WEB-INF/web.xml

   1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"\r
   2     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"\r
   3     xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"\r
   4     version="2.4">\r
   5 \r
   6     <display-name>JABAWS</display-name>\r
   7     <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>\r
   8 \r
   9         <listener>\r
  10                 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>\r
  11         </listener>\r
  12     <listener>\r
  13         <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>\r
  14      </listener>\r
  15      <listener>\r
  16         <listener-class>compbio.ws.server.SetExecutableFlag</listener-class>\r
  17      </listener>\r
  18      <listener>\r
  19         <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>\r
  20      </listener>\r
  21     \r
  22         <!-- Session timeout in minutes -->\r
  23         <session-config>\r
  24                 <session-timeout>20</session-timeout>\r
  25     </session-config>\r
  26  \r
  27      <servlet>\r
  28         <display-name>This is a standard tomcat 'default' servlet for making listings</display-name>\r
  29         <servlet-name>listings</servlet-name>\r
  30         <servlet-class>org.apache.catalina.servlets.DefaultServlet</servlet-class>\r
  31         <init-param>\r
  32             <param-name>debug</param-name>\r
  33             <param-value>0</param-value>\r
  34         </init-param>\r
  35         <init-param>\r
  36             <param-name>readonly</param-name>\r
  37             <param-value>true</param-value>\r
  38         </init-param>\r
  39         <init-param>\r
  40             <param-name>listings</param-name>\r
  41             <param-value>true</param-value>\r
  42         </init-param>\r
  43         <load-on-startup>1</load-on-startup>\r
  44     </servlet>\r
  45 \r
  46     <servlet>\r
  47         <description>Display pre-calculated accounting info</description>\r
  48         <servlet-name>DisplayStat</servlet-name>\r
  49         <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>\r
  50     </servlet>\r
  51   \r
  52     <servlet>\r
  53         <description>Display job list</description>\r
  54         <servlet-name>Joblist</servlet-name>\r
  55         <servlet-class>compbio.stat.servlet.Joblist</servlet-class>\r
  56     </servlet>\r
  57     \r
  58     <servlet>\r
  59         <description>Display monthly summary statistics</description>\r
  60         <servlet-name>AnnualStat</servlet-name>\r
  61         <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
  62     </servlet>\r
  63     \r
  64      <servlet>\r
  65         <description>Display monthly summary statistics with no links to details</description>\r
  66         <servlet-name>PublicAnnualStat</servlet-name>\r
  67         <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
  68     </servlet>\r
  69     \r
  70     <servlet>\r
  71         <servlet-name>RegistryWS</servlet-name>\r
  72         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  73         <load-on-startup>1</load-on-startup>\r
  74     </servlet>\r
  75     \r
  76     <servlet>\r
  77         <servlet-name>ClustalWS</servlet-name>\r
  78         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  79         <load-on-startup>1</load-on-startup>\r
  80     </servlet>\r
  81     \r
  82     <servlet>\r
  83         <servlet-name>ClustalOWS</servlet-name>\r
  84         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  85         <load-on-startup>1</load-on-startup>\r
  86     </servlet>\r
  87     \r
  88     <servlet>\r
  89         <servlet-name>MuscleWS</servlet-name>\r
  90         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  91         <load-on-startup>1</load-on-startup>\r
  92     </servlet>\r
  93     \r
  94     <servlet>\r
  95         <servlet-name>MafftWS</servlet-name>\r
  96         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  97         <load-on-startup>1</load-on-startup>\r
  98     </servlet>\r
  99     \r
 100     <servlet>\r
 101         <servlet-name>TcoffeeWS</servlet-name>\r
 102         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 103         <load-on-startup>1</load-on-startup>\r
 104     </servlet>\r
 105      \r
 106     <servlet>\r
 107         <servlet-name>ProbconsWS</servlet-name>\r
 108         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 109         <load-on-startup>1</load-on-startup>\r
 110     </servlet>\r
 111     \r
 112      <servlet>\r
 113         <servlet-name>AAConWS</servlet-name>\r
 114         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 115         <load-on-startup>1</load-on-startup>\r
 116     </servlet>\r
 117    \r
 118      <servlet>\r
 119         <servlet-name>JronnWS</servlet-name>\r
 120         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 121         <load-on-startup>1</load-on-startup>\r
 122     </servlet>\r
 123 \r
 124      <servlet>\r
 125         <servlet-name>DisemblWS</servlet-name>\r
 126         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 127                 <load-on-startup>1</load-on-startup>\r
 128     </servlet>\r
 129     \r
 130     <servlet>\r
 131         <servlet-name>GlobPlotWS</servlet-name>\r
 132         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 133         <load-on-startup>1</load-on-startup>\r
 134     </servlet>\r
 135     \r
 136      <servlet>\r
 137         <servlet-name>IUPredWS</servlet-name>\r
 138         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 139         <load-on-startup>1</load-on-startup>\r
 140     </servlet>\r
 141    \r
 142     <servlet-mapping>\r
 143         <servlet-name>listings</servlet-name>\r
 144         <url-pattern>/</url-pattern>\r
 145         </servlet-mapping>\r
 146              \r
 147     <servlet-mapping>\r
 148         <servlet-name>DisplayStat</servlet-name>\r
 149         <url-pattern>/DisplayStat</url-pattern>\r
 150         </servlet-mapping>\r
 151         \r
 152          <servlet-mapping>\r
 153         <servlet-name>AnnualStat</servlet-name>\r
 154         <url-pattern>/AnnualStat</url-pattern>\r
 155         </servlet-mapping>  \r
 156     \r
 157      <servlet-mapping>\r
 158         <servlet-name>PublicAnnualStat</servlet-name>\r
 159         <url-pattern>/PublicAnnualStat</url-pattern>\r
 160         </servlet-mapping>  \r
 161     \r
 162     \r
 163     <servlet-mapping>\r
 164         <servlet-name>Joblist</servlet-name>\r
 165         <url-pattern>/Joblist</url-pattern>\r
 166         </servlet-mapping> \r
 167         \r
 168     <servlet-mapping>\r
 169         <servlet-name>RegistryWS</servlet-name>\r
 170         <url-pattern>/RegistryWS</url-pattern>\r
 171     </servlet-mapping>\r
 172     \r
 173     <servlet-mapping>\r
 174         <servlet-name>ClustalWS</servlet-name>\r
 175         <url-pattern>/ClustalWS</url-pattern>\r
 176     </servlet-mapping>\r
 177     \r
 178      <servlet-mapping>\r
 179         <servlet-name>ClustalOWS</servlet-name>\r
 180         <url-pattern>/ClustalOWS</url-pattern>\r
 181     </servlet-mapping>\r
 182     \r
 183     <servlet-mapping>\r
 184         <servlet-name>MuscleWS</servlet-name>\r
 185         <url-pattern>/MuscleWS</url-pattern>\r
 186     </servlet-mapping>\r
 187 \r
 188    <servlet-mapping>\r
 189         <servlet-name>MafftWS</servlet-name>\r
 190         <url-pattern>/MafftWS</url-pattern>\r
 191     </servlet-mapping>\r
 192     \r
 193    <servlet-mapping>\r
 194         <servlet-name>TcoffeeWS</servlet-name>\r
 195         <url-pattern>/TcoffeeWS</url-pattern>\r
 196    </servlet-mapping>\r
 197 \r
 198    <servlet-mapping>\r
 199         <servlet-name>ProbconsWS</servlet-name>\r
 200         <url-pattern>/ProbconsWS</url-pattern>\r
 201    </servlet-mapping>\r
 202  \r
 203    <servlet-mapping>\r
 204         <servlet-name>AAConWS</servlet-name>\r
 205         <url-pattern>/AAConWS</url-pattern>\r
 206    </servlet-mapping>\r
 207    \r
 208     <servlet-mapping>\r
 209         <servlet-name>JronnWS</servlet-name>\r
 210         <url-pattern>/JronnWS</url-pattern>\r
 211    </servlet-mapping>\r
 212    \r
 213    <servlet-mapping>\r
 214         <servlet-name>DisemblWS</servlet-name>\r
 215         <url-pattern>/DisemblWS</url-pattern>\r
 216    </servlet-mapping>\r
 217    \r
 218    <servlet-mapping>\r
 219         <servlet-name>GlobPlotWS</servlet-name>\r
 220         <url-pattern>/GlobPlotWS</url-pattern>\r
 221    </servlet-mapping>\r
 222    \r
 223     <servlet-mapping>\r
 224         <servlet-name>IUPredWS</servlet-name>\r
 225         <url-pattern>/IUPredWS</url-pattern>\r
 226    </servlet-mapping>\r
 227    \r
 228    <security-constraint>\r
 229     <web-resource-collection>\r
 230         <web-resource-name>Administrator pages</web-resource-name>\r
 231                 <!-- Prohibit access to any resources -->\r
 232         <url-pattern>/</url-pattern>\r
 233         <url-pattern>/DisplayStat</url-pattern>\r
 234         <url-pattern>/Joblist</url-pattern>\r
 235         <url-pattern>/AnnualStat</url-pattern>\r
 236         <url-pattern>/conf/*</url-pattern>\r
 237                 <url-pattern>/binaries/*</url-pattern>\r
 238                 <url-pattern>/jobsout/*</url-pattern>\r
 239                 <url-pattern>/testsrc/*</url-pattern>\r
 240                 <url-pattern>/lib/*</url-pattern>\r
 241                 <url-pattern>/test-output/*</url-pattern>\r
 242         <!-- No http-method means all methods are constrained -->\r
 243     </web-resource-collection>\r
 244     <auth-constraint>\r
 245       <role-name>admin</role-name>\r
 246     </auth-constraint>\r
 247    </security-constraint>\r
 248 \r
 249   <!-- unsupported HTTP methods -->\r
 250   <security-constraint>\r
 251         <web-resource-collection>\r
 252         <web-resource-name>unsupported HTTP methods</web-resource-name>\r
 253         <url-pattern>/*</url-pattern>\r
 254             <http-method>PUT</http-method>\r
 255             <http-method>DELETE</http-method>\r
 256             <http-method>TRACE</http-method>\r
 257             <http-method>HEAD</http-method>\r
 258             <http-method>OPTIONS</http-method>\r
 259         </web-resource-collection>\r
 260         <auth-constraint/>\r
 261   </security-constraint>\r
 262       <!-- Define the Login Configuration for this Application -->\r
 263   <login-config>\r
 264          <auth-method>BASIC</auth-method>\r
 265          <realm-name>JABAWS administrators</realm-name>\r
 266   </login-config>\r
 267   \r
 268     <!-- Security roles referenced by this web application -->\r
 269   <security-role>\r
 270     <description>\r
 271       The role that is required to log in and view JABAWS internals\r
 272     </description>\r
 273     <role-name>admin</role-name>\r
 274   </security-role>\r
 275   \r
 276 </web-app>