conf/settings/MafftLimits.xml

   1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
   2 <limits>\r
   3  <runnerClassName>compbio.runner.mafft.Mafft</runnerClassName>\r
   4         <limit isDefault="true">\r
   5                 <seqNumber>100000</seqNumber>\r
   6                 <seqLength>100000</seqLength>\r
   7         </limit>\r
   8         <limit isDefault="false">\r
   9                 <preset># LocalEngineExecutionLimit #</preset>\r
  10                 <seqNumber>100000</seqNumber>\r
  11                 <seqLength>100000</seqLength>\r
  12         </limit>\r
  13         \r
  14         <!-- Uncomment/edit these if you would like to have separate limits for presets --> \r
  15         <!-- \r
  16         <limit isDefault="false">\r
  17                 <preset>L-INS-i (Accuracy-oriented)</preset>\r
  18                 <seqNumber>500</seqNumber>\r
  19                 <seqLength>1000</seqLength>\r
  20         </limit>\r
  21         <limit isDefault="false">\r
  22                 <preset>G-INS-i (Accuracy-oriented)</preset>\r
  23                 <seqNumber>500</seqNumber>\r
  24                 <seqLength>1000</seqLength>\r
  25         </limit>\r
  26         <limit isDefault="false">\r
  27                 <preset>E-INS-i (Accuracy-oriented)</preset>\r
  28                 <seqNumber>500</seqNumber>\r
  29                 <seqLength>1000</seqLength>\r
  30         </limit>\r
  31         <limit isDefault="false">\r
  32                 <preset>FFT-NS-i (Speed oriented)</preset>\r
  33                 <seqNumber>2000</seqNumber>\r
  34                 <seqLength>1000</seqLength>\r
  35         </limit>\r
  36         <limit isDefault="false">\r
  37                 <preset>FFT-NS-1 (Speed oriented)</preset>\r
  38                 <seqNumber>2000</seqNumber>\r
  39                 <seqLength>1000</seqLength>\r
  40         </limit>\r
  41         <limit isDefault="false">\r
  42                 <preset>NW-NS-PartTree-1 (Speed oriented)</preset>\r
  43                 <seqNumber>2000</seqNumber>\r
  44                 <seqLength>1000</seqLength>\r
  45         </limit>\r
  46          -->\r
  47         \r
  48 </limits>\r