binaries/src/ViennaRNA/doc/latex/params_8h.tex

   1 \hypertarget{params_8h}{
   2 \section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/params.h File Reference}
   3 \label{params_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/params.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/params.h}}
   4 }
   5 Include dependency graph for params.h:\nopagebreak
   6 \begin{figure}[H]
   7 \begin{center}
   8 \leavevmode
   9 \includegraphics[width=212pt]{params_8h__incl}
  10 \end{center}
  11 \end{figure}
  12 This graph shows which files directly or indirectly include this file:\nopagebreak
  13 \begin{figure}[H]
  14 \begin{center}
  15 \leavevmode
  16 \includegraphics[width=227pt]{params_8h__dep__incl}
  17 \end{center}
  18 \end{figure}
  19 \subsection*{Functions}
  20 \begin{DoxyCompactItemize}
  21 \item
  22 \hyperlink{structparamT}{paramT} $\ast$ \hyperlink{group__energy__parameters_ga527ef619cd8210b84d5d53be1e0e29b6}{scale\_\-parameters} (void)
  23 \begin{DoxyCompactList}\small\item\em Get precomputed energy contributions for all the known loop types. \item\end{DoxyCompactList}\item
  24 \hyperlink{structparamT}{paramT} $\ast$ \hyperlink{group__energy__parameters_gac2f3ca440b7eaf4d999fb27da949fe72}{get\_\-scaled\_\-parameters} (double \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature}, \hyperlink{structmodel__detailsT}{model\_\-detailsT} md)
  25 \begin{DoxyCompactList}\small\item\em Get precomputed energy contributions for all the known loop types. \item\end{DoxyCompactList}\item
  26 \hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$ \hyperlink{group__energy__parameters_gab85f6b6da051f380371deb0d8921bdba}{get\_\-scaled\_\-pf\_\-parameters} (void)
  27 \item
  28 \hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$ \hyperlink{group__energy__parameters_ga6fc2f3eef5a3024d44963ac59a42e39d}{get\_\-boltzmann\_\-factors} (double \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature}, double betaScale, \hyperlink{structmodel__detailsT}{model\_\-detailsT} md, double \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf\_\-scale})
  29 \begin{DoxyCompactList}\small\item\em Get precomputed Boltzmann factors of the loop type dependent energy contributions with independent thermodynamic temperature. \item\end{DoxyCompactList}\item
  30 \hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$ \hyperlink{group__energy__parameters_gacba212326a051734797e65987260fdd0}{get\_\-boltzmann\_\-factor\_\-copy} (\hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$parameters)
  31 \begin{DoxyCompactList}\small\item\em Get a copy of already precomputed Boltzmann factors. \item\end{DoxyCompactList}\item
  32 \hypertarget{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}{
  33 \hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$ \hyperlink{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}{get\_\-scaled\_\-alipf\_\-parameters} (unsigned int n\_\-seq)}
  34 \label{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}
  35
  36 \begin{DoxyCompactList}\small\item\em Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant). \item\end{DoxyCompactList}\item
  37 \hypertarget{group__energy__parameters_gaf0c74574b40f2778556535bf9d382828}{
  38 \hyperlink{structpf__paramT}{pf\_\-paramT} $\ast$ \hyperlink{group__energy__parameters_gaf0c74574b40f2778556535bf9d382828}{get\_\-boltzmann\_\-factors\_\-ali} (unsigned int n\_\-seq, double \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature}, double betaScale, \hyperlink{structmodel__detailsT}{model\_\-detailsT} md, double \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf\_\-scale})}
  39 \label{group__energy__parameters_gaf0c74574b40f2778556535bf9d382828}
  40
  41 \begin{DoxyCompactList}\small\item\em Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) with independent thermodynamic temperature. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
  42
  43
  44 \subsection{Detailed Description}