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  70 <h1>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/data_structures.h File Reference</h1>
  71 <p>All datastructures and typedefs shared among the Vienna RNA Package can be found here.
  72 <a href="#_details">More...</a></p>
  73 <div class="dynheader">
  74 Include dependency graph for data_structures.h:</div>
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  86 </div>
  87
  88 <p><a href="data__structures_8h_source.html">Go to the source code of this file.</a></p>
  89 <table border="0" cellpadding="0" cellspacing="0">
  90 <tr><td colspan="2"><h2>Data Structures</h2></td></tr>
  91 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structplist.html">plist</a></td></tr>
  92 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">this datastructure is used as input parameter in functions of <a class="el" href="PS__dot_8h.html" title="Various functions for plotting RNA secondary structures, dot-plots and other visualizations...">PS_dot.h</a> and others  <a href="structplist.html#_details">More...</a><br/></td></tr>
  93 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structcpair.html">cpair</a></td></tr>
  94 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">this datastructure is used as input parameter in functions of PS_dot.c  <a href="structcpair.html#_details">More...</a><br/></td></tr>
  95 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structCOORDINATE.html">COORDINATE</a></td></tr>
  96 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">this is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type <a class="el" href="structCOORDINATE.html" title="this is a workarround for the SWIG Perl Wrapper RNA plot function that returns an...">COORDINATE</a>  <a href="structCOORDINATE.html#_details">More...</a><br/></td></tr>
  97 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsect.html">sect</a></td></tr>
  98 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Stack of partial structures for backtracking.  <a href="structsect.html#_details">More...</a><br/></td></tr>
  99 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structbondT.html">bondT</a></td></tr>
 100 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Base pair.  <a href="structbondT.html#_details">More...</a><br/></td></tr>
 101 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structbondTEn.html">bondTEn</a></td></tr>
 102 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Base pair with associated energy.  <a href="structbondTEn.html#_details">More...</a><br/></td></tr>
 103 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmodel__detailsT.html">model_detailsT</a></td></tr>
 104 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">The data structure that contains the complete model details used throughout the calculations.  <a href="structmodel__detailsT.html#_details">More...</a><br/></td></tr>
 105 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structparamT.html">paramT</a></td></tr>
 106 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">The datastructure that contains temperature scaled energy parameters.  <a href="structparamT.html#_details">More...</a><br/></td></tr>
 107 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpf__paramT.html">pf_paramT</a></td></tr>
 108 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">The datastructure that contains temperature scaled Boltzmann weights of the energy parameters.  <a href="structpf__paramT.html#_details">More...</a><br/></td></tr>
 109 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structPAIR.html">PAIR</a></td></tr>
 110 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Base pair data structure used in subopt.c.  <a href="structPAIR.html#_details">More...</a><br/></td></tr>
 111 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structINTERVAL.html">INTERVAL</a></td></tr>
 112 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Sequence interval stack element used in subopt.c.  <a href="structINTERVAL.html#_details">More...</a><br/></td></tr>
 113 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structSOLUTION.html">SOLUTION</a></td></tr>
 114 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Solution element from subopt.c.  <a href="structSOLUTION.html#_details">More...</a><br/></td></tr>
 115 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structcofoldF.html">cofoldF</a></td></tr>
 116 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structConcEnt.html">ConcEnt</a></td></tr>
 117 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpairpro.html">pairpro</a></td></tr>
 118 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpair__info.html">pair_info</a></td></tr>
 119 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">A base pair info structure.  <a href="structpair__info.html#_details">More...</a><br/></td></tr>
 120 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmove__t.html">move_t</a></td></tr>
 121 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structintermediate__t.html">intermediate_t</a></td></tr>
 122 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpath__t.html">path_t</a></td></tr>
 123 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__contrib.html">pu_contrib</a></td></tr>
 124 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">contributions to p_u  <a href="structpu__contrib.html#_details">More...</a><br/></td></tr>
 125 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html">interact</a></td></tr>
 126 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpu__out.html">pu_out</a></td></tr>
 127 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Collection of all free_energy of beeing unpaired values for output.  <a href="structpu__out.html#_details">More...</a><br/></td></tr>
 128 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structconstrain.html">constrain</a></td></tr>
 129 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">constraints for cofolding  <a href="structconstrain.html#_details">More...</a><br/></td></tr>
 130 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structduplexT.html">duplexT</a></td></tr>
 131 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structfolden.html">folden</a></td></tr>
 132 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsnoopT.html">snoopT</a></td></tr>
 133 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structdupVar.html">dupVar</a></td></tr>
 134 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structTwoDfold__solution.html">TwoDfold_solution</a></td></tr>
 135 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Solution element returned from TwoDfoldList.  <a href="structTwoDfold__solution.html#_details">More...</a><br/></td></tr>
 136 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structTwoDfold__vars.html">TwoDfold_vars</a></td></tr>
 137 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Variables compound for 2Dfold MFE folding.  <a href="structTwoDfold__vars.html#_details">More...</a><br/></td></tr>
 138 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structTwoDpfold__solution.html">TwoDpfold_solution</a></td></tr>
 139 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Solution element returned from TwoDpfoldList.  <a href="structTwoDpfold__solution.html#_details">More...</a><br/></td></tr>
 140 <tr><td class="memItemLeft" align="right" valign="top">struct &nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structTwoDpfold__vars.html">TwoDpfold_vars</a></td></tr>
 141 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Variables compound for 2Dfold partition function folding.  <a href="structTwoDpfold__vars.html#_details">More...</a><br/></td></tr>
 142 <tr><td colspan="2"><h2>Defines</h2></td></tr>
 143 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a05a5ffe718aa431d97419a12fb082379"></a><!-- doxytag: member="data_structures.h::MAXALPHA" ref="a05a5ffe718aa431d97419a12fb082379" args="" -->
 144 #define&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="data__structures_8h.html#a05a5ffe718aa431d97419a12fb082379">MAXALPHA</a>&nbsp;&nbsp;&nbsp;20</td></tr>
 145 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Maximal length of alphabet. <br/></td></tr>
 146 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a5ec740b80afb4906ba4311dbd8ddbd89"></a><!-- doxytag: member="data_structures.h::MAXDOS" ref="a5ec740b80afb4906ba4311dbd8ddbd89" args="" -->
 147 #define&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="data__structures_8h.html#a5ec740b80afb4906ba4311dbd8ddbd89">MAXDOS</a>&nbsp;&nbsp;&nbsp;1000</td></tr>
 148 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Maximum density of states discretization for subopt. <br/></td></tr>
 149 </table>
 150 <hr/><a name="_details"></a><h2>Detailed Description</h2>
 151 <p>All datastructures and typedefs shared among the Vienna RNA Package can be found here. </p>
 152 </div>
 153 <hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by&nbsp;
 154 <a href="http://www.doxygen.org/index.html">
 155 <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
 156 </body>
 157 </html>