WEB-INF/web.xml

   1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"\r
   2     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"\r
   3     xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"\r
   4     version="2.4">\r
   5 \r
   6     <display-name>JABAWS</display-name>\r
   7     <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>\r
   8 \r
   9         <listener>\r
  10                 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>\r
  11         </listener>\r
  12     <listener>\r
  13         <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>\r
  14      </listener>\r
  15      <listener>\r
  16         <listener-class>compbio.ws.server.SetExecutableFlag</listener-class>\r
  17      </listener>\r
  18      <listener>\r
  19         <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>\r
  20      </listener>\r
  21     \r
  22         <!-- Session timeout in minutes -->\r
  23         <session-config>\r
  24                 <session-timeout>20</session-timeout>\r
  25     </session-config>\r
  26  \r
  27      <servlet>\r
  28         <display-name>This is a standard tomcat 'default' servlet for making listings</display-name>\r
  29         <servlet-name>listings</servlet-name>\r
  30         <servlet-class>org.apache.catalina.servlets.DefaultServlet</servlet-class>\r
  31         <init-param>\r
  32             <param-name>debug</param-name>\r
  33             <param-value>0</param-value>\r
  34         </init-param>\r
  35         <init-param>\r
  36             <param-name>readonly</param-name>\r
  37             <param-value>true</param-value>\r
  38         </init-param>\r
  39         <init-param>\r
  40             <param-name>listings</param-name>\r
  41             <param-value>true</param-value>\r
  42         </init-param>\r
  43         <load-on-startup>1</load-on-startup>\r
  44     </servlet>\r
  45 \r
  46     <servlet>\r
  47         <description>Display pre-calculated accounting info</description>\r
  48         <servlet-name>DisplayStat</servlet-name>\r
  49         <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>\r
  50     </servlet>\r
  51   \r
  52    <servlet>\r
  53         <description>WebServices Status</description>\r
  54         <servlet-name>ServiceStatus</servlet-name>\r
  55         <servlet-class>compbio.stat.servlet.ServiceStatus</servlet-class>\r
  56     </servlet>\r
  57 \r
  58    <servlet>\r
  59         <servlet-name>DownloadRedirector</servlet-name>\r
  60         <servlet-class>compbio.stat.servlet.DownloadRedirector</servlet-class>\r
  61     </servlet>\r
  62    \r
  63     <servlet>\r
  64         <description>WebService Status with no UI. Accepts web service name as a parameter</description>\r
  65         <servlet-name>HttpCodeResponseServiceStatus</servlet-name>\r
  66         <servlet-class>compbio.stat.servlet.HttpCodeResponseServiceStatus</servlet-class>\r
  67     </servlet>\r
  68     \r
  69     <servlet>\r
  70         <description>Display job list</description>\r
  71         <servlet-name>Joblist</servlet-name>\r
  72         <servlet-class>compbio.stat.servlet.Joblist</servlet-class>\r
  73     </servlet>\r
  74     \r
  75     <servlet>\r
  76         <description>Display monthly summary statistics</description>\r
  77         <servlet-name>AnnualStat</servlet-name>\r
  78         <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
  79     </servlet>\r
  80     \r
  81      <servlet>\r
  82         <description>Display monthly summary statistics with no links to details</description>\r
  83         <servlet-name>PublicAnnualStat</servlet-name>\r
  84         <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
  85     </servlet>\r
  86     \r
  87     <servlet>\r
  88         <servlet-name>RegistryWS</servlet-name>\r
  89         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  90         <load-on-startup>1</load-on-startup>\r
  91     </servlet>\r
  92     \r
  93     <servlet>\r
  94         <servlet-name>ClustalWS</servlet-name>\r
  95         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  96         <load-on-startup>1</load-on-startup>\r
  97     </servlet>\r
  98     \r
  99     <servlet>\r
 100         <servlet-name>ClustalOWS</servlet-name>\r
 101         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 102         <load-on-startup>1</load-on-startup>\r
 103     </servlet>\r
 104     \r
 105     <servlet>\r
 106         <servlet-name>MuscleWS</servlet-name>\r
 107         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 108         <load-on-startup>1</load-on-startup>\r
 109     </servlet>\r
 110     \r
 111     <servlet>\r
 112         <servlet-name>MafftWS</servlet-name>\r
 113         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 114         <load-on-startup>1</load-on-startup>\r
 115     </servlet>\r
 116     \r
 117     <servlet>\r
 118         <servlet-name>TcoffeeWS</servlet-name>\r
 119         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 120         <load-on-startup>1</load-on-startup>\r
 121     </servlet>\r
 122      \r
 123     <servlet>\r
 124         <servlet-name>ProbconsWS</servlet-name>\r
 125         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 126         <load-on-startup>1</load-on-startup>\r
 127     </servlet>\r
 128     \r
 129      <servlet>\r
 130         <servlet-name>AAConWS</servlet-name>\r
 131         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 132         <load-on-startup>1</load-on-startup>\r
 133     </servlet>\r
 134    \r
 135      <servlet>\r
 136         <servlet-name>JronnWS</servlet-name>\r
 137         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 138         <load-on-startup>1</load-on-startup>\r
 139     </servlet>\r
 140 \r
 141      <servlet>\r
 142         <servlet-name>DisemblWS</servlet-name>\r
 143         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 144                 <load-on-startup>1</load-on-startup>\r
 145     </servlet>\r
 146     \r
 147     <servlet>\r
 148         <servlet-name>GlobPlotWS</servlet-name>\r
 149         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 150         <load-on-startup>1</load-on-startup>\r
 151     </servlet>\r
 152     \r
 153      <servlet>\r
 154         <servlet-name>IUPredWS</servlet-name>\r
 155         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
 156         <load-on-startup>1</load-on-startup>\r
 157     </servlet>\r
 158    \r
 159     <servlet-mapping>\r
 160         <servlet-name>listings</servlet-name>\r
 161         <url-pattern>/</url-pattern>\r
 162         </servlet-mapping>\r
 163         \r
 164              \r
 165     <servlet-mapping>\r
 166         <servlet-name>DownloadRedirector</servlet-name>\r
 167         <url-pattern>/download</url-pattern>\r
 168         </servlet-mapping>\r
 169         \r
 170     <servlet-mapping>\r
 171         <servlet-name>DisplayStat</servlet-name>\r
 172         <url-pattern>/DisplayStat</url-pattern>\r
 173         </servlet-mapping>\r
 174         \r
 175         <servlet-mapping>\r
 176         <servlet-name>ServiceStatus</servlet-name>\r
 177         <url-pattern>/ServiceStatus</url-pattern>\r
 178         </servlet-mapping>\r
 179         \r
 180         <servlet-mapping>\r
 181         <servlet-name>HttpCodeResponseServiceStatus</servlet-name>\r
 182         <url-pattern>/HttpCodeResponseServiceStatus/*</url-pattern>\r
 183         </servlet-mapping>\r
 184         \r
 185          <servlet-mapping>\r
 186         <servlet-name>AnnualStat</servlet-name>\r
 187         <url-pattern>/AnnualStat</url-pattern>\r
 188         </servlet-mapping>  \r
 189     \r
 190      <servlet-mapping>\r
 191         <servlet-name>PublicAnnualStat</servlet-name>\r
 192         <url-pattern>/PublicAnnualStat</url-pattern>\r
 193         </servlet-mapping>  \r
 194     \r
 195     \r
 196     <servlet-mapping>\r
 197         <servlet-name>Joblist</servlet-name>\r
 198         <url-pattern>/Joblist</url-pattern>\r
 199         </servlet-mapping> \r
 200         \r
 201     <servlet-mapping>\r
 202         <servlet-name>RegistryWS</servlet-name>\r
 203         <url-pattern>/RegistryWS</url-pattern>\r
 204     </servlet-mapping>\r
 205     \r
 206     <servlet-mapping>\r
 207         <servlet-name>ClustalWS</servlet-name>\r
 208         <url-pattern>/ClustalWS</url-pattern>\r
 209     </servlet-mapping>\r
 210     \r
 211      <servlet-mapping>\r
 212         <servlet-name>ClustalOWS</servlet-name>\r
 213         <url-pattern>/ClustalOWS</url-pattern>\r
 214     </servlet-mapping>\r
 215     \r
 216     <servlet-mapping>\r
 217         <servlet-name>MuscleWS</servlet-name>\r
 218         <url-pattern>/MuscleWS</url-pattern>\r
 219     </servlet-mapping>\r
 220 \r
 221    <servlet-mapping>\r
 222         <servlet-name>MafftWS</servlet-name>\r
 223         <url-pattern>/MafftWS</url-pattern>\r
 224     </servlet-mapping>\r
 225     \r
 226    <servlet-mapping>\r
 227         <servlet-name>TcoffeeWS</servlet-name>\r
 228         <url-pattern>/TcoffeeWS</url-pattern>\r
 229    </servlet-mapping>\r
 230 \r
 231    <servlet-mapping>\r
 232         <servlet-name>ProbconsWS</servlet-name>\r
 233         <url-pattern>/ProbconsWS</url-pattern>\r
 234    </servlet-mapping>\r
 235  \r
 236    <servlet-mapping>\r
 237         <servlet-name>AAConWS</servlet-name>\r
 238         <url-pattern>/AAConWS</url-pattern>\r
 239    </servlet-mapping>\r
 240    \r
 241     <servlet-mapping>\r
 242         <servlet-name>JronnWS</servlet-name>\r
 243         <url-pattern>/JronnWS</url-pattern>\r
 244    </servlet-mapping>\r
 245    \r
 246    <servlet-mapping>\r
 247         <servlet-name>DisemblWS</servlet-name>\r
 248         <url-pattern>/DisemblWS</url-pattern>\r
 249    </servlet-mapping>\r
 250    \r
 251    <servlet-mapping>\r
 252         <servlet-name>GlobPlotWS</servlet-name>\r
 253         <url-pattern>/GlobPlotWS</url-pattern>\r
 254    </servlet-mapping>\r
 255    \r
 256     <servlet-mapping>\r
 257         <servlet-name>IUPredWS</servlet-name>\r
 258         <url-pattern>/IUPredWS</url-pattern>\r
 259    </servlet-mapping>\r
 260    \r
 261    <security-constraint>\r
 262     <web-resource-collection>\r
 263         <web-resource-name>Administrator pages</web-resource-name>\r
 264                 <!-- Prohibit access to any resources -->\r
 265         <url-pattern>/DisplayStat</url-pattern>\r
 266         <url-pattern>/Joblist</url-pattern>\r
 267         <url-pattern>/AnnualStat</url-pattern>\r
 268         <url-pattern>/conf/*</url-pattern>\r
 269                 <url-pattern>/binaries/*</url-pattern>\r
 270                 <url-pattern>/jobsout/*</url-pattern>\r
 271                 <url-pattern>/testsrc/*</url-pattern>\r
 272                 <url-pattern>/lib/*</url-pattern>\r
 273                 <url-pattern>/test-output/*</url-pattern>\r
 274                 <!-- Uncomment this to secure services status checker \r
 275                 <url-pattern>/HttpCodeResponseServiceStatus/*</url-pattern>\r
 276                 <url-pattern>/ServiceStatus</url-pattern>\r
 277                  -->\r
 278         <!-- No http-method means all methods are constrained -->\r
 279     </web-resource-collection>\r
 280     <auth-constraint>\r
 281       <role-name>admin</role-name>\r
 282     </auth-constraint>\r
 283    </security-constraint>\r
 284 \r
 285   <!-- unsupported HTTP methods -->\r
 286   <security-constraint>\r
 287         <web-resource-collection>\r
 288         <web-resource-name>unsupported HTTP methods</web-resource-name>\r
 289         <url-pattern>/*</url-pattern>\r
 290             <http-method>PUT</http-method>\r
 291             <http-method>DELETE</http-method>\r
 292             <http-method>TRACE</http-method>\r
 293             <http-method>OPTIONS</http-method>\r
 294         </web-resource-collection>\r
 295         <auth-constraint/>\r
 296   </security-constraint>\r
 297       <!-- Define the Login Configuration for this Application -->\r
 298   <login-config>\r
 299          <auth-method>BASIC</auth-method>\r
 300          <realm-name>JABAWS administrators</realm-name>\r
 301   </login-config>\r
 302   \r
 303     <!-- Security roles referenced by this web application -->\r
 304   <security-role>\r
 305     <description>\r
 306       The role that is required to log in and view JABAWS internals\r
 307     </description>\r
 308     <role-name>admin</role-name>\r
 309   </security-role>\r
 310   \r
 311 </web-app>\r