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JAL-3070 javadoc for (mostly) jabaws specific methods
[jalview.git] / src /
2019-06-18 gmungocJAL-3304 option to export linked features also for... tree | commitdiff
2019-06-18 Ben SoaresJAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations... tree | commitdiff
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview... tree | commitdiff
2019-06-18 gmungocJAL-3187 i18n show linked features checkboxes tree | commitdiff
2019-06-18 gmungocJAL-3305 mirror popup menu column selections in split... tree | commitdiff
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged tree | commitdiff
2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature... tree | commitdiff
2019-06-17 gmungocJAL-3187 update alignAs code and unit tests for 'shared... tree | commitdiff
2019-06-17 gmungocJAL-3187 add sequence to feature details table (and... tree | commitdiff
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-06-14 Ben SoaresJAL-3295 pre-merged code with JAL-3295 branch which... tree | commitdiff
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log... tree | commitdiff
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... tree | commitdiff
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean tree | commitdiff
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera tree | commitdiff
2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants tree | commitdiff
2019-06-13 Jim ProcterMerge branch 'bug/JAL-3295_CMD_select_not_working_in_se... tree | commitdiff
2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript tree | commitdiff
2019-06-12 Ben SoaresJAL-3295 Fixed CMD-select of sequences in alignment... tree | commitdiff
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present tree | commitdiff
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus tree | commitdiff
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript tree | commitdiff
2019-06-10 tvaJAL-3297 pad gaps in alignment to ensure hmmalign runs tree | commitdiff
2019-06-07 gmungocJAL-3187 save and restore flags for show complement... tree | commitdiff
2019-06-07 gmungocJAL-3187 change fields to local variables tree | commitdiff
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... tree | commitdiff
2019-06-07 tvaJAL-3291 issue fixed, passing tests added tree | commitdiff
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF... tree | commitdiff
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype... tree | commitdiff
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... tree | commitdiff
2019-06-06 tvaJAL-3285 build Jalview XML file for current version tree | commitdiff
2019-06-06 tvaJAL-3285 fix incorrect file paths on HMMAlign/Search... tree | commitdiff
2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... tree | commitdiff
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from... tree | commitdiff
2019-06-06 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-06-06 tvaJAL-3285 add Cygwin environment path fix for Windows tree | commitdiff
2019-06-06 tvaJAL-3285 code changes to HMMER colour schemes not inclu... tree | commitdiff
2019-06-06 tvaJAL-3285 fix FileLoader failing to load HMMER file tree | commitdiff
2019-06-05 tvaJAL-3285 method call change tin Information to match... tree | commitdiff
2019-06-05 tvaJAL-3285 delete duplicate variables in AlignmentViewpor... tree | commitdiff
2019-06-05 tvaJAL-3285 method call change to HMMBuild not included... tree | commitdiff
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11 tree | commitdiff
2019-06-05 tvaJAL-3285 method call change in SeqPanel to match develop tree | commitdiff
2019-06-05 tvaJAL-3285 change method declaration in AAFrequency to... tree | commitdiff
2019-06-05 tvaJAL-3285 changed method call on AnnotationRenderer... tree | commitdiff
2019-06-05 tvaJAL-3285 code changes to Jalview2XML not included in... tree | commitdiff
2019-06-05 tvaJAL-3285 add unmerged code to AlignmentAnnotation tree | commitdiff
2019-06-05 tvaJAL-3285 method call name change to SeqPanel not includ... tree | commitdiff
2019-06-05 tvaJAL-3285 method call name change in OverviewPanel not... tree | commitdiff
2019-06-05 tvaJAL-3285 small method call name change to AnnotationLabels tree | commitdiff
2019-06-05 tvaJAL-3285 add unmerged code to SequenceGroup tree | commitdiff
2019-06-05 tvaJAL-3285 small method call name change missed in Consen... tree | commitdiff
2019-06-05 tvaJAL-3285 small code changes to ConsensusThread not... tree | commitdiff
2019-06-05 tvaJAL-3285 small code changes to AnnotationRenderer not... tree | commitdiff
2019-06-05 tvaJAL-3285 code changes to AnnotationLabels not included... tree | commitdiff
2019-06-05 tvaJAL-3285 add unmerged features to AlignViewportI tree | commitdiff
2019-06-05 tvaJAL-3285 add unmerged features to AlignViewport tree | commitdiff
2019-06-05 tvaJAL-3285 add unmerged features into AlignmentViewport tree | commitdiff
2019-06-05 tvaJAL-3285 add methods and small changes to StockholmFile... tree | commitdiff
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer tree | commitdiff
2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query bug/JAL-3286duplicatePdbQuery tree | commitdiff
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just... tree | commitdiff
2019-05-29 gmungocJAL-2738 error logging if no ##reference found tree | commitdiff
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens... tree | commitdiff
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove... tree | commitdiff
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility tree | commitdiff
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into... tree | commitdiff
2019-05-27 Ben SoaresJAL-3141 Object array cast missing tree | commitdiff
2019-05-27 Ben SoaresMerge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_... tree | commitdiff
2019-05-27 Ben SoaresJAL-3141 Generified the JvUtils.buildComboWithTooltips... tree | commitdiff
2019-05-25 Ben SoaresJAL-3141 One more error log fix tree | commitdiff
2019-05-25 Ben SoaresJAL-3141 Added tooltips on Schemes dropdown and Customi... tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Fixes recommended from gmc's test tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Fixed vertical size of the example filenames... tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the... tree | commitdiff
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis... tree | commitdiff
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... tree | commitdiff
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS... tree | commitdiff
2019-05-06 gmungocJAL-3239 release note tree | commitdiff
2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monosp... tree | commitdiff
2019-05-06 gmungocJAL-3244 delete obsolete method tree | commitdiff
2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even... bug/JAL-3239monospacedEps tree | commitdiff
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows tree | commitdiff
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing... tree | commitdiff
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil... tree | commitdiff
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF... tree | commitdiff
2019-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2019-04-26 gmungocJAL-2743 class Javadoc tree | commitdiff
2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to speci... tree | commitdiff
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition... tree | commitdiff
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition" tree | commitdiff
2019-04-26 gmungocJAL-2808 better tooltip 'delete this condition' tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... tree | commitdiff
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... tree | commitdiff
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change... tree | commitdiff
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection... tree | commitdiff
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