binaries/src/ViennaRNA/doc/latex/energy__const_8h_source.tex

   1 \hypertarget{energy__const_8h}{\section{energy\-\_\-const.\-h}
   2 \label{energy__const_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/energy\-\_\-const.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/energy\-\_\-const.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_ENERGY\_CONST\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_ENERGY\_CONST\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00004 \textcolor{preprocessor}{#include <limits.h>}
  10 00005
  11 \hypertarget{energy__const_8h_source_l00012}{}\hyperlink{energy__const_8h_ab1e4a8d82f24ed5db01dde5f25269cf1}{00012} \textcolor{preprocessor}{#define GASCONST 1.98717  }\textcolor{comment}{/* in [cal/K] */}\textcolor{preprocessor}{}
  12 00013 \textcolor{preprocessor}{}
  13 \hypertarget{energy__const_8h_source_l00014}{}\hyperlink{energy__const_8h_a307c72605e3713972b4f4fb2d53ea20e}{00014} \textcolor{preprocessor}{#define K0  273.15}
  14 00015 \textcolor{preprocessor}{}
  15 \hypertarget{energy__const_8h_source_l00016}{}\hyperlink{energy__const_8h_a12c2040f25d8e3a7b9e1c2024c618cb6}{00016} \textcolor{preprocessor}{#define INF 10000000 }\textcolor{comment}{/* (INT\_MAX/10) */}\textcolor{preprocessor}{}
  16 00017 \textcolor{preprocessor}{}
  17 00018 \textcolor{preprocessor}{#define EMAX (INF/10)}
  18 00019 \textcolor{preprocessor}{}
  19 \hypertarget{energy__const_8h_source_l00020}{}\hyperlink{energy__const_8h_a5064c29ab2d1e20c2304b3c67562774d}{00020} \textcolor{preprocessor}{#define FORBIDDEN 9999}
  20 00021 \textcolor{preprocessor}{}
  21 \hypertarget{energy__const_8h_source_l00022}{}\hyperlink{energy__const_8h_a96a9822fa134450197dd454b1478a193}{00022} \textcolor{preprocessor}{#define BONUS 10000}
  22 00023 \textcolor{preprocessor}{}
  23 \hypertarget{energy__const_8h_source_l00024}{}\hyperlink{energy__const_8h_a5e75221c779d618eab81e096f37e32ce}{00024} \textcolor{preprocessor}{#define NBPAIRS 7}
  24 00025 \textcolor{preprocessor}{}
  25 \hypertarget{energy__const_8h_source_l00026}{}\hyperlink{energy__const_8h_ae646250fd59311356c7e5722a81c3a96}{00026} \textcolor{preprocessor}{#define TURN 3}
  26 00027 \textcolor{preprocessor}{}
  27 \hypertarget{energy__const_8h_source_l00028}{}\hyperlink{energy__const_8h_ad1bd6eabac419670ddd3c9ed82145988}{00028} \textcolor{preprocessor}{#define MAXLOOP 30}
  28 00029 \textcolor{preprocessor}{}
  29 00030 \textcolor{preprocessor}{#define   VRNA\_GQUAD\_MISMATCH\_PENALTY   300   }\textcolor{comment}{/* penalty for incompatible nucleotides in an alignment that
  30        destruct a gquad layer */}\textcolor{preprocessor}{}
  31 00031 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   VRNA\_GQUAD\_MISMATCH\_NUM\_ALI   1   }\textcolor{comment}{/* maximum number of mismatching sequences in the alignment
  32        when gquad should be formed */}\textcolor{preprocessor}{}
  33 00032 \textcolor{preprocessor}{}
  34 00033 \textcolor{preprocessor}{#endif}
  35 \end{DoxyCode}