Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / io / AnnotationFile.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2021-09-16 gmungocJAL-3779 apply properties to all groups with given...
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in...
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-04-17 gmungocJAL-3026 fix bug loading Jalview Project (in Java)
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group...
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File...
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after...
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string...
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-16 Jim ProcterJAL-2360 report line number when threshold cannot be...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-07-11 gmungocfile format enum wip changes
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-03 Jim ProcterJAL-1863 allow RNA secondary structure rows exported...
2015-08-10 Jim ProcterMerge branch 'release/2_9_documentation' into develop
2015-07-23 Jim ProcterJAL-1819 commented out debugging message to stderr bug/JAL-1819_isNaN
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs!
2015-06-30 Jim ProcterJAL-1682 JAL-1645 remove references to 2.8.3
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim Procterreassign features already created/documented for 2...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer...
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-21 Jim Procterfix for JAL-1478
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-06-21 Jim ProcterJAL-1325 JAL-1294 resolve SEQUENCE_REF and GROUP_REF...
2013-06-21 Jim ProcterJAL-1294 JAL-1325 store graphline for individual annota...
2013-05-24 Jim Procterpatch for JAL-1300 fixes JAL-1294: read and write COMBI...
2013-05-24 Jim ProcterJAL-1299 fix: ensure a new graphGroup is created if...
2013-05-24 Jim Procterfix for JAL-1297: COMBINE output now follows specificat...
2013-05-24 Jim ProcterJAL-1070 - [ not a real patch ] - include offending...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-21 jproctertodo
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen...
2011-01-05 jprocterJAL-727
2010-12-15 jproctermore accurate determination of annotation modification
2010-12-15 jprocterrefactored key calc for hash to separate function
2010-11-14 jprocterimport annotation file from datasource
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-06-06 jprocterpatch for JAL-542
2010-06-03 jprocterpatch and error reports re JAL-554
2010-04-30 jprocterjalview 2.5 release banner
2010-04-28 jproctergroup/annotation association
2010-04-23 jprocterskips any annotation that appears to be identical to...
2010-04-23 jprocternext attempt for Bug #36198 - appears to work reproducibly
2010-04-16 jprocterpatch for bug #36198 - more to follow on Monday.
2010-03-22 jprocterSee note in Mantis bug #55537 : inconsistency between...
2010-03-12 jprocter1.1 compatibility
2010-03-11 jprocternew ROWPROPERTIES statement for setting an individual...
2010-01-28 jprocterquick fix for very broken checkin - see Mantis bug...
2010-01-28 jproctermore rigorous annotation row content check to limit...
2009-09-22 jprocterallow the display character below a graph to be explici...
2009-07-24 jproctertodo
2009-06-08 jprocterapply gpl development license
2009-02-06 jproctershowUnconserved IO
2008-11-04 jprocterbeginning of implementation of new properties for hide...
2008-09-24 jprocterfixed sequence associated annotation reading bug where...
2008-09-04 jproctermerge from 2_4_Release branch
2008-08-20 jprocterUse 0f rather than NaN to specify non-valued annotation...
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