binaries/src/compilebin.sh

   1 #!/bin/bash
   2
   3 echo ""
   4 echo "Compiling Clustalw..."
   5 cd clustalw
   6 chmod +x ./configure
   7 ./configure
   8 make clean
   9 make
  10 chmod +x src/clustalw2
  11 cd ..
  12
  13 echo "Compiling Clustal Omega..."
  14 cd clustalo
  15 make clean
  16 chmod +x ./configure
  17 ./configure
  18 make
  19 cd ..
  20
  21 echo "Compiling Mafft..."
  22 cd mafft/core
  23 make clean
  24 make
  25 cd ../..
  26
  27 echo "Compiling Mafft dependency fasta34..."
  28 cd fasta34
  29 rm *.o
  30 make
  31 chmod +x fasta34
  32 cd ..
  33
  34
  35 echo "Compiling Muscle..."
  36 cd muscle
  37 rm -f *.o muscle
  38 make
  39 cd ..
  40
  41 echo "Compiling Probcons..."
  42 cd probcons
  43 make clean
  44 make
  45 chmod +x probcons
  46 cd ..
  47
  48 echo "Compiling T-Coffee..."
  49 cd tcoffee
  50 chmod +x install
  51 ./install clean
  52 ./install t_coffee -force
  53 chmod +x t_coffee_source/t_coffee
  54 cd ..
  55
  56 echo "Compiling DisEMBL..."
  57 cd disembl
  58 gcc -O3 disembl.c -o disembl
  59 echo "DONE"
  60 chmod +x disembl DisEMBL.py
  61
  62 echo "Compiling DisEMBL dependancy Tisean... "
  63 cd Tisean_3.0.1
  64 chmod +x ./configure
  65 ./configure
  66 make
  67 cp source_c/sav_gol ../
  68 cd ..
  69 echo "DONE"
  70 chmod +x sav_gol
  71 cd ..
  72
  73 echo "Setting up GlobPlot ..."
  74 cp disembl/sav_gol globplot/sav_gol
  75 cd globplot
  76 chmod +x GlobPlot.py
  77 echo "DONE"
  78 cd ..
  79
  80 echo "Compiling IUPred..."
  81 cd iupred
  82 make clean
  83 make
  84 echo "DONE"
  85 cd ..
  86