binaries/src/GLProbs-1.0/MSAClusterTree.h

   1 /***********************************************
   2  * # Copyright 2009-2010. Liu Yongchao
   3  * # Contact: Liu Yongchao, School of Computer Engineering,
   4  * #                     Nanyang Technological University.
   5  * # Emails:     liuy0039@ntu.edu.sg; nkcslyc@hotmail.com
   6  * #
   7  * # GPL version 3.0 applies.
   8  * #
   9  * ************************************************/
  10
  11 #ifndef _MSA_CLUSTER_TREE_H
  12 #define _MSA_CLUSTER_TREE_H
  13
  14 #include "MSAGuideTree.h"
  15
  16 class MSAClusterTree: public MSAGuideTree {
  17 public:
  18         MSAClusterTree(MSA* msa, VVF& distMatrix, int numSeqs);
  19         ~MSAClusterTree();
  20
  21         //construct the cluster tree
  22         void create();
  23 private:
  24         //generate the cluster tree
  25         void generateClusterTree();
  26 };
  27 #endif