binaries/src/tcoffee/example/sproteases_large.dnd

   1 (
   2 (
   3 (
   4 (
   5 (
   6 sp_vs|O60259-2|O60259:0.00253,
   7 sp|O60259|NRPN_HUMAN:0.00747)
   8 :0.17226,
   9 (
  10 sp|O88780|NRPN_RAT:0.04678,
  11 sp|Q61955|NRPN_MOUSE:0.04322)
  12 :0.12524)
  13 :0.10559,
  14 sp|Q92876|KLK6_HUMAN:0.27066)
  15 :0.02121,
  16 (
  17 (
  18 (
  19 (
  20 (
  21 (
  22 (
  23 (
  24 sp_vs|P03953-2|P03953:0.00491,
  25 sp|P03953|CFAD_MOUSE:0.00509)
  26 :0.09336,
  27 sp|P32038|CFAD_RAT:0.06164)
  28 :0.10550,
  29 (
  30 sp|P00746|CFAD_HUMAN:0.10690,
  31 sp|P51779|CFAD_PIG:0.09310)
  32 :0.05450)
  33 :0.14163,
  34 sp|P35034|TRYP_PLEPL:0.32837)
  35 :0.02259,
  36 (
  37 (
  38 (
  39 (
  40 (
  41 sp_vs|P11032-2|P11032:0.02257,
  42 sp|P11032|GRAA_MOUSE:0.01743)
  43 :0.13000,
  44 sp|P12544|GRAA_HUMAN:0.16000)
  45 :0.03496,
  46 sp|Q7YRZ7|GRAA_BOVIN:0.23254)
  47 :0.13653,
  48 (
  49 (
  50 (
  51 (
  52 (
  53 (
  54 (
  55 sp|O35164|MCPT9_MOUSE:0.02189,
  56 sp|Q00356|MCPTX_MOUSE:0.01811)
  57 :0.13363,
  58 (
  59 (
  60 sp|P00770|MCPT2_RAT:0.11857,
  61 sp|P11034|MCPT1_MOUSE:0.12143)
  62 :0.01263,
  63 (
  64 (
  65 sp|P09650|MCPT1_RAT:0.06627,
  66 sp|P21812|MCPT4_MOUSE:0.05373)
  67 :0.03620,
  68 sp|P50340|MCPT1_MERUN:0.10380)
  69 :0.03862)
  70 :0.02824)
  71 :0.02016,
  72 sp|P97592|MCPT4_RAT:0.15046)
  73 :0.02732,
  74 sp|P15119|MCPT2_MOUSE:0.22143)
  75 :0.03242,
  76 (
  77 (
  78 (
  79 sp|P21842|MCPT1_CANFA:0.08432,
  80 (
  81 sp|P23946|MCPT1_HUMAN:0.02027,
  82 (
  83 sp|P52195|MCPT1_PAPHA:-0.00236,
  84 sp|P56435|MCPT1_MACFA:0.02236)
  85 :0.01973)
  86 :0.07068)
  87 :0.01483,
  88 sp|P79204|MCPT2_SHEEP:0.10517)
  89 :0.03315,
  90 (
  91 (
  92 sp|P21844|MCPT5_MOUSE:0.03101,
  93 sp|P50339|MCPT3_RAT:0.02899)
  94 :0.04784,
  95 sp|P50341|MCPT2_MERUN:0.08216)
  96 :0.07310)
  97 :0.09768)
  98 :0.02072,
  99 (
 100 (
 101 (
 102 (
 103 (
 104 (
 105 sp|O46683|MCPT3_SHEEP:0.07434,
 106 sp|P80931|MCT1A_SHEEP:0.07566)
 107 :0.03447,
 108 sp|P80219|DDN1_BOVIN:0.11053)
 109 :0.08724,
 110 (
 111 sp|P10144|GRAB_HUMAN:0.14424,
 112 sp|P20718|GRAH_HUMAN:0.12576)
 113 :0.09276)
 114 :0.00926,
 115 (
 116 sp|P08311|CATG_HUMAN:0.19333,
 117 sp|P28293|CATG_MOUSE:0.18667)
 118 :0.02574)
 119 :0.02054,
 120 (
 121 (
 122 sp|P04187|GRAB_MOUSE:0.11835,
 123 (
 124 sp|P18291|NKP1_RAT:0.08979,
 125 sp|Q06605|GRZ1_RAT:0.09021)
 126 :0.02665)
 127 :0.08113,
 128 (
 129 sp|P08882|GRAC_MOUSE:0.18800,
 130 (
 131 (
 132 sp|P08883|GRAF_MOUSE:0.09729,
 133 sp|P13366|GRAG_MOUSE:0.08271)
 134 :0.02029,
 135 (
 136 sp|P08884|GRAE_MOUSE:0.06034,
 137 sp|P11033|GRAD_MOUSE:0.05966)
 138 :0.04971)
 139 :0.07450)
 140 :0.02231)
 141 :0.03020)
 142 :0.01688,
 143 (
 144 sp|P43430|MCPT8_MOUSE:0.10272,
 145 (
 146 sp|P97594|MCPT8_RAT:0.05326,
 147 sp|Q06606|GRZ2_RAT:0.05674)
 148 :0.07228)
 149 :0.16150)
 150 :0.01794)
 151 :0.05147,
 152 (
 153 (
 154 (
 155 sp|P08246|ELNE_HUMAN:0.15818,
 156 sp|Q3UP87|ELNE_MOUSE:0.15182)
 157 :0.11976,
 158 (
 159 sp|P24158|PRTN3_HUMAN:0.16884,
 160 sp|Q61096|PRTN3_MOUSE:0.16116)
 161 :0.05524)
 162 :0.04486,
 163 (
 164 sp|P20160|CAP7_HUMAN:0.17028,
 165 sp|P80015|CAP7_PIG:0.17972)
 166 :0.17264)
 167 :0.05065)
 168 :0.01021)
 169 :0.00572,
 170 (
 171 (
 172 sp|O35205|GRAK_MOUSE:0.06471,
 173 sp|P49864|GRAK_RAT:0.06529)
 174 :0.07058,
 175 sp|P49863|GRAK_HUMAN:0.13942)
 176 :0.16108)
 177 :0.01030)
 178 :0.00788,
 179 (
 180 sp|P51124|GRAM_HUMAN:0.16839,
 181 sp|Q03238|GRAM_RAT:0.17161)
 182 :0.15620)
 183 :0.02457,
 184 (
 185 (
 186 (
 187 (
 188 (
 189 (
 190 (
 191 sp|O19023|ELA3B_MACMU:0.05956,
 192 sp|P08861|ELA3B_HUMAN:0.03044)
 193 :0.01716,
 194 sp|P09093|ELA3A_HUMAN:0.04284)
 195 :0.21750,
 196 (
 197 (
 198 sp|P00774|ELA2A_RAT:0.08686,
 199 sp|P05208|ELA2A_MOUSE:0.08314)
 200 :0.04491,
 201 (
 202 sp|P08217|ELA2A_HUMAN:0.09986,
 203 (
 204 sp|P08419|ELA2A_PIG:0.08083,
 205 sp|Q29461|ELA2A_BOVIN:0.08917)
 206 :0.02014)
 207 :0.03384)
 208 :0.10687)
 209 :0.01247,
 210 (
 211 (
 212 (
 213 (
 214 sp|O46644|ELA1_MACFA:0.03321,
 215 sp|Q9UNI1|ELA1_HUMAN:0.04679)
 216 :0.02991,
 217 sp|P00773|ELA1_RAT:0.06509)
 218 :0.00282,
 219 sp|Q28153|ELA1_BOVIN:0.06468)
 220 :0.01902,
 221 sp|P00772|ELA1_PIG:0.06973)
 222 :0.18940)
 223 :0.06197,
 224 (
 225 sp|P00771|COGS_UCAPU:0.18032,
 226 (
 227 sp|P36178|CTRB2_PENVA:0.03802,
 228 sp|Q00871|CTRB1_PENVA:0.04198)
 229 :0.11968)
 230 :0.17928)
 231 :0.01783,
 232 (
 233 (
 234 (
 235 sp|P00766|CTRA_BOVIN:0.12930,
 236 (
 237 sp|P00767|CTRB_BOVIN:0.09893,
 238 (
 239 (
 240 sp|P04813|CTR2_CANFA:0.06921,
 241 sp|P17538|CTRB1_HUMAN:0.06079)
 242 :0.01349,
 243 sp|P07338|CTRB1_RAT:0.09651)
 244 :0.01107)
 245 :0.02820)
 246 :0.10149,
 247 sp|P47796|CTRA_GADMO:0.20164)
 248 :0.04094,
 249 sp|P40313|CTRL_HUMAN:0.23437)
 250 :0.07989)
 251 :0.02175,
 252 (
 253 (
 254 (
 255 sp|P06868|PLMN_BOVIN:0.07185,
 256 (
 257 sp|P20918|PLMN_MOUSE:0.08937,
 258 (
 259 sp|P80009|PLMN_CANFA:0.09034,
 260 sp|P81286|PLMN_SHEEP:0.08966)
 261 :0.01563)
 262 :0.04065)
 263 :0.20109,
 264 (
 265 sp|P20231|TRYB2_HUMAN:0.00000,
 266 sp|Q15661|TRYB1_HUMAN:0.01005)
 267 :0.28391)
 268 :0.01569,
 269 (
 270 sp|P29786|TRY3_AEDAE:0.29287,
 271 (
 272 (
 273 (
 274 sp|P35035|TRY1_ANOGA:0.12523,
 275 sp|P35037|TRY3_ANOGA:0.10477)
 276 :0.01626,
 277 sp|P35036|TRY2_ANOGA:0.13874)
 278 :0.01099,
 279 sp|P35041|TRY7_ANOGA:0.14651)
 280 :0.12463)
 281 :0.04966)
 282 :0.00800)
 283 :0.01593)
 284 :0.01813,
 285 (
 286 (
 287 (
 288 (
 289 (
 290 sp|P00752|KLK_PIG:0.19305,
 291 (
 292 (
 293 sp|P06870|KLK1_HUMAN:0.05076,
 294 (
 295 sp|Q07276|KLK1_MACFA:0.02083,
 296 sp|Q28773|KLK1_PAPHA:0.01917)
 297 :0.03924)
 298 :0.10865,
 299 sp|Q6H321|KLK2_HORSE:0.19385)
 300 :0.02445)
 301 :0.03772,
 302 (
 303 (
 304 sp|P07288|KLK3_HUMAN:0.06069,
 305 (
 306 sp|P33619|KLK3_MACMU:0.00975,
 307 sp|Q6DT45|KLK3_MACFA:0.01025)
 308 :0.05431)
 309 :0.07639,
 310 sp|P20151|KLK2_HUMAN:0.13611)
 311 :0.06228)
 312 :0.01739,
 313 sp|P12323|KLK2_CAVPO:0.23949)
 314 :0.01575,
 315 (
 316 (
 317 (
 318 (
 319 (
 320 sp|P00755|KLK1_MOUSE:0.06162,
 321 sp|P15949|KLKB9_MOUSE:0.05838)
 322 :0.03172,
 323 sp|P00756|KLK3_MOUSE:0.09828)
 324 :0.00778,
 325 (
 326 sp|P00757|KLKB4_MOUSE:0.09742,
 327 (
 328 sp|P15945|KLK5_MOUSE:0.04157,
 329 sp|P15947|KLK6_MOUSE:0.02843)
 330 :0.04258)
 331 :0.03347)
 332 :0.01539,
 333 (
 334 (
 335 sp|P07628|KLKB8_MOUSE:0.06335,
 336 (
 337 sp|P36368|KLK13_MOUSE:0.02701,
 338 sp|P36369|KLK26_MOUSE:0.02299)
 339 :0.04665)
 340 :0.06211,
 341 (
 342 (
 343 sp|P15946|KLKBB_MOUSE:0.08049,
 344 (
 345 (
 346 sp|Q61754|KLK24_MOUSE:0.05465,
 347 sp|Q61759|KLKBL_MOUSE:0.05535)
 348 :0.01238,
 349 sp|Q9JM71|KLKBR_MOUSE:0.06262)
 350 :0.03701)
 351 :0.01148,
 352 sp|P15948|KLK22_MOUSE:0.10477)
 353 :0.00398)
 354 :0.01386)
 355 :0.04985,
 356 (
 357 (
 358 sp|P00758|KLK1_RAT:0.10915,
 359 (
 360 (
 361 (
 362 sp|P36373|KLK7_RAT:0.07808,
 363 sp|P36375|KLK10_RAT:0.07192)
 364 :0.00751,
 365 sp|P36376|KLK12_RAT:0.08749)
 366 :0.02318,
 367 sp|P36374|KLK8_RAT:0.09932)
 368 :0.01335)
 369 :0.01764,
 370 (
 371 sp|P00759|KLK2_RAT:0.08697,
 372 sp|P07647|KLK9_RAT:0.09303)
 373 :0.05799)
 374 :0.03897)
 375 :0.06933)
 376 :0.00784,
 377 sp|P09582|ESTA_CANFA:0.26279)
 378 :0.06948)
 379 :0.01062)
 380 :0.00506,
 381 (
 382 (
 383 (
 384 (
 385 (
 386 (
 387 (
 388 (
 389 (
 390 (
 391 (
 392 (
 393 sp_vs|P35030-2|P35030:0.01643,
 394 sp_vs|P35030-3|P35030:0.01357)
 395 :0.01510,
 396 sp|P35030|TRY3_HUMAN:0.04990)
 397 :0.07705,
 398 (
 399 sp|P07477|TRY1_HUMAN:0.06767,
 400 sp|P07478|TRY2_HUMAN:0.06233)
 401 :0.04545)
 402 :0.04170,
 403 (
 404 (
 405 (
 406 sp|P00762|TRY1_RAT:0.06327,
 407 sp|P00763|TRY2_RAT:0.05673)
 408 :0.01164,
 409 sp|P07146|TRY2_MOUSE:0.07836)
 410 :0.03708,
 411 (
 412 sp|P06872|TRY2_CANFA:0.09109,
 413 sp|Q29463|TRY2_BOVIN:0.09891)
 414 :0.01542)
 415 :0.01799)
 416 :0.01081,
 417 (
 418 sp|P00760|TRY1_BOVIN:0.13927,
 419 (
 420 (
 421 sp|P00761|TRYP_PIG:0.09446,
 422 sp|P08426|TRY3_RAT:0.08554)
 423 :0.02475,
 424 sp|P06871|TRY1_CANFA:0.12525)
 425 :0.01323)
 426 :0.02653)
 427 :0.01157,
 428 (
 429 (
 430 sp|Q90627|TRY1_CHICK:0.00466,
 431 sp|Q90628|TRY2_CHICK:0.01534)
 432 :0.13426,
 433 sp|Q90629|TRY3_CHICK:0.13574)
 434 :0.01609)
 435 :0.00694,
 436 (
 437 (
 438 sp|P19799|TRY1_XENLA:0.13359,
 439 sp|P70059|TRY2_XENLA:0.11641)
 440 :0.01944,
 441 sp|P35033|TRY3_SALSA:0.15056)
 442 :0.01747)
 443 :0.01709,
 444 (
 445 sp|P00764|TRYP_SQUAC:0.18128,
 446 (
 447 (
 448 sp|P16049|TRY1_GADMO:0.02657,
 449 sp|Q91041|TRYX_GADMO:0.01343)
 450 :0.09368,
 451 (
 452 sp|P35031|TRY1_SALSA:0.00625,
 453 sp|P35032|TRY2_SALSA:0.02375)
 454 :0.11132)
 455 :0.04872)
 456 :0.01644)
 457 :0.01022,
 458 (
 459 sp|P12788|TRY4_RAT:0.15508,
 460 (
 461 sp|P32821|TRYA_RAT:0.00500,
 462 sp|P32822|TRYB_RAT:0.00500)
 463 :0.16992)
 464 :0.04137)
 465 :0.12298,
 466 (
 467 (
 468 sp|Q7RTY8|TMPS7_HUMAN:0.04879,
 469 sp|Q8BIK6|TMPS7_MOUSE:0.04121)
 470 :0.27979,
 471 sp|Q9Y5K2|KLK4_HUMAN:0.27521)
 472 :0.04700)
 473 :0.00765,
 474 sp|Q9P0G3|KLK14_HUMAN:0.27292)
 475 :0.00455,
 476 (
 477 (
 478 sp_vs|Q9QYN3-2|Q9QYN3:0.01833,
 479 sp|Q9QYN3|KLK11_MOUSE:0.02167)
 480 :0.10034,
 481 (
 482 sp_vs|Q9UBX7-1|Q9UBX7:0.01982,
 483 sp|Q9UBX7|KLK11_HUMAN:0.03018)
 484 :0.09966)
 485 :0.15360)
 486 :0.01544,
 487 (
 488 (
 489 (
 490 (
 491 sp_vs|Q8K0D2-2|Q8K0D2:-0.02689,
 492 (
 493 sp|Q6L711|HABP2_RAT:0.02512,
 494 sp|Q8K0D2|HABP2_MOUSE:0.03488)
 495 :0.05689)
 496 :0.25890,
 497 sp|Q9UKR0|KLK12_HUMAN:0.25110)
 498 :0.05072,
 499 (
 500 sp|P49862|KLK7_HUMAN:0.12054,
 501 sp|Q91VE3|KLK7_MOUSE:0.11946)
 502 :0.17991)
 503 :0.00303,
 504 (
 505 (
 506 sp|Q7JIG6|KLK15_SAGOE:0.05039,
 507 sp|Q9H2R5|KLK15_HUMAN:0.04961)
 508 :0.21287,
 509 sp|Q9UKR3|KLK13_HUMAN:0.26713)
 510 :0.02275)
 511 :0.00178);