ensure we never check in autogenerated documentation or build artefacts

[jabaws.git] / runner / compbio / pipeline / _jpred / jpred.prop

## potentially a better set of parameters (esp. -b & -v)\r
## which avoid PSI-BLAST dying with large number of hits\r
 \r
# 'soft' filtering of the query sequence\r
psiblast.prms.set1=-e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -F "m S" \r
\r
# stricter searching criteria\r
psiblast.prms.set2=-e0.001 -h0.0001 -m6 -b10000 -v10000 -j3\r
psiblast.prms.set3=-e0.05 -h0.01 -m6 -b10000 -v10000 -j3