binaries/src/tcoffee/example/sproteases_small.expresso

   1 CLUSTAL FORMAT for T-COFFEE Version_4.26 [http://www.tcoffee.org], CPU=81.78 sec, SCORE=56, Nseq=19, Len=338
   2
   3 sp|O35205|GRAK_MOUSE   M-----RFSS--WALV----SLVAGVY----------------MSSECFHTEIIGGREVQ
   4 sp|Q7YRZ7|GRAA_BOVIN   M-N---IPFPFSFPPAICL-LLIPGVF-------------------PVSCEGIIGGNEVA
   5 sp|P08884|GRAE_MOUSE   M------------PPVLIL----LTLL----------------LPLGAGAEEIIGGHVVK
   6 sp|Q06606|GRZ2_RAT     M------------FLFLFF----LVAI----------------LPVNTEGGEIIWGTESK
   7 sp|P21844|MCPT5_MOUSE  M----------H-LLTLHL----LLLL----------------LGSSTKAGEIIGGTECI
   8 sp|P03953|CFAD_MOUSE   M-----HSSV--YFVA----LVILGAA----------------VCAAQPRGRILGGQEAA
   9 sp|P00773|ELA1_RAT     M------LRFLVFASL----VLYGHST----------------QDFPETNARVVGGAEAR
  10 sp|Q00871|CTRB1_PENVA  M---IGKLSLLLVCVA----VASGNPAAGKPWHWKSPKPLVDPRIHVNATPRIVGGVEAT
  11 sp|P08246|ELNE_HUMAN   M-TLGRRLACL--FLA----CVLPALL----------------LGGTALASEIVGGRRAR
  12 sp|P20160|CAP7_HUMAN   M----TRLTVL--ALL----AGLLASS----------------RAGSSPLLDIVGGRKAR
  13 sp|P80015|CAP7_PIG     ----------------------------------------------------IVGGRRAQ
  14 sp|Q03238|GRAM_RAT     L------------LLLLAL----KTLW----------------AVGNRFEAQIIGGREAV
  15 sp|P00757|KLKB4_MOUSE  M-----------WFLILFLALSLGGIDA----------------------APPVQSQVDC
  16 sp|Q6H321|KLK2_HORSE   M-----------WFLVLCLDLSLGETGA-----------------LPPIQSRIIGGWECE
  17 sp|Q91VE3|KLK7_MOUSE   M------GV---WLLSLITVLLSLALE------------------TAGQGERIIDGYKCK
  18 sp|Q9Y5K2|KLK4_HUMAN   MATAGNPWG---WFLG-YLILGVAGSL------------------VSGSCSQIINGEDCS
  19 sp|P29786|TRY3_AEDAE   M---NQ-FLFVSFCALLDSAKV-SAAT--------------------LSSGRIVGGFQID
  20 sp|P35037|TRY3_ANOGA   M--ISN-KIAIL-LAVLVVAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRIVGGFEID
  21 sp|P07338|CTRB1_RAT    M-----AFLWLVSCFA----LVGATFGCGVP----------TIQPVLTGLSRIVNGEDAI
  22                                                                             : .
  23
  24 sp|O35205|GRAK_MOUSE   PHSRPFMASIQYRSK----HICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKN
  25 sp|Q7YRZ7|GRAA_BOVIN   PHTRRYMALIK--GL----KLCAGALIKENWVLTAAHCDL----KGNPQVILGAHSTSHK
  26 sp|P08884|GRAE_MOUSE   PHSRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCRN-----RTMTVTLGAHNIKAK
  27 sp|Q06606|GRZ2_RAT     PHSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNG-----RNIKVTLGAHNIKKQ
  28 sp|P21844|MCPT5_MOUSE  PHSRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCAG-----RSITVLLGAHNKTSK
  29 sp|P03953|CFAD_MOUSE   AHARPYMASVQVNGT----HVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSLSAP
  30 sp|P00773|ELA1_RAT     RNSWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCVSSQ-M--TFRVVVGDHNLSQN
  31 sp|Q00871|CTRB1_PENVA  PHSWPHQAALFIDD----MYFCGGSLISSEWVLTAAHCMDGA-G--FVEVVLGAHNIRQN
  32 sp|P08246|ELNE_HUMAN   PHAWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNLSRR
  33 sp|P20160|CAP7_HUMAN   PRQFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYDLRRR
  34 sp|P80015|CAP7_PIG     PQEFPFLASIQKQG----RPFCAGALVHPRFVLTAASCFRGK-NSGSASVVLGAYDLRQQ
  35 sp|Q03238|GRAM_RAT     PHSRPYMVSLQNTK----SHMCGGVLVHQKWVLTAAHCLSEP--LQQLKLVFGLHSLHDP
  36 sp|P00757|KLKB4_MOUSE  ENSQPWHVAVYRFNK----YQCGGVLLDRNWVLTAAHCYN-----DKYQVWLGKNNFLED
  37 sp|Q6H321|KLK2_HORSE   KHSKPWQVAVYHQGH----FQCGGVLVHPQWVLTAAHCMS-----DDYQIWLGRHNLSED
  38 sp|Q91VE3|KLK7_MOUSE   EGSHPWQVALLKGNQ----LHCGGVLVDKYWVLTAAHCKM-----GQYQVQLGSDKIG--
  39 sp|Q9Y5K2|KLK4_HUMAN   PHSQPWQAALVMENE----LFCSGVLVHPQWVLSAAHCFQ-----NSYTIGLGLHSLEAD
  40 sp|P29786|TRY3_AEDAE   IAEVPHQVSLQRSG----RHFCGGSIISPRWVLTRAHCTTNT-DPAAYTIRAGS---TD-
  41 sp|P35037|TRY3_ANOGA   VSETPYQVSLQYFN----SHRCGGSVLNSKWILTAAHCTVNL-QPSSLAVRLGS---SR-
  42 sp|P07338|CTRB1_RAT    PGSWPWQVSLQDKT---GFHFCGGSLISEDWVVTAAHCGVK----TSDVVVAGEFDQGSD
  43                                 :           *.. ::    ::: * *           :  *
  44
  45 sp|O35205|GRAK_MOUSE   -E-PMKQTFEIKKFIPFSRLQ-----------SGSA--SHDIMLIKLRTAAELNKNVQLL
  46 sp|Q7YRZ7|GRAA_BOVIN   -E-KLDQVFSIKKAIPYPCFD-----------PQTF--EGDLQLLQLEGKATMTKAVGIL
  47 sp|P08884|GRAE_MOUSE   -E-ETQQIIPVAKAIPHPDYN-----------ATAF--FSDIMLLKLESKAKRTKAVRPL
  48 sp|Q06606|GRZ2_RAT     -E-NTQ-VISVVKAKPHENYD-----------RDSH--FNDIMLLKLERKAQLNGVVKTI
  49 sp|P21844|MCPT5_MOUSE  -E-DTWQKLEVEKQFLHPKYD-----------ENLV--VHDIMLLKLKEKAKLTLGVGTL
  50 sp|P03953|CFAD_MOUSE   -E-PYKRWYDVQSVVPHPGSR-----------PDSL--EDDLILFKLSQNASLGPHVRPL
  51 sp|P00773|ELA1_RAT     -D-GTEQYVSVQKIMVHPTWN-----------SNNVAAGYDIALLRLAQSVTLNNYVQLA
  52 sp|Q00871|CTRB1_PENVA  -E-ASQVSITSTDFFTHENWN-----------SWLL--TNDIALIRLPSPVSLNSNIKTV
  53 sp|P08246|ELNE_HUMAN   -E-PTRQVFAVQRIFEN-GYD-----------PVNL--LNDIVILQLNGSATINANVQVA
  54 sp|P20160|CAP7_HUMAN   -ERQSRQTFSISSMSEN-GYD-----------PQQN--LNDLMLLQLDREANLTSSVTIL
  55 sp|P80015|CAP7_PIG     -E-QSRQTFSIRSISQN-GYD-----------PRQN--LNDVLLLQLDREARLTPSVALV
  56 sp|Q03238|GRAM_RAT     -QD-PGLTFYIKQAIKHPGYN-----------L-KY--ENDLALLKLDGRVKPSKNVKPL
  57 sp|P00757|KLKB4_MOUSE  -E-PSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDY--SNDLMLLRLSKPADITDVVKPI
  58 sp|Q6H321|KLK2_HORSE   -E-DTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDI--SHDLMLLRLAQPARITDAVKIL
  59 sp|Q91VE3|KLK7_MOUSE   -D-QSAQKIKATKSFRHPGYS-----------TKTH--VNDIMLVRLDEPVKMSSKVEAV
  60 sp|Q9Y5K2|KLK4_HUMAN   QE-PGSQMVEASLSVRHPEYN-----------RPLL--ANDLMLIKLDESVSESDTIRSI
  61 sp|P29786|TRY3_AEDAE   RT-NGGIIVKVKSVIPHPQYN-----------GDTY--NYDFSLLELDESIGFSRSIEAI
  62 sp|P35037|TRY3_ANOGA   HA-SGGTVVRVARVLEHPNYD-----------DSTI--DYDFSLMELESELTFSDVVQPV
  63 sp|P07338|CTRB1_RAT    -E-ENIQVLKIAQVFKNPKFN-----------MFTV--RNDITLLKLATPAQFSETVSAV
  64                                                                *. :..*         :
  65
  66 sp|O35205|GRAK_MOUSE   HLGSK-N-YLRDGTKCQVTGWGTTKP-DLLTASDTLREVTVTIISRKRCNSQSYYNHKPV
  67 sp|Q7YRZ7|GRAA_BOVIN   QLPRTED-DVKPHTKCHVAGWGSTKK-DACQMSNALREANVTVIDRKICNDAQHYNFNPV
  68 sp|P08884|GRAE_MOUSE   KLPRPNA-RVKPGDVCSVAGWGSRSINDT-KASARLREAQLVIQEDEECKKR--FR--HY
  69 sp|Q06606|GRZ2_RAT     ALPRSQD-WVKPGQVCTVAGWGRL--ANC-TSSNTLQEVNLEVQKGQKCQDM--SE--DY
  70 sp|P21844|MCPT5_MOUSE  PLSANFN-FIPPGRMCRAVGWGRTNV-NE-PASDTLQEVKMRLQEPQACKH---FT--SF
  71 sp|P03953|CFAD_MOUSE   PLQYEDK-EVEPGTLCDVAGWGVVTH--AGRRPDVLHQLRVSIMNRTTCNLRTYHD--GV
  72 sp|P00773|ELA1_RAT     VLPQEGT-ILANNNPCYITGWGRTRT--NGQLSQTLQQAYLPSVDYSICSSSSYWG--ST
  73 sp|Q00871|CTRB1_PENVA  KLPS--S-DVSVGTTVTPTGWGRPSD-SASGISDVLRQVNVPVMTNADCDS--VYG---I
  74 sp|P08246|ELNE_HUMAN   QLPAQGR-RLGNGVQCLAMGWGLLGR-N-RGIASVLQELNVTVVTS-LCR----------
  75 sp|P20160|CAP7_HUMAN   PLPLQNA-TVEAGTRCQVAGWGSQRS-G-GRLSRFPRFVNVTVTPEDQCR----------
  76 sp|P80015|CAP7_PIG     PLPPQNA-TVEAGTNCQVAGWGTQRL-R-RLFSRFPRVLNVTVT-SNPCL----------
  77 sp|Q03238|GRAM_RAT     ALPRKPRDKPAEGSRCSTAGWGITHQ-R-GQLAKSLQELDLRLLDTRMCNNSRFWN--GV
  78 sp|P00757|KLKB4_MOUSE  TLPTEE---PKLGSTCLASGWGSTTP-IKFKYPDDLQCVNLKLLPNEDCDKA--HE--MK
  79 sp|Q6H321|KLK2_HORSE   DLPTQE---PKLGSTCYTSGWGLIST-FTNRGSGTLQCVELRLQSNEKCARA--YP--EK
  80 sp|Q91VE3|KLK7_MOUSE   QLPEHC---EPPGTSCTVSGWGTTTS-PDVTFPSDLMCSDVKLISSRECKKV--YK--DL
  81 sp|Q9Y5K2|KLK4_HUMAN   SIASQC---PTAGNSCLVSGWGLLAN-G--RMPTVLQCVNVSVVSEEVCSKL--YD--PL
  82 sp|P29786|TRY3_AEDAE   ALPDASE-TVADGAMCTVSGWGDTKN--VFEMNTLLRAVNVPSYNQAECAAAL--VNVVP
  83 sp|P35037|TRY3_ANOGA   SLPDQDE-AVEDGTMTIVSGWGNTQS--AAESNAILRAANVPTVNQKECTIAY--SSSGG
  84 sp|P07338|CTRB1_RAT    CLPNVDD-DFPPGTVCATTGWGKTKY-NALKTPEKLQQAALPIVSEADCKKS--WG--SK
  85                         :                 ***                  :       *
  86
  87 sp|O35205|GRAK_MOUSE   ITKDMICAGDARGQKDSCKGDSGGPLICK----GIFHALVSQGY-K-CGIAKKPGIYTLL
  88 sp|Q7YRZ7|GRAA_BOVIN   IDLSMICAGGRKGEDDSCEGDSGSPLICD----NVFRGVTSFGK---CGNPQKPGIYILL
  89 sp|P08884|GRAE_MOUSE   TETTEICAGDLKKIKTPFKGDSGGPLVCD----NKAYGLLAYAK-N-R--TISSGVFTKI
  90 sp|Q06606|GRZ2_RAT     NDSIQLCVGNPSEGKATGKGDSGGPFVCD----GVAQGIVSYRL-C-T--GTLPRVFTRI
  91 sp|P21844|MCPT5_MOUSE  RHNSQLCVGNPKKMQNVYKGDSGGPLLCA----GIAQGIASYVH-R-N--AKPPAVFTRI
  92 sp|P03953|CFAD_MOUSE   VTINMMCAES--NRRDTCRGDSGSPLVCG----DAVEGVVTWGS-RVCGNGKKPGVYTRV
  93 sp|P00773|ELA1_RAT     VKTTMVCAGGDG-VRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFTRV
  94 sp|Q00871|CTRB1_PENVA  VGDGVVCIDGTG-GKSTCNGDSGGPLNLN----GMTYGITSFGSSAGCE-KGYPAAFTRV
  95 sp|P08246|ELNE_HUMAN   --RSNVCTLVRGRQAGVCFGDSGSPLVCN----GLIHGIASFVR-GGCASGLYPDAFAPV
  96 sp|P20160|CAP7_HUMAN   --PNNVCTGVLTRRGGICNGDGGTPLVCE----GLAHGVASFSL-GPCGR--GPDFFTRV
  97 sp|P80015|CAP7_PIG     --PRDMCIGVFSRRGRISQGDRGTPLVCN----GLAQGVASFLR-RRFRR--SSGFFTRV
  98 sp|Q03238|GRAM_RAT     LTDSMLCLKAGAKGQAPCKGDSGGPLVCG---KGKVDGILSFSS-KNCTDIFKPTVATAV
  99 sp|P00757|KLKB4_MOUSE  VTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSWGP-EPCGEPTEPSVYTKL
 100 sp|Q6H321|KLK2_HORSE   MTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSWGY-SECADFNDNFVFTKV
 101 sp|Q91VE3|KLK7_MOUSE   LGKTMLCAGIPDSKTNTCNGDSGGPLVCN----DTLQGLVSWGT-YPCGQPNDPGVYTQV
 102 sp|Q9Y5K2|KLK4_HUMAN   YHPSMFCAGGGQDQKDSCNGDSGGPLICN----GYLQGLVSFGK-APCGQVGVPGVYTNL
 103 sp|P29786|TRY3_AEDAE   VTEQMICAGYAAGGKDSCQGDSGGPLVSG----DKLVGVVSWGKG--CALPNLPGVYARV
 104 sp|P35037|TRY3_ANOGA   ITDRMLCAGYKRGGKDACQGDSGGPLVVD----GKLVGVVSWGFG--CAMPGYPGVYARV
 105 sp|P07338|CTRB1_RAT    ITDVMTCAGAS--GVSSCMGDSGGPLVCQKDGVWTLAGIVSWGS-GVCST-STPAVYSRV
 106                              *             * * .:           .: :                  :
 107
 108 sp|O35205|GRAK_MOUSE   TKKYQTWIKSKLA----PSRA----H------------
 109 sp|Q7YRZ7|GRAA_BOVIN   TKKHLNWIKKTIA----GAI------------------
 110 sp|P08884|GRAE_MOUSE   VH-FLPWISRNMK----LL-------------------
 111 sp|Q06606|GRZ2_RAT     SS-FIPWIQKTMKVL--QQS------------------
 112 sp|P21844|MCPT5_MOUSE  SH-YRPWINKILR----EN-------------------
 113 sp|P03953|CFAD_MOUSE   SS-YRMWIENITNGNMTS--------------------
 114 sp|P00773|ELA1_RAT     SA-YISWMNNVIA----YT-------------------
 115 sp|Q00871|CTRB1_PENVA  YY-YLDWIQQKTG----VTP------------------
 116 sp|P08246|ELNE_HUMAN   AQ-FVNWIDSIIQ----RSEDNPCPHP-RDPDPASRTH
 117 sp|P20160|CAP7_HUMAN   AL-FRDWIDGVLN----NPGP----GP-A---------
 118 sp|P80015|CAP7_PIG     AL-FRNWIDSVLN----NPP------------------
 119 sp|Q03238|GRAM_RAT     AP-YSSWIRKVIGRW----SP----QPLT---------
 120 sp|P00757|KLKB4_MOUSE  IK-FSSWIRETMA----NNP------------------
 121 sp|Q6H321|KLK2_HORSE   MP-HLKWIKETIE----KNS------------------
 122 sp|Q91VE3|KLK7_MOUSE   CK-YKRWVMETMK----THR------------------
 123 sp|Q9Y5K2|KLK4_HUMAN   CK-FTEWIEKTVQ----AS-------------------
 124 sp|P29786|TRY3_AEDAE   ST-VRQWIREVSEV------------------------
 125 sp|P35037|TRY3_ANOGA   AV-VRDWVRENSGA------------------------
 126 sp|P07338|CTRB1_RAT    TA-LMPWVQQILE----AN-------------------
 127                              *:
 128
 129
 130