Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / schemes / ResidueColourScheme.java
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-18 Jim ProcterMerge branch 'feature/2588' into merge/develop_feature...
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-28 kiramtJAL-2588 Gap colour scheme now shown in overview
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-09 gmungocJAL-2592 distinguish "User Defined" (scheme name) from... bug/JAL-2592userDefinedScheme
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin...
2017-02-01 gmungocJAL-2371 (slight!) simplification of isApplicableTo()
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter...
2017-01-06 gmungocJAL-2371 slight simplification of findColour overrides
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight...
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-13 gmungocJAL-2360 code formatting only and if-else changed to...
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
2016-11-02 gmungocJAL-98 ProfileI interface for Profile
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-25 gmungocJAL-98 field comments updated
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on...
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-14 Anne Menardlast version stay many bugs ..
2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-09-10 jprocterfix null pointer exception when using blosum colourscheme
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2007-02-27 amwaterhousecheck conservation length
2007-02-07 amwaterhouseFormatting
2007-01-30 amwaterhouseconsensusColouring never used
2006-12-05 amwaterhouseSequence is char []
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence...
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence...
2006-11-09 amwaterhouseCheck conensus is not null
2006-10-10 amwaterhouseaaIndex replaces aaHash
2006-10-06 amwaterhouseSet consensus as hashtble[]
2006-08-21 amwaterhouseheader updated
2006-02-09 amwaterhouseIf conservation is zero, colour is white
2006-02-03 amwaterhouseConservation colouring does what it should always have...
2005-09-08 amwaterhouseIf vconsensus is null, return
2005-08-22 amwaterhouseConservation colour scheme is no more
2005-08-18 amwaterhouseUse aa index for aboveThreshold as well as colour index
2005-08-15 amwaterhouseRemove null check
2005-08-15 amwaterhousePercentage precalculated in aafrequency
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-25 amwaterhouseall can threshold
2005-04-29 amwaterhousejust tidying up unused imports
2005-04-15 amwaterhouseconsensus held in residueColour
2004-12-15 amwaterhouseisGap method implemented in utils, and optimized
2004-12-14 amwaterhouseGetcolours is not needed ????
2004-12-03 amwaterhouseSpace char added
2004-11-16 amwaterhouseremove jbgui import
2004-11-02 amwaterhouseJalview Imported Sources start