binaries/src/tcoffee/example/sample_rnaseq2.alifold

   1 ________________GAGGUGCUCUGAGACCCGAAACUAGACUCGACUUUAACAGACACAGACGACCCUGAA_____G_______________________AUGGAAA_GUUUUCUUCCAAAUUGUGC_____UGCACGUUUU_____UGGCGAG_AGCAUGGGGCUGUGCGGCGUCCC___CUCCCUGGCGC_____CCACCUGUGCCCUGCACACU_G_GCCUGCACUGUGGUGAU_____CUC_GCUUGGCCC____CCACCUGA_______UUCC____UGACA____UACAGCAGA__GGAAC____C__UUAGGCUCAGGUGG__AACA_____GCCUCAACU___GAUUC_GUCCCUGAACUUCCGUACA__CAGCCCUGGAGUCGUCU____UAGA_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________C__________________G__C____UGC________GC___G_UG__C_CC_________________C_GC__C_U_CUC_C_CCA_AA_C_UG__GCA___U___GG_A__________CCA_C___________________________________
   2 ................(((.......................))).......((((.....((((((.....................................((((....)))).((((...(((((......)))))...........((.....))...(((((((((((((((...........))))).....)((((.((((...((........))..))))...))))............................................................)))....(((((.......(((((..(.(((.............)))((.......))....)..))))).))))).......))))))))))))))))................((((((((........((((...........))))............((((((((((((...............))).)).....)))))))..)))))))).....))))...........................((((((((((((((((.....)))))))))...))))))).....(((((.(((((((((((..((.........((((((.((((.(....((.........((.((.(((((........)))).).)).)).........))....))))).)))))).........))....)))))))))))......)))))................................................. (-51.57 = -64.10 +  12.53)