff
2008-09-24
jprocter
fixed sequence associated annotation reading bug where...
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
2008-08-20
jprocter
Use 0f rather than NaN to specify non-valued annotation...
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