binaries/src/tcoffee/example/three_pdb_two_seq.aln

   1 CLUSTAL FORMAT for T-COFFEE Version_4.32 [http://www.tcoffee.org], CPU=1.36 sec, SCORE=80, Nseq=5, Len=270
   2
   3 1FI8B                  ----------------------IIGGHEAKPHSRPYMAYLQIMY---GSKKCGGFLIRED
   4 1NN6A                  ------------------------GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRN
   5 1PPGE                  ----------------------IVGGRRARPHAWPFMVSLQLR----GGHFCGATLIAPN
   6 sp|Q7JIG6|KLK15_SAGOE  --MWLLLPLSFLLTSTAQDGGKLLEGEECAPHSQPWQVALY----ERGRFNCGASLISPH
   7 sp|P35034|TRYP_PLEPL   MRLLALLLMVGAAVAVPREDGRIIGGHECAAHSRPFMASL-----NYGYHFCGGVLINNQ
   8                                                 * .. .*: *: . *           **. **  .
   9
  10 1FI8B                  FVLTAAHCSG--SKIQV-LGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLK
  11 1NN6A                  FVLTAAHCAG--RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLK
  12 1PPGE                  FVMSAAHCVAN-VNVRVVLGAHNLSRREPTRQVFAVQRIFEN-GYDPVNLLNDIVILQLN
  13 sp|Q7JIG6|KLK15_SAGOE  WVLSAAHCQS--RFMRVRLGEHNLRKRDGPEQLRTASRVIPHPRYEARSHRHDIMLLRLV
  14 sp|P35034|TRYP_PLEPL   WVLSVAHCWYNPYAMQVMLGEHDLRKFEGTEQLMKTDTIIWHPNYDYQTLDLTSCSSSST
  15                        :*::.***      : * ** *:: . :   *   .   : :  *:  .
  16
  17 1FI8B                  SKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGK-----------YSDTLQEVE
  18 1NN6A                  EKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKP-----------GSDTLQEVK
  19 1PPGE                  GSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRG-----------IASVLQELN
  20 sp|Q7JIG6|KLK15_SAGOE  QPARLTPQVRPVVLPTRCPH--PGEACVVSGWGLVSHNEPGTTGRPQSQVSLPDTLHCAN
  21 sp|P35034|TRYP_PLEPL   ILWKVTHAVAPIPLPTSCPVA--GTPCSVSGWGNTARDG--------DEVYLPTLLQCMD
  22                             .  *    :*        *  * . ***  .                .  *:  .
  23
  24 1FI8B                  LTVQEDQKCESLKNYFDKANEICAD--PKIRAS--FRGDSGGPLVCKKVAAGIVSYGQ--
  25 1NN6A                  LRLMDPQACSHF-RDFDHNLQLCVG--NPRKTA--FKGDSGGPLLCAGVAQGIVSYGR--
  26 1PPGE                  VTVVTSL---------CRRSNVCTL--VRQAGV--CFGDSGSPLVCNGLIHGIASFVR--
  27 sp|Q7JIG6|KLK15_SAGOE  ISIISDASCDKNYPGRLTNTMVCAG--AEGRGAESCEGDSGGPLVCGGILQGIVSWGDVP
  28 sp|P35034|TRYP_PLEPL   VPIVDEEQCMKSYPDMISPRMVCAGFMDGSR--DACNGDSGSPLVCRGEVYGLVSWGQ--
  29                        : :                  :*.             ****.**:*     *:.*:
  30
  31 1FI8B                  -NDGST--PRAFTKVSTFLSWIKKTMKK--
  32 1NN6A                  -SDAKP--PAVFTRISHYRPWINQILQAN-
  33 1PPGE                  -GGCSGLYPDAFAPVAQFVNWIDSIIQ---
  34 sp|Q7JIG6|KLK15_SAGOE  CDNT--TKPGVYTKVCRYVKWIRETMKRN-
  35 sp|P35034|TRYP_PLEPL   -GCAQPNYPGVYVKLCEFLGWIERTLEAYP
  36                         .      * .:. :. :  **   ::
  37
  38
  39