binaries/src/ViennaRNA/interfaces/Perl/Makefile

   1 # Makefile.in generated by automake 1.11.6 from Makefile.am.
   2 # interfaces/Perl/Makefile.  Generated from Makefile.in by configure.
   3
   4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
   5 # 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011 Free Software
   6 # Foundation, Inc.
   7 # This Makefile.in is free software; the Free Software Foundation
   8 # gives unlimited permission to copy and/or distribute it,
   9 # with or without modifications, as long as this notice is preserved.
  10
  11 # This program is distributed in the hope that it will be useful,
  12 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
  13 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
  14 # PARTICULAR PURPOSE.
  15
  16
  17
  18 am__make_dryrun = \
  19   { \
  20     am__dry=no; \
  21     case $$MAKEFLAGS in \
  22       *\\[\ \   ]*) \
  23         echo 'am--echo: ; @echo "AM"  OK' | $(MAKE) -f - 2>/dev/null \
  24           | grep '^AM OK$$' >/dev/null || am__dry=yes;; \
  25       *) \
  26         for am__flg in $$MAKEFLAGS; do \
  27           case $$am__flg in \
  28             *=*|--*) ;; \
  29             *n*) am__dry=yes; break;; \
  30           esac; \
  31         done;; \
  32     esac; \
  33     test $$am__dry = yes; \
  34   }
  35 pkgdatadir = $(datadir)/ViennaRNA
  36 pkgincludedir = $(includedir)/ViennaRNA
  37 pkglibdir = $(libdir)/ViennaRNA
  38 pkglibexecdir = $(libexecdir)/ViennaRNA
  39 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
  40 install_sh_DATA = $(install_sh) -c -m 644
  41 install_sh_PROGRAM = $(install_sh) -c
  42 install_sh_SCRIPT = $(install_sh) -c
  43 INSTALL_HEADER = $(INSTALL_DATA)
  44 transform = $(program_transform_name)
  45 NORMAL_INSTALL = :
  46 PRE_INSTALL = :
  47 POST_INSTALL = :
  48 NORMAL_UNINSTALL = :
  49 PRE_UNINSTALL = :
  50 POST_UNINSTALL = :
  51 build_triplet = x86_64-unknown-linux-gnu
  52 host_triplet = x86_64-unknown-linux-gnu
  53 subdir = interfaces/Perl
  54 DIST_COMMON = $(srcdir)/Makefile.PL.in $(srcdir)/Makefile.am \
  55         $(srcdir)/Makefile.in
  56 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
  57 am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
  58         $(top_srcdir)/m4/package.m4 $(top_srcdir)/configure.ac
  59 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
  60         $(ACLOCAL_M4)
  61 mkinstalldirs = $(install_sh) -d
  62 CONFIG_HEADER = $(top_builddir)/config.h
  63 CONFIG_CLEAN_FILES = Makefile.PL
  64 CONFIG_CLEAN_VPATH_FILES =
  65 AM_V_GEN = $(am__v_GEN_$(V))
  66 am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY))
  67 am__v_GEN_0 = @echo "  GEN   " $@;
  68 AM_V_at = $(am__v_at_$(V))
  69 am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY))
  70 am__v_at_0 = @
  71 DIST_SOURCES =
  72 am__can_run_installinfo = \
  73   case $$AM_UPDATE_INFO_DIR in \
  74     n|no|NO) false;; \
  75     *) (install-info --version) >/dev/null 2>&1;; \
  76   esac
  77 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
  78 ACLOCAL = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run aclocal-1.11
  79 AMTAR = $${TAR-tar}
  80 AM_DEFAULT_VERBOSITY = 0
  81 AUTOCONF = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run autoconf
  82 AUTOHEADER = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run autoheader
  83 AUTOMAKE = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run automake-1.11
  84 AWK = gawk
  85 CC = gcc
  86 CCDEPMODE = depmode=gcc3
  87 CFLAGS = -g -O2
  88 CLUSTER_DIR =
  89 CPP = gcc -E
  90 CPPFLAGS =
  91 CXX = g++
  92 CXXCPP = g++ -E
  93 CXXDEPMODE = depmode=gcc3
  94 CXXFLAGS = -g -O2
  95 CXXLD = g++
  96 CYGPATH_W = echo
  97 DEFS = -DHAVE_CONFIG_H
  98 DEPDIR = .deps
  99 DOXYGEN_CMD_LATEX = /usr/bin/latex
 100 DOXYGEN_CMD_MAKEINDEX = /usr/bin/makeindex
 101 DOXYGEN_CONF = doxygen.conf
 102 DOXYGEN_DOCDIR = doc
 103 DOXYGEN_GENERATE_HTML = YES
 104 DOXYGEN_GENERATE_LATEX = YES
 105 DOXYGEN_HAVE_DOT = YES
 106 DOXYGEN_PROJECT_NAME = RNAlib-2.1.2
 107 DOXYGEN_SRCDIR = .
 108 DOXYGEN_WITH_PDFLATEX = YES
 109 ECHO_C =
 110 ECHO_N = -n
 111 ECHO_T =
 112 EGREP = /bin/grep -E
 113 EXEEXT =
 114 FPIC = -fpic
 115 GREP = /bin/grep
 116 INSTALL = /usr/bin/install -c
 117 INSTALL_DATA = ${INSTALL} -m 644
 118 INSTALL_PROGRAM = ${INSTALL}
 119 INSTALL_SCRIPT = ${INSTALL}
 120 INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
 121 ISODATE = 2017-04-11
 122 LDFLAGS =
 123 LIBOBJS =
 124 LIBS = -lm
 125 LIBSVM_DIR = libsvm-2.91
 126 LTLIBOBJS =
 127 MAKEINFO = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/missing --run makeinfo
 128 MKDIR_P = /bin/mkdir -p
 129 OBJEXT = o
 130 OPENMP_CFLAGS = -fopenmp
 131 PACKAGE = ViennaRNA
 132 PACKAGE_BUGREPORT = rna@tbi.univie.ac.at
 133 PACKAGE_NAME = ViennaRNA
 134 PACKAGE_STRING = ViennaRNA 2.1.2
 135 PACKAGE_TARNAME = ViennaRNA
 136 PACKAGE_URL = http://www.tbi.univie.ac.a/~ivo/RNA
 137 PACKAGE_VERSION = 2.1.2
 138 PATH_SEPARATOR = :
 139 PERLPREFIX =
 140 PERL_INTERFACE = Perl
 141 POW_LIB =
 142 PYTHON_INTERFACE =
 143 PerlCmd = /usr/bin/perl
 144 PythonCmd = /homes/fmmarquesmadeira/.local/anaconda/envs/python3/bin/python
 145 RANLIB = ranlib
 146 REFERENCE_MANUAL_PDF_NAME = RNAlib-2.1.2.pdf
 147 REFERENCE_MANUAL_TAGFILE = RNAlib-2.1.2.tag
 148 SET_MAKE =
 149 SHELL = /bin/sh
 150 STRIP =
 151 VERSION = 2.1.2
 152 abs_builddir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/interfaces/Perl
 153 abs_srcdir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/interfaces/Perl
 154 abs_top_builddir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA
 155 abs_top_srcdir = /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA
 156 ac_ct_CC = gcc
 157 ac_ct_CXX = g++
 158 am__include = include
 159 am__leading_dot = .
 160 am__quote =
 161 am__tar = $${TAR-tar} chof - "$$tardir"
 162 am__untar = $${TAR-tar} xf -
 163 bindir = ${exec_prefix}/bin
 164 build = x86_64-unknown-linux-gnu
 165 build_alias =
 166 build_cpu = x86_64
 167 build_os = linux-gnu
 168 build_vendor = unknown
 169 builddir = .
 170 datadir = ${datarootdir}
 171 datarootdir = ${prefix}/share
 172 docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
 173 dot = /usr/bin/dot
 174 doxygen = /usr/bin/doxygen
 175 dvidir = ${docdir}
 176 egrep = /bin/egrep
 177 exec_prefix = ${prefix}
 178 host = x86_64-unknown-linux-gnu
 179 host_alias =
 180 host_cpu = x86_64
 181 host_os = linux-gnu
 182 host_vendor = unknown
 183 htmldir = ${docdir}
 184 includedir = ${prefix}/include
 185 infodir = ${datarootdir}/info
 186 install_sh = ${SHELL} /homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/config/install-sh
 187 latex = /usr/bin/latex
 188 libdir = ${exec_prefix}/lib
 189 libexecdir = ${exec_prefix}/libexec
 190 localedir = ${datarootdir}/locale
 191 localstatedir = ${prefix}/var
 192 makeindex = /usr/bin/makeindex
 193 mandir = ${datarootdir}/man
 194 mkdir_p = /bin/mkdir -p
 195 oldincludedir = /usr/include
 196 pdfdir = ${docdir}
 197 pdflatex = no
 198 perl = /usr/bin/perl
 199 prefix = /usr/local
 200 program_transform_name = s,x,x,
 201 psdir = ${docdir}
 202 sbindir = ${exec_prefix}/sbin
 203 sharedstatedir = ${prefix}/com
 204 srcdir = .
 205 subdirs =  Kinfold RNAforester
 206 sysconfdir = ${prefix}/etc
 207 target_alias =
 208 top_build_prefix = ../../
 209 top_builddir = ../..
 210 top_srcdir = ../..
 211 #USE_LARGE_PF =
 212 USE_LARGE_PF = -DLARGE_PF
 213 SOURCES = Makefile.PL RNA.pod
 214 EXTRA_DIST = RNA.pm RNA_wrap.c RNAfold.pl test.pl RNAfold.cgi Makefile.PL
 215 all: all-am
 216
 217 .SUFFIXES:
 218 $(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
 219         @for dep in $?; do \
 220           case '$(am__configure_deps)' in \
 221             *$$dep*) \
 222               ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
 223                 && { if test -f $@; then exit 0; else break; fi; }; \
 224               exit 1;; \
 225           esac; \
 226         done; \
 227         echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu interfaces/Perl/Makefile'; \
 228         $(am__cd) $(top_srcdir) && \
 229           $(AUTOMAKE) --gnu interfaces/Perl/Makefile
 230 .PRECIOUS: Makefile
 231 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 232         @case '$?' in \
 233           *config.status*) \
 234             cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
 235           *) \
 236             echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
 237             cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
 238         esac;
 239
 240 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
 241         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 242
 243 $(top_srcdir)/configure:  $(am__configure_deps)
 244         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 245 $(ACLOCAL_M4):  $(am__aclocal_m4_deps)
 246         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 247 $(am__aclocal_m4_deps):
 248 Makefile.PL: $(top_builddir)/config.status $(srcdir)/Makefile.PL.in
 249         cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
 250 tags: TAGS
 251 TAGS:
 252
 253 ctags: CTAGS
 254 CTAGS:
 255
 256
 257 distdir: $(DISTFILES)
 258         @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
 259         topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
 260         list='$(DISTFILES)'; \
 261           dist_files=`for file in $$list; do echo $$file; done | \
 262           sed -e "s|^$$srcdirstrip/||;t" \
 263               -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
 264         case $$dist_files in \
 265           */*) $(MKDIR_P) `echo "$$dist_files" | \
 266                            sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
 267                            sort -u` ;; \
 268         esac; \
 269         for file in $$dist_files; do \
 270           if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
 271           if test -d $$d/$$file; then \
 272             dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
 273             if test -d "$(distdir)/$$file"; then \
 274               find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
 275             fi; \
 276             if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
 277               cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
 278               find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
 279             fi; \
 280             cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
 281           else \
 282             test -f "$(distdir)/$$file" \
 283             || cp -p $$d/$$file "$(distdir)/$$file" \
 284             || exit 1; \
 285           fi; \
 286         done
 287 check-am: all-am
 288         $(MAKE) $(AM_MAKEFLAGS) check-local
 289 check: check-am
 290 all-am: Makefile all-local
 291 installdirs:
 292 install: install-am
 293 install-exec: install-exec-am
 294 install-data: install-data-am
 295 uninstall: uninstall-am
 296
 297 install-am: all-am
 298         @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
 299
 300 installcheck: installcheck-am
 301 install-strip:
 302         if test -z '$(STRIP)'; then \
 303           $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
 304             install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
 305               install; \
 306         else \
 307           $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
 308             install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
 309             "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
 310         fi
 311 mostlyclean-generic:
 312
 313 clean-generic:
 314
 315 distclean-generic:
 316         -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
 317         -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
 318
 319 maintainer-clean-generic:
 320         @echo "This command is intended for maintainers to use"
 321         @echo "it deletes files that may require special tools to rebuild."
 322 clean: clean-am
 323
 324 clean-am: clean-generic mostlyclean-am
 325
 326 distclean: distclean-am
 327         -rm -f Makefile
 328 distclean-am: clean-am distclean-generic
 329
 330 dvi: dvi-am
 331
 332 dvi-am:
 333
 334 html: html-am
 335
 336 html-am:
 337
 338 info: info-am
 339
 340 info-am:
 341
 342 install-data-am:
 343
 344 install-dvi: install-dvi-am
 345
 346 install-dvi-am:
 347
 348 install-exec-am: install-exec-local
 349
 350 install-html: install-html-am
 351
 352 install-html-am:
 353
 354 install-info: install-info-am
 355
 356 install-info-am:
 357
 358 install-man:
 359
 360 install-pdf: install-pdf-am
 361
 362 install-pdf-am:
 363
 364 install-ps: install-ps-am
 365
 366 install-ps-am:
 367
 368 installcheck-am:
 369
 370 maintainer-clean: maintainer-clean-am
 371         -rm -f Makefile
 372 maintainer-clean-am: distclean-am maintainer-clean-generic \
 373         maintainer-clean-local
 374
 375 mostlyclean: mostlyclean-am
 376
 377 mostlyclean-am: mostlyclean-generic mostlyclean-local
 378
 379 pdf: pdf-am
 380
 381 pdf-am:
 382
 383 ps: ps-am
 384
 385 ps-am:
 386
 387 uninstall-am:
 388
 389 .MAKE: check-am install-am install-strip
 390
 391 .PHONY: all all-am all-local check check-am check-local clean \
 392         clean-generic distclean distclean-generic distdir dvi dvi-am \
 393         html html-am info info-am install install-am install-data \
 394         install-data-am install-dvi install-dvi-am install-exec \
 395         install-exec-am install-exec-local install-html \
 396         install-html-am install-info install-info-am install-man \
 397         install-pdf install-pdf-am install-ps install-ps-am \
 398         install-strip installcheck installcheck-am installdirs \
 399         maintainer-clean maintainer-clean-generic \
 400         maintainer-clean-local mostlyclean mostlyclean-generic \
 401         mostlyclean-local pdf pdf-am ps ps-am uninstall uninstall-am
 402
 403
 404 Makefile.perl: Makefile.PL Makefile
 405         /usr/bin/perl Makefile.PL PREFIX=$(prefix) LDDLFLAGS="${LDFLAGS} -shared"
 406
 407 # the perl command repairs some errors in the SWIG CVS version
 408 RNA_wrap.c: ../RNA.i ../tmaps.i
 409         swig -perl5 -shadow $(USE_LARGE_PF) -I../ RNA.i
 410
 411 all-local: RNA_wrap.c Makefile.perl
 412         $(MAKE) -f Makefile.perl
 413
 414 install-exec-local: all-local
 415         $(MAKE) -f Makefile.perl install
 416
 417 check-local: all-local
 418         $(MAKE) -f Makefile.perl test
 419
 420 mostlyclean-local: Makefile.perl
 421         $(MAKE) -f Makefile.perl clean
 422
 423 # remove all generated content
 424 maintainer-clean-local:
 425         -rm -f RNA_wrap.c Makefile.perl.old RNA.pm
 426
 427 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 428 # Otherwise a system limit (for SysV at least) may be exceeded.
 429 .NOEXPORT: