Simple datamodel for RNAalifold.exe output and method to convert from
[jabaws.git] / webservices / compbio / data / structure / FoldWS.java
1 package compbio.data.structure;
2
3 import java.security.InvalidParameterException;
4 import java.util.List;
5
6 import javax.jws.WebMethod;
7 import javax.jws.WebParam;
8 import javax.jws.WebService;
9
10 import compbio.data.msa.JABAService;
11 import compbio.data.msa.JManagement;
12 import compbio.data.msa.Metadata;
13 import compbio.metadata.JobSubmissionException;
14 import compbio.metadata.LimitExceededException;
15 import compbio.metadata.Option;
16 import compbio.metadata.Preset;
17 import compbio.metadata.ResultNotAvailableException;
18 import compbio.metadata.UnsupportedRuntimeException;
19 import compbio.metadata.WrongParameterException;
20
21 /*
22  * Interface for tools that results RNA secondary structure information
23  * 
24  * Still Unsure whether a new interface is needed or whether secondary structre
25  * information could be exressed as a sequence annotation
26  */
27
28 // effect of a different targetNamespace?
29 @WebService(targetNamespace = JABAService.V2_SERVICE_NAMESPACE)
30 public interface FoldWS<T> 
31                 extends 
32                         JABAService,
33                         JManagement,
34                         Metadata<T> {
35
36         
37         
38         @WebMethod
39         String fold(
40                         @WebParam(name = )
41 }