binaries/src/tcoffee/example/combined_aln.aln.aln

   1 CLUSTAL FORMAT for T-COFFEE Version_4.39 [http://www.tcoffee.org], CPU=5.48 sec, SCORE=92, Nseq=19, Len=328
   2
   3 sp|O35205|GRAK_MOUSE   M--RFSS--WALVSLVAGVYMSSEC---------------------FHTEIIGGREVQPH
   4 sp|Q7YRZ7|GRAA_BOVIN   M-NIPFPFSFPPAICLLLIPGVFPV---------------------SCEGIIGGNEVAPH
   5 sp|P08884|GRAE_MOUSE   --------MPPVLILLTLLLPLGAG----------------------AEEIIGGHVVKPH
   6 sp|Q06606|GRZ2_RAT     --------MFLFLFFLVAILPVNTE----------------------GGEIIWGTESKPH
   7 sp|P21844|MCPT5_MOUSE  -------MHLLTLHLLLLLLGSSTK----------------------AGEIIGGTECIPH
   8 sp|P03953|CFAD_MOUSE   M--HSSV---YFVALVILGAAVCAAQ--------------------PRGRILGGQEAAAH
   9 sp|P00773|ELA1_RAT     -------MLRFLVFASLVLYGHSTQD-----------------FPETNARVVGGAEARRN
  10 sp|Q00871|CTRB1_PENVA  M----IGKLSLLLVCVAVASGNPAAGKPWHWKSPKPLVDPRI-HVNATPRIVGGVEATPH
  11 sp|P08246|ELNE_HUMAN   M-TLGRRLACLFLACVLPALLLGGTALA--------------------SEIVGGRRARPH
  12 sp|P20160|CAP7_HUMAN   M----TRLTVLALLAGLLASSRAGSSPL--------------------LDIVGGRKARPR
  13 sp|P80015|CAP7_PIG     --------------------------------------------------IVGGRRAQPQ
  14 sp|Q03238|GRAM_RAT     -------LL-----LLLALKTLW-----------------AV-GNRFEAQIIGGREAVPH
  15 sp|P00757|KLKB4_MOUSE  --------MWFLILFLALSLGGIDAA----------------------PPVQSQVDCE-N
  16 sp|Q6H321|KLK2_HORSE   --------MWFLVLCLDLSLGETGAL------------------PPIQSRIIGGWECEKH
  17 sp|Q91VE3|KLK7_MOUSE   M------GVWLLS-LITVLLSLALET------------------AGQGERIIDGYKCKEG
  18 sp|Q9Y5K2|KLK4_HUMAN   MATAGNPWGWFLG-YLILGVAGSLVS-------------------GSCSQIINGEDCSPH
  19 sp|P29786|TRY3_AEDAE   M-----NQFLFVSFCALLDSAKVSAATL------------------SSGRIVGGFQIDIA
  20 sp|P35037|TRY3_ANOGA   M-ISNKIAILLAVLVVAVACAQARVAQQHRSVQALPRFLPRP-KYDVGHRIVGGFEIDVS
  21 sp|P07338|CTRB1_RAT    ------MAFLWLVSCFALVGATFGCGVP--------TI---QPVLTGLSRIVNGEDAIPG
  22                                                                          :
  23
  24 sp|O35205|GRAK_MOUSE   SRPFMASIQYR----SKHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKN-E
  25 sp|Q7YRZ7|GRAA_BOVIN   TRRYMALIK------GLKLCAGALIKENWVLTAAHCDL----KGNPQVILGAHSTSHK-E
  26 sp|P08884|GRAE_MOUSE   SRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCR-----NRTMTVTLGAHNIKAK-E
  27 sp|Q06606|GRZ2_RAT     SRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCN-----GRNIKVTLGAHNIK-K-Q
  28 sp|P21844|MCPT5_MOUSE  SRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCA-----GRSITVLLGAHNKTSK-E
  29 sp|P03953|CFAD_MOUSE   ARPYMASVQVN----GTHVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSLSAP-E
  30 sp|P00773|ELA1_RAT     SWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCVS---SQMTFRVVVGDHNLSQN-D
  31 sp|Q00871|CTRB1_PENVA  SWPHQAALFIDD----MYFCGGSLISSEWVLTAAHCMD---GAGFVEVVLGAHNIRQN-E
  32 sp|P08246|ELNE_HUMAN   AWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNLSRR-E
  33 sp|P20160|CAP7_HUMAN   QFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYDLRRR-E
  34 sp|P80015|CAP7_PIG     EFPFLASIQKQG----RPFCAGALVHPRFVLTAASCFRGK-NSGSASVVLGAYDLRQQ-E
  35 sp|Q03238|GRAM_RAT     SRPYMVSLQNTK----SHMCGGVLVHQKWVLTAAHCLSE--PLQQLKLVFGLHSLHDP-Q
  36 sp|P00757|KLKB4_MOUSE  SQPWHVAVYRF----NKYQCGGVLLDRNWVLTAAHCY-----NDKYQVWLGKNNFLED-E
  37 sp|Q6H321|KLK2_HORSE   SKPWQVAVYHQ----GHFQCGGVLVHPQWVLTAAHCM-----SDDYQIWLGRHNLSED-E
  38 sp|Q91VE3|KLK7_MOUSE   SHPWQVALLKG----NQLHCGGVLVDKYWVLTAAHCK-----MGQYQVQLGSDKIG---D
  39 sp|Q9Y5K2|KLK4_HUMAN   SQPWQAALVME----NELFCSGVLVHPQWVLSAAHCF-----QNSYTIGLGLHSLEADQE
  40 sp|P29786|TRY3_AEDAE   EVPHQVSLQRSG----RHFCGGSIISPRWVLTRAHCTTNT-DPAAYTIRAGSTDRT----
  41 sp|P35037|TRY3_ANOGA   ETPYQVSLQYFN----SHRCGGSVLNSKWILTAAHCTVNL-QPSSLAVRLGSSRHA----
  42 sp|P07338|CTRB1_RAT    SWPWQVSLQDKT---GFHFCGGSLISEDWVVTAAHCGV----KTSDVVVAGEFDQGSD-E
  43                               :           *.. ::    ::: * *           :  *
  44
  45 sp|O35205|GRAK_MOUSE   P-MKQTFEIKKFIPFSRLQSGSA-----------SHDIMLIKLRTAAELNKNVQLLHLGS
  46 sp|Q7YRZ7|GRAA_BOVIN   K-LDQVFSIKKAIPYPCFDPQTF-----------EGDLQLLQLEGKATMTKAVGILQLPR
  47 sp|P08884|GRAE_MOUSE   E-TQQIIPVAKAIPHPDYNATAF-----------FSDIMLLKLESKAKRTKAVRPLKLPR
  48 sp|Q06606|GRZ2_RAT     E-NTQVISVVKAKPHENYDRDSH-----------FNDIMLLKLERKAQLNGVVKTIALPR
  49 sp|P21844|MCPT5_MOUSE  D-TWQKLEVEKQFLHPKYDENLV-----------VHDIMLLKLKEKAKLTLGVGTLPLSA
  50 sp|P03953|CFAD_MOUSE   P-YKRWYDVQSVVPHPGSRPDSL-----------EDDLILFKLSQNASLGPHVRPLPLQY
  51 sp|P00773|ELA1_RAT     G-TEQYVSVQKIMVHPTWNSNNVAA---------GYDIALLRLAQSVTLNNYVQLAVLPQ
  52 sp|Q00871|CTRB1_PENVA  A-SQVSITSTDFFTHENWNSWLL-----------TNDIALIRLPSPVSLNSNIKTVKLPS
  53 sp|P08246|ELNE_HUMAN   -PTRQVFAVQR-IFENGYDPVNL-----------LNDIVILQLNGSATINANVQVAQLPA
  54 sp|P20160|CAP7_HUMAN   RQSRQTFSISS-MSENGYDPQQN-----------LNDLMLLQLDREANLTSSVTILPLPL
  55 sp|P80015|CAP7_PIG     -QSRQTFSIRS-ISQNGYDPRQN-----------LNDVLLLQLDREARLTPSVALVPLPP
  56 sp|Q03238|GRAM_RAT     D-PGLTFYIKQAIKHPGYNLKY------------ENDLALLKLDGRVKPSKNVKPLALPR
  57 sp|P00757|KLKB4_MOUSE  P-SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPT
  58 sp|Q6H321|KLK2_HORSE   D-TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPT
  59 sp|Q91VE3|KLK7_MOUSE   Q-SAQKIKATKSFRHPGYSTKTH-----------VNDIMLVRLDEPVKMSSKVEAVQLPE
  60 sp|Q9Y5K2|KLK4_HUMAN   P-GSQMVEASLSVRHPEYNRPLL-----------ANDLMLIKLDESVSESDTIRSISIAS
  61 sp|P29786|TRY3_AEDAE   N-GGIIVKVKSVIPHPQYNGDTY-----------NYDFSLLELDESIGFSRSIEAIALPD
  62 sp|P35037|TRY3_ANOGA   S-GGTVVRVARVLEHPNYDDSTI-----------DYDFSLMELESELTFSDVVQPVSLPD
  63 sp|P07338|CTRB1_RAT    E-NIQVLKIAQVFKNPKFNMFTV-----------RNDITLLKLATPAQFSETVSAVCLPN
  64                                                            *. :..*         :    :
  65
  66 sp|O35205|GRAK_MOUSE   KN--YLRDGTKCQVTGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDM
  67 sp|Q7YRZ7|GRAA_BOVIN   TED-DVKPHTKCHVAGWGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVIDLSM
  68 sp|P08884|GRAE_MOUSE   PNA-RVKPGDVCSVAGWGSRSINDTKASARLREAQLVIQEDEECKKR----FRHYTETTE
  69 sp|Q06606|GRZ2_RAT     SQD-WVKPGQVCTVAGWGRLAN--CTSSNTLQEVNLEVQKGQKCQDM----SEDYNDSIQ
  70 sp|P21844|MCPT5_MOUSE  NFN-FIPPGRMCRAVGWGRTNVNE-PASDTLQEVKMRLQEPQACKH-----FTSFRHNSQ
  71 sp|P03953|CFAD_MOUSE   EDK-EVEPGTLCDVAGWGVVTHAG-RRPDVLHQLRVSIMNRTTCNLRTY--HDGVVTINM
  72 sp|P00773|ELA1_RAT     EGT-ILANNNPCYITGWGRTRTNG-QLSQTLQQAYLPSVDYSICSSSSY--WGSTVKTTM
  73 sp|Q00871|CTRB1_PENVA  SDV---SVGTTVTPTGWGRPSDSASGISDVLRQVNVPVMTNADCDSV----YG-IVGDGV
  74 sp|P08246|ELNE_HUMAN   QGR-RLGNGVQCLAMGWGLLGRNR-GIASVLQELNVTVVT-SLCRRS------------N
  75 sp|P20160|CAP7_HUMAN   QNA-TVEAGTRCQVAGWGSQRSGG-RLSRFPRFVNVTVTPEDQCRPN------------N
  76 sp|P80015|CAP7_PIG     QNA-TVEAGTNCQVAGWGTQRLRR-LFSRFPRVLNVTVTS-NPCLPR------------D
  77 sp|Q03238|GRAM_RAT     KPRDKPAEGSRCSTAGWGITHQRG-QLAKSLQELDLRLLDTRMCNNSRF--WNGVLTDSM
  78 sp|P00757|KLKB4_MOUSE  EEP---KLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKA----HEMKVTDAM
  79 sp|Q6H321|KLK2_HORSE   QEP---KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARA----YPEKMTEFV
  80 sp|Q91VE3|KLK7_MOUSE   HCE---PPGTSCTVSGWGTTTSPDVTFPSDLMCSDVKLISSRECKKV----YKDLLGKTM
  81 sp|Q9Y5K2|KLK4_HUMAN   QCP---TAGNSCLVSGWGLLANG--RMPTVLQCVNVSVVSEEVCSKL----YDPLYHPSM
  82 sp|P29786|TRY3_AEDAE   ASE-TVADGAMCTVSGWGDTKNVF-EMNTLLRAVNVPSYNQAECAAALV--NVVPVTEQM
  83 sp|P35037|TRY3_ANOGA   QDE-AVEDGTMTIVSGWGNTQSAA-ESNAILRAANVPTVNQKECTIAYS--SSGGITDRM
  84 sp|P07338|CTRB1_RAT    VDD-DFPPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKS----WGSKITDVM
  85                                       ***                 :       *
  86
  87 sp|O35205|GRAK_MOUSE   ICAGDARGQKDSCKGDSGGPLICKG----IFHALVSQGY-KCGI-AKKPGIYTLLTKKYQ
  88 sp|Q7YRZ7|GRAA_BOVIN   ICAGGRKGEDDSCEGDSGSPLICDN----VFRGVTSFG--KCGN-PQKPGIYILLTKKHL
  89 sp|P08884|GRAE_MOUSE   ICAGDLKKIKTPFKGDSGGPLVCDN----KAYGLLAYAK-N--R-TISSGVFTKIVH-FL
  90 sp|Q06606|GRZ2_RAT     LCVGNPSEGKATGKGDSGGPFVCDG----VAQGIVSYRL-C--T-GTLPRVFTRISS-FI
  91 sp|P21844|MCPT5_MOUSE  LCVGNPKKMQNVYKGDSGGPLLCAG----IAQGIASYVH-R--N-AKPPAVFTRISH-YR
  92 sp|P03953|CFAD_MOUSE   MCAE--SNRRDTCRGDSGSPLVCGD----AVEGVVTWGSRVCGN-GKKPGVYTRVSS-YR
  93 sp|P00773|ELA1_RAT     VCAGG-DGVRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFTRVSA-YI
  94 sp|Q00871|CTRB1_PENVA  VCIDG-TGGKSTCNGDSGGPLNLNG----MTYGITSFGSSAGCEKG-YPAAFTRVYY-YL
  95 sp|P08246|ELNE_HUMAN   VCTLVRGRQAGVCFGDSGSPLVCNG----LIHGIASFVRGGCAS-GLYPDAFAPVAQ-FV
  96 sp|P20160|CAP7_HUMAN   VCTGVLTRRGGICNGDGGTPLVCEG----LAHGVASFSLGPCGR---GPDFFTRVAL-FR
  97 sp|P80015|CAP7_PIG     MCIGVFSRRGRISQGDRGTPLVCNG----LAQGVASFLRRRFRR---SSGFFTRVAL-FR
  98 sp|Q03238|GRAM_RAT     LCLKAGAKGQAPCKGDSGGPLVCGK-G--KVDGILSFSSKNCTD-IFKPTVATAVAP-YS
  99 sp|P00757|KLKB4_MOUSE  LCAGEMDGGSYTCEHDSGGPLICDG----ILQGITSWGPEPCGE-PTEPSVYTKLIK-FS
 100 sp|Q6H321|KLK2_HORSE   LCATHRDDSGSICLGDSGGALICDG----VFQGITSWGYSECAD-FNDNFVFTKVMP-HL
 101 sp|Q91VE3|KLK7_MOUSE   LCAGIPDSKTNTCNGDSGGPLVCND----TLQGLVSWGTYPCGQ-PNDPGVYTQVCK-YK
 102 sp|Q9Y5K2|KLK4_HUMAN   FCAGGGQDQKDSCNGDSGGPLICNG----YLQGLVSFGKAPCGQ-VGVPGVYTNLCK-FT
 103 sp|P29786|TRY3_AEDAE   ICAGYAAGGKDSCQGDSGGPLVSGD----KLVGVVSWGK-GCAL-PNLPGVYARVST-VR
 104 sp|P35037|TRY3_ANOGA   LCAGYKRGGKDACQGDSGGPLVVDG----KLVGVVSWGF-GCAM-PGYPGVYARVAV-VR
 105 sp|P07338|CTRB1_RAT    TCAG--ASGVSSCMGDSGGPLVCQKDGVWTLAGIVSWGSGVCS-T-STPAVYSRVTA-LM
 106                         *             * * .:           .: :                  :
 107
 108 sp|O35205|GRAK_MOUSE   TWIKSKLAPSRAH---------------
 109 sp|Q7YRZ7|GRAA_BOVIN   NWIKKTIAGAI-----------------
 110 sp|P08884|GRAE_MOUSE   PWISRNMKLL------------------
 111 sp|Q06606|GRZ2_RAT     PWIQKTMKVLQQS---------------
 112 sp|P21844|MCPT5_MOUSE  PWINKILREN------------------
 113 sp|P03953|CFAD_MOUSE   MWIENITNGNMTS---------------
 114 sp|P00773|ELA1_RAT     SWMNNVIAYT------------------
 115 sp|Q00871|CTRB1_PENVA  DWIQQKTGVTP-----------------
 116 sp|P08246|ELNE_HUMAN   NWIDSIIQRSEDNPCPHPRDPDPASRTH
 117 sp|P20160|CAP7_HUMAN   DWIDGVLNNPGPG----PA---------
 118 sp|P80015|CAP7_PIG     NWIDSVLNNPP-----------------
 119 sp|Q03238|GRAM_RAT     SWIRKVIGRWSPQPLT------------
 120 sp|P00757|KLKB4_MOUSE  SWIRETMANNP-----------------
 121 sp|Q6H321|KLK2_HORSE   KWIKETIEKNS-----------------
 122 sp|Q91VE3|KLK7_MOUSE   RWVMETMKTHR-----------------
 123 sp|Q9Y5K2|KLK4_HUMAN   EWIEKTVQAS------------------
 124 sp|P29786|TRY3_AEDAE   QWIREVSEV-------------------
 125 sp|P35037|TRY3_ANOGA   DWVRENSGA-------------------
 126 sp|P07338|CTRB1_RAT    PWVQQILEAN------------------
 127                         *:
 128
 129
 130