binaries/src/ViennaRNA/doc/html/globals_vars.html

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   5 <title>RNAlib-2.1.2: Data Fields</title>
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  52 <div class="navigation" id="top">
  53   <div class="tabs">
  54     <ul>
  55       <li><a href="main.html"><span>Main&nbsp;Page</span></a></li>
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  57       <li><a href="modules.html"><span>Modules</span></a></li>
  58       <li><a href="annotated.html"><span>Data&nbsp;Structures</span></a></li>
  59       <li class="current"><a href="files.html"><span>Files</span></a></li>
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  62   <div class="tabs">
  63     <ul>
  64       <li><a href="files.html"><span>File&nbsp;List</span></a></li>
  65       <li class="current"><a href="globals.html"><span>Globals</span></a></li>
  66     </ul>
  67   </div>
  68   <div class="tabs">
  69     <ul>
  70       <li><a href="globals.html"><span>All</span></a></li>
  71       <li><a href="globals_func.html"><span>Functions</span></a></li>
  72       <li class="current"><a href="globals_vars.html"><span>Variables</span></a></li>
  73       <li><a href="globals_defs.html"><span>Defines</span></a></li>
  74     </ul>
  75   </div>
  76   <div class="tabs">
  77     <ul>
  78       <li><a href="#index_a"><span>a</span></a></li>
  79       <li><a href="#index_b"><span>b</span></a></li>
  80       <li><a href="#index_c"><span>c</span></a></li>
  81       <li><a href="#index_d"><span>d</span></a></li>
  82       <li><a href="#index_e"><span>e</span></a></li>
  83       <li><a href="#index_f"><span>f</span></a></li>
  84       <li><a href="#index_g"><span>g</span></a></li>
  85       <li><a href="#index_h"><span>h</span></a></li>
  86       <li><a href="#index_i"><span>i</span></a></li>
  87       <li><a href="#index_j"><span>j</span></a></li>
  88       <li><a href="#index_l"><span>l</span></a></li>
  89       <li><a href="#index_m"><span>m</span></a></li>
  90       <li><a href="#index_n"><span>n</span></a></li>
  91       <li><a href="#index_o"><span>o</span></a></li>
  92       <li><a href="#index_p"><span>p</span></a></li>
  93       <li><a href="#index_r"><span>r</span></a></li>
  94       <li><a href="#index_s"><span>s</span></a></li>
  95       <li><a href="#index_t"><span>t</span></a></li>
  96       <li><a href="#index_u"><span>u</span></a></li>
  97       <li><a href="#index_x"><span>x</span></a></li>
  98     </ul>
  99   </div>
 100 </div>
 101 <div class="contents">
 102 &nbsp;
 103
 104 <h3><a class="anchor" id="index_a">- a -</a></h3><ul>
 105 <li>aligned_line
 106 : <a class="el" href="dist__vars_8h.html#ac1605fe3448ad0a0b809c4fb8f6a854a">dist_vars.h</a>
 107 </li>
 108 </ul>
 109
 110
 111 <h3><a class="anchor" id="index_b">- b -</a></h3><ul>
 112 <li>backtrack_type
 113 : <a class="el" href="fold__vars_8h.html#a83bdb43472a259c71e69fa9f70f420c3">fold_vars.h</a>
 114 </li>
 115 <li>base_pair
 116 : <a class="el" href="fold__vars_8h.html#a0244a629b5ab4f58b77590c3dfd130dc">fold_vars.h</a>
 117 </li>
 118 </ul>
 119
 120
 121 <h3><a class="anchor" id="index_c">- c -</a></h3><ul>
 122 <li>circ
 123 : <a class="el" href="fold__vars_8h.html#af9202a1a09f5828dc731e2d9a10fa111">fold_vars.h</a>
 124 </li>
 125 <li>cost_matrix
 126 : <a class="el" href="dist__vars_8h.html#ab65d8ff14c6937612212526a60f59b3c">dist_vars.h</a>
 127 </li>
 128 <li>csv
 129 : <a class="el" href="fold__vars_8h.html#af2763d55a74663a5e60652b8880baa5b">fold_vars.h</a>
 130 </li>
 131 <li>cut_point
 132 : <a class="el" href="fold_8h.html#ab9b2c3a37a5516614c06d0ab54b97cda">fold.h</a>
 133 , <a class="el" href="fold__vars_8h.html#ab9b2c3a37a5516614c06d0ab54b97cda">fold_vars.h</a>
 134 </li>
 135 <li>cv_fact
 136 : <a class="el" href="group__consensus__fold.html#gaf3cbac6ff5d706d6e414677841ddf94c">alifold.h</a>
 137 </li>
 138 </ul>
 139
 140
 141 <h3><a class="anchor" id="index_d">- d -</a></h3><ul>
 142 <li>dangles
 143 : <a class="el" href="fold__vars_8h.html#a72b511ed1201f7e23ec437e468790d74">fold_vars.h</a>
 144 </li>
 145 <li>density_of_states
 146 : <a class="el" href="group__dos.html#ga937634a76b46a22530a74906f1957a9e">subopt.h</a>
 147 </li>
 148 <li>do_backtrack
 149 : <a class="el" href="fold__vars_8h.html#ad512b5dd4dbec60faccfe137bb474489">fold_vars.h</a>
 150 </li>
 151 </ul>
 152
 153
 154 <h3><a class="anchor" id="index_e">- e -</a></h3><ul>
 155 <li>edit_backtrack
 156 : <a class="el" href="dist__vars_8h.html#aa03194c513af6b860e7b33e370b82bdb">dist_vars.h</a>
 157 </li>
 158 <li>energy_set
 159 : <a class="el" href="fold__vars_8h.html#afb1ef1166da85092ae8a325e02dcae71">fold_vars.h</a>
 160 </li>
 161 <li>eos_debug
 162 : <a class="el" href="group__eval.html#ga567530678f6260a1a649a5beca5da4c5">fold.h</a>
 163 </li>
 164 </ul>
 165
 166
 167 <h3><a class="anchor" id="index_f">- f -</a></h3><ul>
 168 <li>F_monomer
 169 : <a class="el" href="group__pf__cofold.html#gac2d1851a710a8561390861155ca988fe">part_func_co.h</a>
 170 </li>
 171 <li>final_cost
 172 : <a class="el" href="group__inverse__fold.html#ga7f17d3b169af048d32bb185039a9c09c">inverse.h</a>
 173 </li>
 174 <li>fold_constrained
 175 : <a class="el" href="fold__vars_8h.html#a0afc287c2464866d94858c39175154af">fold_vars.h</a>
 176 </li>
 177 </ul>
 178
 179
 180 <h3><a class="anchor" id="index_g">- g -</a></h3><ul>
 181 <li>give_up
 182 : <a class="el" href="group__inverse__fold.html#ga7ec4ba51f86e1717a1e174264e4a75ce">inverse.h</a>
 183 </li>
 184 <li>gquad
 185 : <a class="el" href="fold__vars_8h.html#a25f2bdcdf56e813d288845484a13d704">fold_vars.h</a>
 186 </li>
 187 </ul>
 188
 189
 190 <h3><a class="anchor" id="index_h">- h -</a></h3><ul>
 191 <li>helix_size
 192 : <a class="el" href="RNAstruct_8h.html#a8218c0d581a3fba2a1a56a196abe19a5">RNAstruct.h</a>
 193 </li>
 194 </ul>
 195
 196
 197 <h3><a class="anchor" id="index_i">- i -</a></h3><ul>
 198 <li>iindx
 199 : <a class="el" href="fold__vars_8h.html#a92089ae3a51b5d75a14ce9cc29cc8317">fold_vars.h</a>
 200 </li>
 201 <li>inv_verbose
 202 : <a class="el" href="group__inverse__fold.html#gafcfc65fba01b9cca5946726ed9057a63">inverse.h</a>
 203 </li>
 204 </ul>
 205
 206
 207 <h3><a class="anchor" id="index_j">- j -</a></h3><ul>
 208 <li>james_rule
 209 : <a class="el" href="fold__vars_8h.html#af349001ad3b4d008d0051d935b1b6261">fold_vars.h</a>
 210 </li>
 211 </ul>
 212
 213
 214 <h3><a class="anchor" id="index_l">- l -</a></h3><ul>
 215 <li>logML
 216 : <a class="el" href="fold_8h.html#a80c3c5fd35e7479704cc91d2d0367743">fold.h</a>
 217 , <a class="el" href="fold__vars_8h.html#a80c3c5fd35e7479704cc91d2d0367743">fold_vars.h</a>
 218 </li>
 219 <li>loop_degree
 220 : <a class="el" href="RNAstruct_8h.html#aef14e2f8ab3f61e8e659ba6b9003b08a">RNAstruct.h</a>
 221 </li>
 222 <li>loop_size
 223 : <a class="el" href="RNAstruct_8h.html#a3f31e0e48125601bfa57b52f8b038e8e">RNAstruct.h</a>
 224 </li>
 225 <li>loops
 226 : <a class="el" href="RNAstruct_8h.html#a439fcb9f8d4f9f4d2227fde5fbfecb30">RNAstruct.h</a>
 227 </li>
 228 </ul>
 229
 230
 231 <h3><a class="anchor" id="index_m">- m -</a></h3><ul>
 232 <li>mirnatog
 233 : <a class="el" href="group__pf__cofold.html#gaff27888c4088cc1f60fd59cbd589474c">part_func_co.h</a>
 234 </li>
 235 </ul>
 236
 237
 238 <h3><a class="anchor" id="index_n">- n -</a></h3><ul>
 239 <li>nc_fact
 240 : <a class="el" href="group__consensus__fold.html#ga502948a122a2af5b914355b1f3ea2f61">alifold.h</a>
 241 </li>
 242 <li>no_closingGU
 243 : <a class="el" href="fold__vars_8h.html#aa8d1c7b92489179e1eafa562b7bdd259">fold_vars.h</a>
 244 </li>
 245 <li>noGU
 246 : <a class="el" href="fold__vars_8h.html#abf380d09e4f1ab94fc6af57cf0ad5d32">fold_vars.h</a>
 247 </li>
 248 <li>noLonelyPairs
 249 : <a class="el" href="fold__vars_8h.html#a097eccaabd6ae8b4fef83cccff85bb5d">fold_vars.h</a>
 250 </li>
 251 <li>nonstandards
 252 : <a class="el" href="fold__vars_8h.html#a2695d91cc535d09c2eae5c3884e2ec64">fold_vars.h</a>
 253 </li>
 254 </ul>
 255
 256
 257 <h3><a class="anchor" id="index_o">- o -</a></h3><ul>
 258 <li>oldAliEn
 259 : <a class="el" href="fold__vars_8h.html#ac408868ba00671cbc7d1d535105af045">fold_vars.h</a>
 260 </li>
 261 </ul>
 262
 263
 264 <h3><a class="anchor" id="index_p">- p -</a></h3><ul>
 265 <li>pairs
 266 : <a class="el" href="RNAstruct_8h.html#a6341cbb704924824e0236c1dce791032">RNAstruct.h</a>
 267 </li>
 268 <li>pf_scale
 269 : <a class="el" href="fold__vars_8h.html#ad3b22044065acc6dee0af68931b52cfd">fold_vars.h</a>
 270 </li>
 271 <li>pr
 272 : <a class="el" href="fold__vars_8h.html#a0f5757427fd5f2f79d6fca0081cd5a52">fold_vars.h</a>
 273 </li>
 274 <li>print_energy
 275 : <a class="el" href="group__subopt__wuchty.html#ga5e57d914bcb5feeecdf520e25313fcfe">subopt.h</a>
 276 </li>
 277 </ul>
 278
 279
 280 <h3><a class="anchor" id="index_r">- r -</a></h3><ul>
 281 <li>ribo
 282 : <a class="el" href="fold__vars_8h.html#a0656afca1d2853f9ee6591172f5638de">fold_vars.h</a>
 283 </li>
 284 <li>RibosumFile
 285 : <a class="el" href="fold__vars_8h.html#a5dbaa0cca2c8c82048a0f0e38e164944">fold_vars.h</a>
 286 </li>
 287 <li>rna_plot_type
 288 : <a class="el" href="plot__layouts_8h.html#a5964c4581431b098b80027d6e14dcdd4">plot_layouts.h</a>
 289 </li>
 290 </ul>
 291
 292
 293 <h3><a class="anchor" id="index_s">- s -</a></h3><ul>
 294 <li>st_back
 295 : <a class="el" href="group__subopt__stochbt.html#gacd79b1a570e6ad9be24cb11fe8cae30a">part_func.h</a>
 296 </li>
 297 <li>subopt_sorted
 298 : <a class="el" href="group__subopt__wuchty.html#ga873cf8ed69e0437f8efa8b1fec854a0e">subopt.h</a>
 299 </li>
 300 <li>symbolset
 301 : <a class="el" href="group__inverse__fold.html#ga8f791e7740a5a28b9f6fafb4e60301d9">inverse.h</a>
 302 </li>
 303 </ul>
 304
 305
 306 <h3><a class="anchor" id="index_t">- t -</a></h3><ul>
 307 <li>temperature
 308 : <a class="el" href="fold__vars_8h.html#ab4b11c8d9c758430960896bc3fe82ead">fold_vars.h</a>
 309 </li>
 310 <li>tetra_loop
 311 : <a class="el" href="fold__vars_8h.html#a4f6265bdf0ead7ff4628a360adbfd77e">fold_vars.h</a>
 312 </li>
 313 </ul>
 314
 315
 316 <h3><a class="anchor" id="index_u">- u -</a></h3><ul>
 317 <li>uniq_ML
 318 : <a class="el" href="fold_8h.html#a6c5655c8b272e3e6cab74dd0f540294f">fold.h</a>
 319 </li>
 320 <li>unpaired
 321 : <a class="el" href="RNAstruct_8h.html#add2f952597e02d66e1116a9d11d252d6">RNAstruct.h</a>
 322 </li>
 323 </ul>
 324
 325
 326 <h3><a class="anchor" id="index_x">- x -</a></h3><ul>
 327 <li>xsubi
 328 : <a class="el" href="utils_8h.html#af9a866c8417afda7368bbac939ab3c47">utils.h</a>
 329 </li>
 330 </ul>
 331 </div>
 332 <hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by&nbsp;
 333 <a href="http://www.doxygen.org/index.html">
 334 <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
 335 </body>
 336 </html>