testsrc/compbio/ws/client/TestWSClient.java

   1 package compbio.ws.client;\r
   2 \r
   3 import static org.testng.Assert.assertNotNull;\r
   4 import static org.testng.Assert.fail;\r
   5 \r
   6 import java.io.File;\r
   7 import java.io.FileInputStream;\r
   8 import java.io.FileNotFoundException;\r
   9 import java.io.IOException;\r
  10 import java.net.URL;\r
  11 import java.util.List;\r
  12 \r
  13 import javax.xml.namespace.QName;\r
  14 import javax.xml.ws.Service;\r
  15 \r
  16 import org.testng.annotations.Test;\r
  17 \r
  18 import compbio.data.msa.MsaWS;\r
  19 import compbio.data.sequence.Alignment;\r
  20 import compbio.data.sequence.FastaSequence;\r
  21 import compbio.data.sequence.SequenceUtil;\r
  22 import compbio.metadata.JobSubmissionException;\r
  23 import compbio.metadata.LimitExceededException;\r
  24 import compbio.metadata.ResultNotAvailableException;\r
  25 import compbio.metadata.UnsupportedRuntimeException;\r
  26 import compbio.util.SysPrefs;\r
  27 import compbio.ws.server.ClustalWS;\r
  28 \r
  29 public class TestWSClient {\r
  30 \r
  31         @Test\r
  32         public void test() throws FileNotFoundException, IOException {\r
  33 \r
  34                 URL url = new URL("http://localhost:8080/jaba/ClustalWS?wsdl");\r
  35                 String namespace = "http://msa.data.compbio/01/01/2010/";\r
  36                 QName qname = new QName(namespace, "ClustalWS");\r
  37                 Service serv = Service.create(url, qname);\r
  38                 /*\r
  39                  * MsaWS msaws = serv.getPort(new QName(\r
  40                  * "http://msa.data.compbio/01/01/2010/", "ClustalWSPort"),\r
  41                  * MsaWS.class);\r
  42                  */\r
  43                 // Annotation<AACon> msaws = serv.getPort(new QName(namespace,\r
  44                 // "ClustalWSPort"), Annotation.class);\r
  45 \r
  46                 MsaWS<ClustalWS> msaws = serv.getPort(new QName(namespace,\r
  47                                 "ClustalWSPort"), MsaWS.class);\r
  48 \r
  49                 // List<FastaSequence> fsl = SequenceUtil.readFasta(new FileInputStream(\r
  50                 // AAConTester.test_alignment_input));\r
  51 \r
  52                 String CURRENT_DIRECTORY = SysPrefs.getCurrentDirectory()\r
  53                                 + File.separator;\r
  54 \r
  55                 List<FastaSequence> fsl = SequenceUtil.readFasta(new FileInputStream(\r
  56                                 CURRENT_DIRECTORY + "testsrc" + File.separator + "testdata"\r
  57                                                 + File.separator + "testlimit.in"));\r
  58 \r
  59                 try {\r
  60                         String jobId = msaws.align(fsl);\r
  61                         Alignment result = msaws.getResult(jobId);\r
  62                         assertNotNull(result);\r
  63                         System.out.println(result);\r
  64                 } catch (UnsupportedRuntimeException e) {\r
  65                         e.printStackTrace();\r
  66                         fail(e.getMessage());\r
  67                 } catch (LimitExceededException e) {\r
  68                         e.printStackTrace();\r
  69                         fail(e.getMessage());\r
  70                 } catch (JobSubmissionException e) {\r
  71                         e.printStackTrace();\r
  72                         fail(e.getMessage());\r
  73                 } catch (ResultNotAvailableException e) {\r
  74                         e.printStackTrace();\r
  75                         fail(e.getMessage());\r
  76                 }\r
  77                 System.out.println("Pres: " + msaws.getPresets());\r
  78         }\r
  79 }\r