binaries/src/clustalo/src/squid/Makefile.am

   1 # Replaces squids own automake files
   2 #
   3 # Some useful automake documentation:
   4 # http://www.openismus.com/documents/linux/automake/automake.shtml
   5 # http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
   6
   7 #SUBDIRS =
   8 EXTRA_DIST = COPYRIGHT LICENSE 00README clustalo.README squid-1.9g.tar.gz
   9 #LDADD =
  10
  11 # need DCLUSTALO here to enable Clustal specific squid patches
  12 # CLUSTALO is also defined in ../config.h which is included by squid.h
  13 # but some files do not include squid.h
  14 # not using -DSRE_STRICT_ANSI allows to use gzipped files as input and lists user *and* system time during timings
  15 # not sure if there are any downsides
  16 # AM_CFLAGS = -DCLUSTALO -DSRE_STRICT_ANSI @AM_CFLAGS@
  17 AM_CFLAGS = -DCLUSTALO @AM_CFLAGS@
  18
  19 noinst_LTLIBRARIES = libsquid.la
  20
  21 libsquid_la_SOURCES =  a2m.c aligneval.c alignio.c \
  22         clustal.c cluster.c \
  23         dayhoff.c \
  24         eps.c \
  25         file.c \
  26         getopt.c gki.c gki.h gsi.c gsi.h gsi64.c gsi64.h \
  27         hsregex.c \
  28         iupac.c \
  29         msa.c msa.h msf.c \
  30         phylip.c \
  31         revcomp.c rk.c rk.h \
  32         selex.c seqencode.c shuffle.c sqerror.c sqfuncs.h sqio.c squid.h squidcore.c \
  33         sre_ctype.c sre_math.c sre_random.c sre_random.h sre_string.c \
  34         ssi.c ssi.h stack.c stockholm.c stockholm.h stopwatch.c stopwatch.h \
  35         translate.c types.c vectorops.c \
  36         vectorops.h version.h \
  37         weight.c
  38
  39 library_includedir=$(includedir)/clustalo/squid
  40
  41 library_include_HEADERS = gki.h gsi64.h msa.h rk.h \
  42         squid.h stopwatch.h sqfuncs.h \
  43         sre_random.h ssi.h stockholm.h \
  44         vectorops.h version.h
  45
  46