conf/settings/JpredPresets.xml

   1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
   2 <presets>\r
   3     <runnerClassName>compbio.runner.predictors.Jpred</runnerClassName>\r
   4 \r
   5     <preset>\r
   6         <name>cluser-single</name>\r
   7         <description>\r
   8             Dundee cluser configuration for single sequence prediction\r
   9         </description>\r
  10         <optlist>\r
  11                         <option>-dbpath /homes/www-jpred/databases </option>\r
  12                         <option>-dbname uniref90</option>\r
  13                         <option>-jabaws</option>\r
  14                         <option>-seq</option>\r
  15         </optlist>\r
  16     </preset>\r
  17 \r
  18     <preset>\r
  19         <name>cluster-alignment</name>\r
  20         <description>\r
  21             Dundee cluser configuration for multiple sequence alignment prediction\r
  22         </description>\r
  23         <optlist>\r
  24                         <option>-dbpath /homes/www-jpred/databases </option>\r
  25                         <option>-dbname uniref90</option>\r
  26                         <option>-jabaws</option>\r
  27         </optlist>\r
  28     </preset>\r
  29 \r
  30     <preset>\r
  31         <name>single</name>\r
  32         <description>\r
  33             4-core laptop configuration for single sequence prediction\r
  34         </description>\r
  35         <optlist>\r
  36             <option>-dbpath /data/UNIREFdb/</option>\r
  37             <option>-dbname ported_db</option>\r
  38             <option>-ncpu 3</option>\r
  39             <option>-jabaws</option>\r
  40             <option>-seq</option>\r
  41         </optlist>\r
  42     </preset>\r
  43 \r
  44     <preset>\r
  45         <name>alignemnt</name>\r
  46         <description>\r
  47             4-core laptop configuration for multiple sequence alignment prediction\r
  48         </description>\r
  49         <optlist>\r
  50             <option>-dbpath /data/UNIREFdb/</option>\r
  51             <option>-dbname ported_db</option>\r
  52             <option>-ncpu 3</option>\r
  53             <option>-jabaws</option>\r
  54         </optlist>\r
  55     </preset>\r
  56 \r
  57 </presets>\r