1 /******************************COPYRIGHT NOTICE*******************************/
2 /* (c) Centro de Regulacio Genomica */
5 /* 12 Aug 2014 - 22:07. */
6 /*All rights reserved. */
7 /*This file is part of T-COFFEE. */
9 /* T-COFFEE is free software; you can redistribute it and/or modify */
10 /* it under the terms of the GNU General Public License as published by */
11 /* the Free Software Foundation; either version 2 of the License, or */
12 /* (at your option) any later version. */
14 /* T-COFFEE is distributed in the hope that it will be useful, */
15 /* but WITHOUT ANY WARRANTY; without even the implied warranty of */
16 /* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the */
17 /* GNU General Public License for more details. */
19 /* You should have received a copy of the GNU General Public License */
20 /* along with Foobar; if not, write to the Free Software */
21 /* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA */
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23 /* If you need some more information */
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26 /******************************COPYRIGHT NOTICE*******************************/
27 int fasta_cdna_linear_pair_wise (Alignment *A,int*ns, int **l_s,Constraint_list *CL);
28 int make_fasta_cdna_linear_pair_wise (Alignment *A,int*ns, int **l_s,Constraint_list *CL, int *diag);