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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
util
/ DBRefUtils.java
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-01-25
James Procter
JAL-4116 relegate the failed to promote warning to...
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commitdiff
2023-01-25
James Procter
JAL-4116 relegate the failed to promote warning to...
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commitdiff
2023-01-20
Jim Procter
JAL-2353 primary ref candidates that should be promoted...
patch/Release_2_11_2_6_Branch
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
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commitdiff
2020-02-14
Jim Procter
fix for JAL-3529
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-02-04
hansonr
refactoring for DBMODList
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commitdiff
2019-01-26
hansonr
removing cyclic call
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
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commitdiff
2018-09-18
Jim Procter
JAL-3035 more dedasification
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
2016-11-02
kiramt
JAL-2281 Use DBRefs.selectRefs to uppercase URL link...
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
2016-10-05
gmungoc
Merge branch 'develop' into task/JAL-2196pdbeProperties
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commitdiff
2016-10-03
gmungoc
JAL-2110 javadoc formatting only
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commitdiff
2016-09-28
Jim Procter
JAL-2210 patch for when no DBRefs on sequence
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commitdiff
2016-09-27
Jim Procter
JAL-2210 formatting
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commitdiff
2016-09-27
Jim Procter
JAL-2210 promote direct dbrefs from verified sources...
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commitdiff
2016-09-13
gmungoc
JAL-2196 refactor PDBEntry.getProperty,setProperty...
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commitdiff
2016-08-30
Jim Procter
JAL-2154 always compare canonicalised DBRefEntry source...
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commitdiff
2016-08-30
Jim Procter
JAL-2154 simplify expression
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commitdiff
2016-08-29
Jim Procter
JAL-2154 canonical dbsources are lowercased before...
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commitdiff
2016-08-29
Jim Procter
JAL-2154 ENA specific Ensembl canonical db prefixes
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commitdiff
2016-07-01
gmungoc
JAL-2110 bug fixing and tidying for get cross-refs
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2016-06-03
gmungoc
JAL-2110 random stuff
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2016-05-20
gmungoc
JAL-2110 unit tests for and minor refactoring of CrossRef
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commitdiff
2016-02-19
gmungoc
JAL-1705 lenient DBRef matcher added (accession id...
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commitdiff
2016-01-29
gmungoc
JAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei...
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commitdiff
2016-01-21
gmungoc
JAL-1705 canonicalise ENSEMBL name; code tidy
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commitdiff
2016-01-08
gmungoc
JAL-1705 DbSourceProxy properties converted to methods...
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-1705_ensembl
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
2015-06-28
Jim Procter
JAL-1705 refactored code for dbsource reggae validator...
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
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commitdiff
2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
2014-10-06
Jim Procter
JAL-1500 JAL-1265 patch to parse PDB database refs...
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2012-11-17
jprocter
store chaincode on pdbentry
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
2010-09-23
jprocter
apply jalview code style
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
2009-06-19
jprocter
debug comments
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commitdiff
2009-06-08
jprocter
apply gpl development license
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2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
2008-08-01
jprocter
todo
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commitdiff
2007-10-24
jprocter
add parsed PDB reference to sequences
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commitdiff
2007-09-29
jprocter
javadoc
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2007-09-07
jprocter
added a more general DBRef search interface
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2007-07-25
jprocter
uniprot synonym
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commitdiff
2007-07-13
jprocter
new search method for finding references like other...
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2007-06-18
jprocter
1.1 methods
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2007-04-30
jprocter
javadoc
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2007-03-19
jprocter
New method for mapping from common database sources...
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commitdiff
2007-02-07
amwaterhouse
Formatting
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-07-21
amwaterhouse
DBRefs now array
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commitdiff
2006-06-08
jprocter
Introduced DbRefEntry to DasSourceCoordinateSystem...
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commitdiff
2006-03-14
jprocter
methods for searching DBRef lists
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