webservices/compbio/ws/client/ServicesUtil.java

   1 package compbio.ws.client;\r
   2 \r
   3 import java.io.File;\r
   4 \r
   5 import compbio.engine.client.ConfExecutable;\r
   6 import compbio.engine.client.Executable;\r
   7 import compbio.runner.conservation.AACon;\r
   8 import compbio.runner.disorder.Disembl;\r
   9 import compbio.runner.disorder.GlobPlot;\r
  10 import compbio.runner.disorder.IUPred;\r
  11 import compbio.runner.disorder.Jronn;\r
  12 import compbio.runner.msa.ClustalO;\r
  13 import compbio.runner.msa.ClustalW;\r
  14 import compbio.runner.msa.Mafft;\r
  15 import compbio.runner.msa.Muscle;\r
  16 import compbio.runner.msa.Probcons;\r
  17 import compbio.runner.msa.Tcoffee;\r
  18 \r
  19 public class ServicesUtil {\r
  20 \r
  21         public static Services getServiceByRunner(Class<? extends Executable> class1) {\r
  22                 assert class1 != null;\r
  23                 String sname = class1.getSimpleName().toLowerCase();\r
  24                 for (Services service : Services.values()) {\r
  25                         if (service.toString().toLowerCase().contains(sname)) {\r
  26                                 return service;\r
  27                         }\r
  28                 }\r
  29                 return null;\r
  30         }\r
  31 \r
  32         public static Class<? extends Executable<?>> getServiceImpl(Services service) {\r
  33                 switch (service) {\r
  34                         case AAConWS :\r
  35                                 return AACon.class;\r
  36                         case ClustalOWS :\r
  37                                 return ClustalO.class;\r
  38                         case ClustalWS :\r
  39                                 return ClustalW.class;\r
  40                         case MafftWS :\r
  41                                 return Mafft.class;\r
  42                         case MuscleWS :\r
  43                                 return Muscle.class;\r
  44                         case TcoffeeWS :\r
  45                                 return Tcoffee.class;\r
  46                         case ProbconsWS :\r
  47                                 return Probcons.class;\r
  48                         case DisemblWS :\r
  49                                 return Disembl.class;\r
  50                         case GlobPlotWS :\r
  51                                 return GlobPlot.class;\r
  52                         case JronnWS :\r
  53                                 return Jronn.class;\r
  54                         case IUPredWS :\r
  55                                 return IUPred.class;\r
  56                         default :\r
  57                                 throw new RuntimeException(\r
  58                                                 "Unknown web service implementation class for service: "\r
  59                                                                 + service);\r
  60                 }\r
  61         }\r
  62 \r
  63         public static Class<? extends Executable<?>> getRunnerByJobDirectory(\r
  64                         File jobdir) {\r
  65                 Services service = getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
  66                 return getServiceImpl(service);\r
  67         }\r
  68 \r
  69         private static String getRunnerNameByJobDirectory(File jobdir) {\r
  70                 String name = jobdir.getName().split("#")[0];\r
  71 \r
  72                 if (name.startsWith(ConfExecutable.CLUSTER_TASK_ID_PREFIX)) {\r
  73                         assert ConfExecutable.CLUSTER_TASK_ID_PREFIX.length() == 1;\r
  74                         name = name.substring(1);\r
  75                 }\r
  76                 return name;\r
  77         }\r
  78 \r
  79         public static Services getServiceByJobDirectory(File jobdir) {\r
  80                 return getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));\r
  81         }\r
  82 \r
  83         private static Services getServiceByRunnerName(String name) {\r
  84                 for (Services service : Services.values()) {\r
  85                         String runnerName = getServiceImpl(service).getSimpleName()\r
  86                                         .toLowerCase();\r
  87                         name = name.trim().toLowerCase();\r
  88                         if (name.startsWith(runnerName)) {\r
  89                                 return service;\r
  90                         }\r
  91                 }\r
  92                 return null;\r
  93         }\r
  94 \r
  95 }\r