binaries/src/ViennaRNA/doc/latex/params_8h.tex

   1 \hypertarget{params_8h}{\section{/home/asherstnev/\-Projects/\-Java.projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/params.h File Reference}
   2 \label{params_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/params.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/params.\-h}}
   3 }
   4 Include dependency graph for params.\-h\-:
   5 \nopagebreak
   6 \begin{figure}[H]
   7 \begin{center}
   8 \leavevmode
   9 \includegraphics[width=250pt]{params_8h__incl}
  10 \end{center}
  11 \end{figure}
  12 This graph shows which files directly or indirectly include this file\-:
  13 \nopagebreak
  14 \begin{figure}[H]
  15 \begin{center}
  16 \leavevmode
  17 \includegraphics[width=250pt]{params_8h__dep__incl}
  18 \end{center}
  19 \end{figure}
  20 \subsection*{Functions}
  21 \begin{DoxyCompactItemize}
  22 \item
  23 \hyperlink{structparamT}{param\-T} $\ast$ \hyperlink{group__energy__parameters_ga527ef619cd8210b84d5d53be1e0e29b6}{scale\-\_\-parameters} (void)
  24 \begin{DoxyCompactList}\small\item\em Get precomputed energy contributions for all the known loop types. \end{DoxyCompactList}\item
  25 \hyperlink{structparamT}{param\-T} $\ast$ \hyperlink{group__energy__parameters_gac2f3ca440b7eaf4d999fb27da949fe72}{get\-\_\-scaled\-\_\-parameters} (double \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature}, \hyperlink{structmodel__detailsT}{model\-\_\-details\-T} md)
  26 \begin{DoxyCompactList}\small\item\em Get precomputed energy contributions for all the known loop types. \end{DoxyCompactList}\item
  27 \hyperlink{structpf__paramT}{pf\-\_\-param\-T} $\ast$ \hyperlink{group__energy__parameters_gab85f6b6da051f380371deb0d8921bdba}{get\-\_\-scaled\-\_\-pf\-\_\-parameters} (void)
  28 \item
  29 \hyperlink{structpf__paramT}{pf\-\_\-param\-T} $\ast$ \hyperlink{group__energy__parameters_ga6fc2f3eef5a3024d44963ac59a42e39d}{get\-\_\-boltzmann\-\_\-factors} (double \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature}, double beta\-Scale, \hyperlink{structmodel__detailsT}{model\-\_\-details\-T} md, double \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf\-\_\-scale})
  30 \begin{DoxyCompactList}\small\item\em Get precomputed Boltzmann factors of the loop type dependent energy contributions with independent thermodynamic temperature. \end{DoxyCompactList}\item
  31 \hyperlink{structpf__paramT}{pf\-\_\-param\-T} $\ast$ \hyperlink{group__energy__parameters_gacba212326a051734797e65987260fdd0}{get\-\_\-boltzmann\-\_\-factor\-\_\-copy} (\hyperlink{structpf__paramT}{pf\-\_\-param\-T} $\ast$parameters)
  32 \begin{DoxyCompactList}\small\item\em Get a copy of already precomputed Boltzmann factors. \end{DoxyCompactList}\item
  33 \hypertarget{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}{\hyperlink{structpf__paramT}{pf\-\_\-param\-T} $\ast$ \hyperlink{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}{get\-\_\-scaled\-\_\-alipf\-\_\-parameters} (unsigned int n\-\_\-seq)}\label{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}
  34
  35 \begin{DoxyCompactList}\small\item\em Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) \end{DoxyCompactList}\item
  36 \hypertarget{group__energy__parameters_gaaa049a8c9f1c2ed4398cb1b5a3d65a66}{P\-U\-B\-L\-I\-C \hyperlink{structpf__paramT}{pf\-\_\-param\-T} $\ast$ \hyperlink{group__energy__parameters_gaaa049a8c9f1c2ed4398cb1b5a3d65a66}{get\-\_\-boltzmann\-\_\-factors\-\_\-ali} (unsigned int n\-\_\-seq, double \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature}, double beta\-Scale, \hyperlink{structmodel__detailsT}{model\-\_\-details\-T} md, double \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf\-\_\-scale})}\label{group__energy__parameters_gaaa049a8c9f1c2ed4398cb1b5a3d65a66}
  37
  38 \begin{DoxyCompactList}\small\item\em Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) with independent thermodynamic temperature. \end{DoxyCompactList}\end{DoxyCompactItemize}