binaries/windows/bj3.0.4p-jronn.patch

   1 Index: src/main/java/org/biojava3/ronn/ORonn.java
   2 ===================================================================
   3 --- src/main/java/org/biojava3/ronn/ORonn.java  (revision 9674)
   4 +++ src/main/java/org/biojava3/ronn/ORonn.java  (working copy)
   5 @@ -102,7 +102,9 @@
   6                 timer = new Timer(TimeUnit.MILLISECONDS);
   7         }
   8
   9 -       synchronized void writeResults(final float[] meanScores, final char[] seqs) {
  10 +       void writeResults(final float[] meanScores, final char[] seqs) {
  11 +               synchronized (out)
  12 +               {
  13                 out.println(">" + sequence.getId());
  14                 if (layout == ResultLayout.VERTICAL) {
  15                         for (int i = 0; i < meanScores.length; i++) {
  16 @@ -124,6 +126,7 @@
  17                 }
  18                 out.println();
  19                 out.flush();
  20 +               }
  21         }
  22
  23         static boolean isValidSequence(final FastaSequence fsequence) {